RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 NCOA2Q15596 1464 aa12.53□□□□□ -0.4
CCDC40-215ENST00000576033 ITSN2Q9NZM3 1697 aa12.53□□□□□ -0.4
CCDC40-215ENST00000576033 GPATCH8Q9UKJ3 1502 aaKnown RBP12.52□□□□□ -0.4
CCDC40-215ENST00000576033 CDK11AQ9UQ88 783 aaPredicted RBP12.52□□□□□ -0.41
CCDC40-215ENST00000576033 ABCC1P33527 1531 aa12.52□□□□□ -0.41
CCDC40-215ENST00000576033 MAP3K1Q13233 1512 aa12.52□□□□□ -0.41
CCDC40-215ENST00000576033 AKNAQ7Z591 1439 aa12.51□□□□□ -0.41
CCDC40-215ENST00000576033 NEO1Q92859 1461 aa12.51□□□□□ -0.41
CCDC40-215ENST00000576033 ARAP3Q8WWN8 1544 aa12.51□□□□□ -0.41
CCDC40-215ENST00000576033 ARHGEF12Q9NZN5 1544 aa12.51□□□□□ -0.41
CCDC40-215ENST00000576033 ADGRL1O94910 1474 aa12.5□□□□□ -0.41
CCDC40-215ENST00000576033 SYCP2Q9BX26 1530 aa12.5□□□□□ -0.41
CCDC40-215ENST00000576033 SIGLEC1Q9BZZ2 1709 aa12.5□□□□□ -0.41
CCDC40-215ENST00000576033 PPARGC1BQ86YN6 1023 aaKnown RBP12.49□□□□□ -0.41
CCDC40-215ENST00000576033 RAPGEF3O95398 923 aa12.48□□□□□ -0.41
CCDC40-215ENST00000576033 POGZQ7Z3K3 1410 aa12.46□□□□□ -0.41
CCDC40-215ENST00000576033 CCNB3Q8WWL7 1395 aa12.46□□□□□ -0.41
CCDC40-215ENST00000576033 SCAPERQ9BY12 1400 aa12.45□□□□□ -0.42
CCDC40-215ENST00000576033 PHLDB1Q86UU1 1377 aa12.45□□□□□ -0.42
CCDC40-215ENST00000576033 ZNF644Q9H582 1327 aaPredicted RBP12.45□□□□□ -0.42
CCDC40-215ENST00000576033 ARHGEF40Q8TER5 1519 aa12.45□□□□□ -0.42
CCDC40-215ENST00000576033 CAMSAP2Q08AD1 1489 aa12.45□□□□□ -0.42
CCDC40-215ENST00000576033 TRAPPC8Q9Y2L5 1435 aa12.45□□□□□ -0.42
CCDC40-215ENST00000576033 ZMYM4Q5VZL5 1548 aa12.44□□□□□ -0.42
CCDC40-215ENST00000576033 ZNF777Q9ULD5 760 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-215ENST00000576033 DENND4BO75064 1496 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-215ENST00000576033 YEATS2Q9ULM3 1422 aa12.44□□□□□ -0.42
CCDC40-215ENST00000576033 ABCA6Q8N139 1617 aa12.44□□□□□ -0.42
CCDC40-215ENST00000576033 KDM5CP41229 1560 aa12.43□□□□□ -0.42
CCDC40-215ENST00000576033 HECW2Q9P2P5 1572 aa12.42□□□□□ -0.42
CCDC40-215ENST00000576033 EFCAB2Q5VUJ9 269 aa12.41□□□□□ -0.42
CCDC40-215ENST00000576033 KIDINS220Q9ULH0 1771 aa12.41□□□□□ -0.42
CCDC40-215ENST00000576033 PTPN23Q9H3S7 1636 aa12.4□□□□□ -0.42
CCDC40-215ENST00000576033 INO80Q9ULG1 1556 aaPredicted RBP12.4□□□□□ -0.42
CCDC40-215ENST00000576033 MYOM3Q5VTT5 1437 aa12.4□□□□□ -0.42
CCDC40-215ENST00000576033 ZFYVE16Q7Z3T8 1539 aa12.4□□□□□ -0.42
CCDC40-215ENST00000576033 DIP2CQ9Y2E4 1556 aa12.39□□□□□ -0.43
CCDC40-215ENST00000576033 APLP2Q06481 763 aa12.39□□□□□ -0.43
CCDC40-215ENST00000576033 CFDP1Q9UEE9 299 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-215ENST00000576033 ZNF518AQ6AHZ1 1483 aa12.39□□□□□ -0.43
CCDC40-215ENST00000576033 CROCC2H7BZ55 1655 aa12.38□□□□□ -0.43
CCDC40-215ENST00000576033 HNRNPMP52272 730 aaKnown RBP eCLIP12.38□□□□□ -0.43
CCDC40-215ENST00000576033 AFAP1Q8N556 730 aa12.38□□□□□ -0.43
CCDC40-215ENST00000576033 MBD5Q9P267 1494 aa12.38□□□□□ -0.43
CCDC40-215ENST00000576033 ADGBQ8N7X0 1667 aa12.37□□□□□ -0.43
CCDC40-215ENST00000576033 FGD6Q6ZV73 1430 aa12.37□□□□□ -0.43
CCDC40-215ENST00000576033 ATP7AQ04656 1500 aa12.35□□□□□ -0.43
CCDC40-215ENST00000576033 ARHGEF5Q12774 1597 aa12.35□□□□□ -0.43
CCDC40-215ENST00000576033 CCDC141Q6ZP82 1450 aa12.34□□□□□ -0.43
CCDC40-215ENST00000576033 TCOF1Q13428 1488 aaKnown RBP12.33□□□□□ -0.44
CCDC40-215ENST00000576033 PLEKHH2Q8IVE3 1493 aa12.33□□□□□ -0.44
CCDC40-215ENST00000576033 DNMT1P26358 1616 aaKnown RBP12.33□□□□□ -0.44
CCDC40-215ENST00000576033 KIAA1107Q9UPP5 1409 aa12.32□□□□□ -0.44
CCDC40-215ENST00000576033 BCORL1Q5H9F3 1711 aa12.31□□□□□ -0.44
CCDC40-215ENST00000576033 MIA2Q96PC5 1412 aa12.31□□□□□ -0.44
CCDC40-215ENST00000576033 MLH3Q9UHC1 1453 aa12.31□□□□□ -0.44
CCDC40-215ENST00000576033 MADDQ8WXG6 1647 aa12.3□□□□□ -0.44
CCDC40-215ENST00000576033 PLXNC1O60486 1568 aa12.3□□□□□ -0.44
CCDC40-215ENST00000576033 MAGI2Q86UL8 1455 aa12.29□□□□□ -0.44
CCDC40-215ENST00000576033 MAST1Q9Y2H9 1570 aa12.29□□□□□ -0.44
CCDC40-215ENST00000576033 ABCC5O15440 1437 aa12.28□□□□□ -0.44
CCDC40-215ENST00000576033 C9orf84Q5VXU9 1444 aa12.28□□□□□ -0.44
CCDC40-215ENST00000576033 KDM4FA0A1W2PPD8 638 aa12.28□□□□□ -0.44
CCDC40-215ENST00000576033 MYT1LQ9UL68 1186 aa12.28□□□□□ -0.44
CCDC40-215ENST00000576033 ADAMTSL3P82987 1691 aa12.28□□□□□ -0.44
CCDC40-215ENST00000576033 RIMS1Q86UR5 1692 aaKnown RBP12.28□□□□□ -0.44
CCDC40-215ENST00000576033 DAPK1P53355 1430 aa12.28□□□□□ -0.44
CCDC40-215ENST00000576033 ATP10AO60312 1499 aa12.27□□□□□ -0.44
CCDC40-215ENST00000576033 REREQ9P2R6 1566 aa12.27□□□□□ -0.44
CCDC40-215ENST00000576033 SPAG9O60271 1321 aaKnown RBP12.27□□□□□ -0.45
CCDC40-215ENST00000576033 FER1L4A9Z1Z3 1794 aa12.27□□□□□ -0.45
CCDC40-215ENST00000576033 PTPRKQ15262 1439 aa12.27□□□□□ -0.45
CCDC40-215ENST00000576033 FAM50AQ14320 339 aaKnown RBP12.25□□□□□ -0.45
CCDC40-215ENST00000576033 MLECQ14165 292 aa12.24□□□□□ -0.45
CCDC40-215ENST00000576033 A2MP01023 1474 aa12.23□□□□□ -0.45
CCDC40-215ENST00000576033 SHANK2Q9UPX8 1470 aa12.23□□□□□ -0.45
CCDC40-215ENST00000576033 ARID4BQ4LE39 1312 aaPredicted RBP12.23□□□□□ -0.45
CCDC40-215ENST00000576033 RRBP1Q9P2E9 1410 aaKnown RBP12.22□□□□□ -0.45
CCDC40-215ENST00000576033 CHIC2Q9UKJ5 165 aa12.21□□□□□ -0.45
CCDC40-215ENST00000576033 CLTCQ00610 1675 aaKnown RBP12.21□□□□□ -0.45
CCDC40-215ENST00000576033 RTEL1-TNFRSF6BF6WH68 1400 aa12.2□□□□□ -0.46
CCDC40-215ENST00000576033 MROH1Q8NDA8 1641 aa12.2□□□□□ -0.46
CCDC40-215ENST00000576033 ITGAEP38570 1179 aa12.2□□□□□ -0.46
CCDC40-215ENST00000576033 AGLP35573 1532 aa12.2□□□□□ -0.46
CCDC40-215ENST00000576033 CEP152O94986 1710 aa12.18□□□□□ -0.46
CCDC40-215ENST00000576033 ADGRL2O95490 1459 aa12.18□□□□□ -0.46
CCDC40-215ENST00000576033 RNF17Q9BXT8 1623 aaKnown RBP12.18□□□□□ -0.46
CCDC40-215ENST00000576033 KIF15Q9NS87 1388 aa12.18□□□□□ -0.46
CCDC40-215ENST00000576033 C3P01024 1663 aa12.17□□□□□ -0.46
CCDC40-215ENST00000576033 PLPPR3Q6T4P5 718 aa12.17□□□□□ -0.46
CCDC40-215ENST00000576033 EIF2AK4Q9P2K8 1649 aaKnown RBP12.17□□□□□ -0.46
CCDC40-215ENST00000576033 PTPRMP28827 1452 aa12.16□□□□□ -0.46
CCDC40-215ENST00000576033 RRP7BPQ9NSQ0 103 aa12.16□□□□□ -0.46
CCDC40-215ENST00000576033 DUOX2Q9NRD8 1548 aa12.16□□□□□ -0.46
CCDC40-215ENST00000576033 DHX29Q7Z478 1369 aaKnown RBP12.15□□□□□ -0.46
CCDC40-215ENST00000576033 DEPDC5O75140 1603 aa12.15□□□□□ -0.47
CCDC40-215ENST00000576033 GCC2Q8IWJ2 1684 aa12.14□□□□□ -0.47
CCDC40-215ENST00000576033 TSPY4P0CV99 314 aa12.14□□□□□ -0.47
CCDC40-215ENST00000576033 TSPY10P0CW01 314 aa12.14□□□□□ -0.47
CCDC40-215ENST00000576033 NCOA1Q15788 1441 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms