RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 ARHGEF40Q8TER5 1519 aa24.81■■□□□ 1.56
SF3B3-215ENST00000577085 POGZQ7Z3K3 1410 aa24.81■■□□□ 1.56
SF3B3-215ENST00000577085 ZMYM4Q5VZL5 1548 aa24.8■■□□□ 1.56
SF3B3-215ENST00000577085 ZFYVE16Q7Z3T8 1539 aa24.79■■□□□ 1.56
SF3B3-215ENST00000577085 MAGI2Q86UL8 1455 aa24.78■■□□□ 1.56
SF3B3-215ENST00000577085 MYT1LQ9UL68 1186 aa24.77■■□□□ 1.56
SF3B3-215ENST00000577085 LOC105371045A0A1W2PR82 267 aa24.76■■□□□ 1.55
SF3B3-215ENST00000577085 MTUS2Q5JR59 1369 aa24.75■■□□□ 1.55
SF3B3-215ENST00000577085 ZNF518AQ6AHZ1 1483 aa24.74■■□□□ 1.55
SF3B3-215ENST00000577085 PREX2Q70Z35 1606 aa24.74■■□□□ 1.55
SF3B3-215ENST00000577085 CDC42BPBQ9Y5S2 1711 aa24.72■■□□□ 1.55
SF3B3-215ENST00000577085 YEATS2Q9ULM3 1422 aa24.72■■□□□ 1.55
SF3B3-215ENST00000577085 ZNF777Q9ULD5 760 aaPredicted RBP24.7■■□□□ 1.54
SF3B3-215ENST00000577085 BCORL1Q5H9F3 1711 aa24.69■■□□□ 1.54
SF3B3-215ENST00000577085 AFAP1Q8N556 730 aa24.69■■□□□ 1.54
SF3B3-215ENST00000577085 ADAMTSL3P82987 1691 aa24.68■■□□□ 1.54
SF3B3-215ENST00000577085 CCNB3Q8WWL7 1395 aa24.67■■□□□ 1.54
SF3B3-215ENST00000577085 CDC42BPAQ5VT25 1732 aa24.67■■□□□ 1.54
SF3B3-215ENST00000577085 ATP10AO60312 1499 aa24.65■■□□□ 1.54
SF3B3-215ENST00000577085 ABCC1P33527 1531 aa24.65■■□□□ 1.54
SF3B3-215ENST00000577085 CFDP1Q9UEE9 299 aaPredicted RBP24.64■■□□□ 1.54
SF3B3-215ENST00000577085 PTPRMP28827 1452 aa24.64■■□□□ 1.53
SF3B3-215ENST00000577085 C9orf84Q5VXU9 1444 aa24.63■■□□□ 1.53
SF3B3-215ENST00000577085 GPATCH8Q9UKJ3 1502 aaKnown RBP24.63■■□□□ 1.53
SF3B3-215ENST00000577085 MLECQ14165 292 aa24.63■■□□□ 1.53
SF3B3-215ENST00000577085 MADDQ8WXG6 1647 aa24.63■■□□□ 1.53
SF3B3-215ENST00000577085 KDM5CP41229 1560 aa24.63■■□□□ 1.53
SF3B3-215ENST00000577085 EHBP1L1Q8N3D4 1523 aa24.62■■□□□ 1.53
SF3B3-215ENST00000577085 HECW2Q9P2P5 1572 aa24.62■■□□□ 1.53
SF3B3-215ENST00000577085 ITSN2Q9NZM3 1697 aa24.59■■□□□ 1.53
SF3B3-215ENST00000577085 TRAPPC8Q9Y2L5 1435 aa24.59■■□□□ 1.53
SF3B3-215ENST00000577085 ARHGEF12Q9NZN5 1544 aa24.58■■□□□ 1.53
SF3B3-215ENST00000577085 VPS8Q8N3P4 1428 aa24.58■■□□□ 1.53
SF3B3-215ENST00000577085 MLH3Q9UHC1 1453 aa24.57■■□□□ 1.52
SF3B3-215ENST00000577085 SAMD9LQ8IVG5 1584 aa24.56■■□□□ 1.52
SF3B3-215ENST00000577085 PLPPR3Q6T4P5 718 aa24.56■■□□□ 1.52
SF3B3-215ENST00000577085 PLEKHH2Q8IVE3 1493 aa24.56■■□□□ 1.52
SF3B3-215ENST00000577085 RIMS1Q86UR5 1692 aaKnown RBP24.56■■□□□ 1.52
SF3B3-215ENST00000577085 SYCP2Q9BX26 1530 aa24.55■■□□□ 1.52
SF3B3-215ENST00000577085 HNRNPMP52272 730 aaKnown RBP eCLIP24.54■■□□□ 1.52
SF3B3-215ENST00000577085 SIGLEC1Q9BZZ2 1709 aa24.54■■□□□ 1.52
SF3B3-215ENST00000577085 DIP2CQ9Y2E4 1556 aa24.52■■□□□ 1.52
SF3B3-215ENST00000577085 SPAG9O60271 1321 aaKnown RBP24.51■■□□□ 1.51
SF3B3-215ENST00000577085 KIAA1107Q9UPP5 1409 aa24.51■■□□□ 1.51
SF3B3-215ENST00000577085 TIAM1Q13009 1591 aa24.5■■□□□ 1.51
SF3B3-215ENST00000577085 ABCA6Q8N139 1617 aa24.5■■□□□ 1.51
SF3B3-215ENST00000577085 SUPT6HQ7KZ85 1726 aaKnown RBP24.49■■□□□ 1.51
SF3B3-215ENST00000577085 FER1L4A9Z1Z3 1794 aa24.49■■□□□ 1.51
SF3B3-215ENST00000577085 REREQ9P2R6 1566 aa24.46■■□□□ 1.51
SF3B3-215ENST00000577085 NCOA2Q15596 1464 aa24.46■■□□□ 1.51
SF3B3-215ENST00000577085 ESF1Q9H501 851 aaKnown RBP24.46■■□□□ 1.51
SF3B3-215ENST00000577085 APLP2Q06481 763 aa24.45■■□□□ 1.5
SF3B3-215ENST00000577085 KIDINS220Q9ULH0 1771 aa24.44■■□□□ 1.5
SF3B3-215ENST00000577085 ZNF644Q9H582 1327 aaPredicted RBP24.43■■□□□ 1.5
SF3B3-215ENST00000577085 LRRC9Q6ZRR7 1453 aa24.42■■□□□ 1.5
SF3B3-215ENST00000577085 ATP7AQ04656 1500 aa24.4■■□□□ 1.5
SF3B3-215ENST00000577085 AGLP35573 1532 aa24.4■■□□□ 1.5
SF3B3-215ENST00000577085 MAP3K1Q13233 1512 aa24.38■■□□□ 1.49
SF3B3-215ENST00000577085 INO80Q9ULG1 1556 aaPredicted RBP24.36■■□□□ 1.49
SF3B3-215ENST00000577085 CAMSAP2Q08AD1 1489 aa24.34■■□□□ 1.49
SF3B3-215ENST00000577085 KANK4Q5T7N3 995 aaPredicted RBP24.34■■□□□ 1.49
SF3B3-215ENST00000577085 LMTK3Q96Q04 1460 aa24.33■■□□□ 1.49
SF3B3-215ENST00000577085 MBD5Q9P267 1494 aa24.33■■□□□ 1.49
SF3B3-215ENST00000577085 CEBPAP49715 358 aaPredicted RBP24.33■■□□□ 1.49
SF3B3-215ENST00000577085 RSPH4AQ5TD94 716 aa24.33■■□□□ 1.49
SF3B3-215ENST00000577085 A2MP01023 1474 aa24.32■■□□□ 1.48
SF3B3-215ENST00000577085 CCDC141Q6ZP82 1450 aa24.31■■□□□ 1.48
SF3B3-215ENST00000577085 RTEL1-TNFRSF6BF6WH68 1400 aa24.28■■□□□ 1.48
SF3B3-215ENST00000577085 CNTLNQ9NXG0 1405 aa24.28■■□□□ 1.48
SF3B3-215ENST00000577085 TSPY4P0CV99 314 aa24.28■■□□□ 1.48
SF3B3-215ENST00000577085 TSPY10P0CW01 314 aa24.28■■□□□ 1.48
SF3B3-215ENST00000577085 ADGBQ8N7X0 1667 aa24.27■■□□□ 1.48
SF3B3-215ENST00000577085 HSPA2P54652 639 aa24.27■■□□□ 1.48
SF3B3-215ENST00000577085 GGT6Q6P531 493 aa24.25■■□□□ 1.47
SF3B3-215ENST00000577085 MYOM3Q5VTT5 1437 aa24.25■■□□□ 1.47
SF3B3-215ENST00000577085 PLXNC1O60486 1568 aa24.25■■□□□ 1.47
SF3B3-215ENST00000577085 PREX1Q8TCU6 1659 aa24.23■■□□□ 1.47
SF3B3-215ENST00000577085 MIA2Q96PC5 1412 aa24.22■■□□□ 1.47
SF3B3-215ENST00000577085 C3P01024 1663 aa24.21■■□□□ 1.47
SF3B3-215ENST00000577085 ARHGEF5Q12774 1597 aa24.21■■□□□ 1.47
SF3B3-215ENST00000577085 UHRF1BP1Q6BDS2 1440 aa24.21■■□□□ 1.47
SF3B3-215ENST00000577085 DHX29Q7Z478 1369 aaKnown RBP24.19■■□□□ 1.46
SF3B3-215ENST00000577085 PPP6R1Q9UPN7 881 aa24.17■■□□□ 1.46
SF3B3-215ENST00000577085 ZMYM3Q14202 1370 aa24.16■■□□□ 1.46
SF3B3-215ENST00000577085 KIF3BO15066 747 aa24.16■■□□□ 1.46
SF3B3-215ENST00000577085 MROH2AA6NES4 1674 aa24.15■■□□□ 1.46
SF3B3-215ENST00000577085 CLTCQ00610 1675 aaKnown RBP24.15■■□□□ 1.46
SF3B3-215ENST00000577085 SETD1BQ9UPS6 1966 aaKnown RBP24.12■■□□□ 1.45
SF3B3-215ENST00000577085 NPATQ14207 1427 aa24.1■■□□□ 1.45
SF3B3-215ENST00000577085 MAST1Q9Y2H9 1570 aa24.08■■□□□ 1.45
SF3B3-215ENST00000577085 PTPN23Q9H3S7 1636 aa24.08■■□□□ 1.45
SF3B3-215ENST00000577085 WASHC2CQ9Y4E1 1318 aa24.06■■□□□ 1.44
SF3B3-215ENST00000577085 FGD6Q6ZV73 1430 aa24.05■■□□□ 1.44
SF3B3-215ENST00000577085 ILDR1Q86SU0 546 aaPredicted RBP24.05■■□□□ 1.44
SF3B3-215ENST00000577085 DMRT2Q9Y5R5 561 aa24.05■■□□□ 1.44
SF3B3-215ENST00000577085 KDM5DQ9BY66 1539 aa24.02■■□□□ 1.44
SF3B3-215ENST00000577085 PTPRKQ15262 1439 aa24.01■■□□□ 1.43
SF3B3-215ENST00000577085 FAM135AQ9P2D6 1515 aa24■■□□□ 1.43
SF3B3-215ENST00000577085 SHANK2Q9UPX8 1470 aa24■■□□□ 1.43
SF3B3-215ENST00000577085 ABCC5O15440 1437 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms