RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 ARHGAP5Q13017 1502 aa30.64■■■□□ 2.5
SS18-208ENST00000577751 RICTORQ6R327 1708 aa30.64■■■□□ 2.5
SS18-208ENST00000577751 DENND4BO75064 1496 aaPredicted RBP30.63■■■□□ 2.49
SS18-208ENST00000577751 ADGRL1O94910 1474 aa30.62■■■□□ 2.49
SS18-208ENST00000577751 MAP3K1Q13233 1512 aa30.61■■■□□ 2.49
SS18-208ENST00000577751 GPATCH8Q9UKJ3 1502 aaKnown RBP30.58■■■□□ 2.49
SS18-208ENST00000577751 SCAPERQ9BY12 1400 aa30.58■■■□□ 2.49
SS18-208ENST00000577751 LRRC9Q6ZRR7 1453 aa30.53■■■□□ 2.48
SS18-208ENST00000577751 POGZQ7Z3K3 1410 aa30.52■■■□□ 2.48
SS18-208ENST00000577751 CCNB3Q8WWL7 1395 aa30.52■■■□□ 2.48
SS18-208ENST00000577751 ZMYM4Q5VZL5 1548 aa30.52■■■□□ 2.48
SS18-208ENST00000577751 SUPT6HQ7KZ85 1726 aaKnown RBP30.51■■■□□ 2.47
SS18-208ENST00000577751 ABCC1P33527 1531 aa30.48■■■□□ 2.47
SS18-208ENST00000577751 NCOA2Q15596 1464 aa30.47■■■□□ 2.47
SS18-208ENST00000577751 SAMD9LQ8IVG5 1584 aa30.45■■■□□ 2.47
SS18-208ENST00000577751 KANK4Q5T7N3 995 aaPredicted RBP30.45■■■□□ 2.47
SS18-208ENST00000577751 ARHGEF12Q9NZN5 1544 aa30.45■■■□□ 2.47
SS18-208ENST00000577751 ITSN2Q9NZM3 1697 aa30.45■■■□□ 2.46
SS18-208ENST00000577751 MAGI2Q86UL8 1455 aa30.44■■■□□ 2.46
SS18-208ENST00000577751 CFDP1Q9UEE9 299 aaPredicted RBP30.44■■■□□ 2.46
SS18-208ENST00000577751 ZNF518AQ6AHZ1 1483 aa30.44■■■□□ 2.46
SS18-208ENST00000577751 KDM4FA0A1W2PPD8 638 aa30.42■■■□□ 2.46
SS18-208ENST00000577751 ARHGEF40Q8TER5 1519 aa30.42■■■□□ 2.46
SS18-208ENST00000577751 KDM5CP41229 1560 aa30.41■■■□□ 2.46
SS18-208ENST00000577751 AFAP1Q8N556 730 aa30.4■■■□□ 2.46
SS18-208ENST00000577751 ZNF777Q9ULD5 760 aaPredicted RBP30.4■■■□□ 2.46
SS18-208ENST00000577751 APLP2Q06481 763 aa30.39■■■□□ 2.46
SS18-208ENST00000577751 TRAPPC8Q9Y2L5 1435 aa30.39■■■□□ 2.45
SS18-208ENST00000577751 ZFYVE16Q7Z3T8 1539 aa30.38■■■□□ 2.45
SS18-208ENST00000577751 YEATS2Q9ULM3 1422 aa30.37■■■□□ 2.45
SS18-208ENST00000577751 KIAA1107Q9UPP5 1409 aa30.37■■■□□ 2.45
SS18-208ENST00000577751 PLEKHH2Q8IVE3 1493 aa30.36■■■□□ 2.45
SS18-208ENST00000577751 SYCP2Q9BX26 1530 aa30.34■■■□□ 2.45
SS18-208ENST00000577751 MLH3Q9UHC1 1453 aa30.31■■■□□ 2.44
SS18-208ENST00000577751 HNRNPMP52272 730 aaKnown RBP eCLIP30.31■■■□□ 2.44
SS18-208ENST00000577751 HECW2Q9P2P5 1572 aa30.31■■■□□ 2.44
SS18-208ENST00000577751 ZNF644Q9H582 1327 aaPredicted RBP30.3■■■□□ 2.44
SS18-208ENST00000577751 AEBP2Q6ZN18 517 aaPredicted RBP30.29■■■□□ 2.44
SS18-208ENST00000577751 ATP10AO60312 1499 aa30.26■■■□□ 2.44
SS18-208ENST00000577751 MBD5Q9P267 1494 aa30.25■■■□□ 2.43
SS18-208ENST00000577751 SIGLEC1Q9BZZ2 1709 aa30.25■■■□□ 2.43
SS18-208ENST00000577751 KIDINS220Q9ULH0 1771 aa30.24■■■□□ 2.43
SS18-208ENST00000577751 CAMSAP2Q08AD1 1489 aa30.22■■■□□ 2.43
SS18-208ENST00000577751 DIP2CQ9Y2E4 1556 aa30.22■■■□□ 2.43
SS18-208ENST00000577751 MYOM3Q5VTT5 1437 aa30.22■■■□□ 2.43
SS18-208ENST00000577751 C9orf84Q5VXU9 1444 aa30.21■■■□□ 2.43
SS18-208ENST00000577751 BCORL1Q5H9F3 1711 aa30.2■■■□□ 2.43
SS18-208ENST00000577751 ABCA6Q8N139 1617 aa30.2■■■□□ 2.43
SS18-208ENST00000577751 MIA2Q96PC5 1412 aa30.2■■■□□ 2.42
SS18-208ENST00000577751 MYT1LQ9UL68 1186 aa30.19■■■□□ 2.42
SS18-208ENST00000577751 ADAMTSL3P82987 1691 aa30.19■■■□□ 2.42
SS18-208ENST00000577751 ARID4BQ4LE39 1312 aaPredicted RBP30.19■■■□□ 2.42
SS18-208ENST00000577751 SPAG9O60271 1321 aaKnown RBP30.18■■■□□ 2.42
SS18-208ENST00000577751 REREQ9P2R6 1566 aa30.17■■■□□ 2.42
SS18-208ENST00000577751 INO80Q9ULG1 1556 aaPredicted RBP30.15■■■□□ 2.42
SS18-208ENST00000577751 RSPH4AQ5TD94 716 aa30.14■■■□□ 2.42
SS18-208ENST00000577751 ATP7AQ04656 1500 aa30.13■■■□□ 2.41
SS18-208ENST00000577751 ARHGEF5Q12774 1597 aa30.12■■■□□ 2.41
SS18-208ENST00000577751 CCDC141Q6ZP82 1450 aa30.11■■■□□ 2.41
SS18-208ENST00000577751 RTEL1-TNFRSF6BF6WH68 1400 aa30.09■■■□□ 2.41
SS18-208ENST00000577751 AGLP35573 1532 aa30.06■■■□□ 2.4
SS18-208ENST00000577751 MADDQ8WXG6 1647 aa30.05■■■□□ 2.4
SS18-208ENST00000577751 FGD6Q6ZV73 1430 aa30.05■■■□□ 2.4
SS18-208ENST00000577751 PTPN23Q9H3S7 1636 aa30.04■■■□□ 2.4
SS18-208ENST00000577751 ADGBQ8N7X0 1667 aa30.01■■■□□ 2.39
SS18-208ENST00000577751 TCOF1Q13428 1488 aaKnown RBP30■■■□□ 2.39
SS18-208ENST00000577751 MLECQ14165 292 aa30■■■□□ 2.39
SS18-208ENST00000577751 PLXNC1O60486 1568 aa29.99■■■□□ 2.39
SS18-208ENST00000577751 A2MP01023 1474 aa29.99■■■□□ 2.39
SS18-208ENST00000577751 PTPRMP28827 1452 aa29.99■■■□□ 2.39
SS18-208ENST00000577751 TSPY4P0CV99 314 aa29.98■■■□□ 2.39
SS18-208ENST00000577751 TSPY10P0CW01 314 aa29.98■■■□□ 2.39
SS18-208ENST00000577751 MAST1Q9Y2H9 1570 aa29.97■■■□□ 2.39
SS18-208ENST00000577751 RIMS1Q86UR5 1692 aaKnown RBP29.96■■■□□ 2.39
SS18-208ENST00000577751 FER1L4A9Z1Z3 1794 aa29.95■■■□□ 2.39
SS18-208ENST00000577751 DHX29Q7Z478 1369 aaKnown RBP29.9■■■□□ 2.38
SS18-208ENST00000577751 ABCC5O15440 1437 aa29.9■■■□□ 2.38
SS18-208ENST00000577751 DNMT1P26358 1616 aaKnown RBP29.89■■■□□ 2.38
SS18-208ENST00000577751 CROCC2H7BZ55 1655 aa29.88■■■□□ 2.37
SS18-208ENST00000577751 PPARGC1BQ86YN6 1023 aaKnown RBP29.87■■■□□ 2.37
SS18-208ENST00000577751 DAPK1P53355 1430 aa29.87■■■□□ 2.37
SS18-208ENST00000577751 SHANK2Q9UPX8 1470 aa29.86■■■□□ 2.37
SS18-208ENST00000577751 FAM50AQ14320 339 aaKnown RBP29.78■■■□□ 2.36
SS18-208ENST00000577751 CNTLNQ9NXG0 1405 aa29.76■■■□□ 2.35
SS18-208ENST00000577751 GGT6Q6P531 493 aa29.75■■■□□ 2.35
SS18-208ENST00000577751 PPP6R1Q9UPN7 881 aa29.75■■■□□ 2.35
SS18-208ENST00000577751 KIF3BO15066 747 aa29.74■■■□□ 2.35
SS18-208ENST00000577751 ESF1Q9H501 851 aaKnown RBP29.74■■■□□ 2.35
SS18-208ENST00000577751 DUOX2Q9NRD8 1548 aa29.73■■■□□ 2.35
SS18-208ENST00000577751 MROH2AA6NES4 1674 aa29.72■■■□□ 2.35
SS18-208ENST00000577751 C3P01024 1663 aa29.72■■■□□ 2.35
SS18-208ENST00000577751 EIF2AK4Q9P2K8 1649 aaKnown RBP29.71■■■□□ 2.35
SS18-208ENST00000577751 CEBPAP49715 358 aaPredicted RBP29.71■■■□□ 2.35
SS18-208ENST00000577751 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.71■■■□□ 2.35
SS18-208ENST00000577751 KIF15Q9NS87 1388 aa29.7■■■□□ 2.35
SS18-208ENST00000577751 PLPPR3Q6T4P5 718 aa29.69■■■□□ 2.34
SS18-208ENST00000577751 CLTCQ00610 1675 aaKnown RBP29.69■■■□□ 2.34
SS18-208ENST00000577751 ADGRL2O95490 1459 aa29.68■■■□□ 2.34
SS18-208ENST00000577751 ANKRD30AQ9BXX3 1397 aa29.68■■■□□ 2.34
SS18-208ENST00000577751 RRP7BPQ9NSQ0 103 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms