RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 ARHGAP5Q13017 1502 aa14.95□□□□□ -0.02
CCDC40-214ENST00000575431 CDC42BPAQ5VT25 1732 aa14.94□□□□□ -0.02
CCDC40-214ENST00000575431 GPATCH8Q9UKJ3 1502 aaKnown RBP14.93□□□□□ -0.02
CCDC40-214ENST00000575431 CDC42BPBQ9Y5S2 1711 aa14.93□□□□□ -0.02
CCDC40-214ENST00000575431 NCOA2Q15596 1464 aa14.93□□□□□ -0.02
CCDC40-214ENST00000575431 COL17A1Q9UMD9 1497 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-214ENST00000575431 ITSN2Q9NZM3 1697 aa14.93□□□□□ -0.02
CCDC40-214ENST00000575431 DENND4BO75064 1496 aaPredicted RBP14.91□□□□□ -0.02
CCDC40-214ENST00000575431 ADGRL1O94910 1474 aa14.91□□□□□ -0.02
CCDC40-214ENST00000575431 KANK4Q5T7N3 995 aaPredicted RBP14.91□□□□□ -0.02
CCDC40-214ENST00000575431 CFDP1Q9UEE9 299 aaPredicted RBP14.91□□□□□ -0.02
CCDC40-214ENST00000575431 SCAPERQ9BY12 1400 aa14.89□□□□□ -0.03
CCDC40-214ENST00000575431 PLEKHH2Q8IVE3 1493 aa14.89□□□□□ -0.03
CCDC40-214ENST00000575431 RAPGEF3O95398 923 aa14.86□□□□□ -0.03
CCDC40-214ENST00000575431 KIAA1107Q9UPP5 1409 aa14.85□□□□□ -0.03
CCDC40-214ENST00000575431 ZNF777Q9ULD5 760 aaPredicted RBP14.85□□□□□ -0.03
CCDC40-214ENST00000575431 RICTORQ6R327 1708 aa14.85□□□□□ -0.03
CCDC40-214ENST00000575431 ABCC1P33527 1531 aa14.85□□□□□ -0.03
CCDC40-214ENST00000575431 POGZQ7Z3K3 1410 aa14.84□□□□□ -0.03
CCDC40-214ENST00000575431 MIA2Q96PC5 1412 aa14.84□□□□□ -0.03
CCDC40-214ENST00000575431 ZNF518AQ6AHZ1 1483 aa14.84□□□□□ -0.03
CCDC40-214ENST00000575431 MAGI2Q86UL8 1455 aa14.84□□□□□ -0.03
CCDC40-214ENST00000575431 SAMD9LQ8IVG5 1584 aa14.84□□□□□ -0.03
CCDC40-214ENST00000575431 MYOM3Q5VTT5 1437 aa14.83□□□□□ -0.03
CCDC40-214ENST00000575431 FRMPD1Q5SYB0 1578 aa14.83□□□□□ -0.04
CCDC40-214ENST00000575431 ZMYM4Q5VZL5 1548 aa14.82□□□□□ -0.04
CCDC40-214ENST00000575431 RSPH4AQ5TD94 716 aa14.82□□□□□ -0.04
CCDC40-214ENST00000575431 KDM5CP41229 1560 aa14.79□□□□□ -0.04
CCDC40-214ENST00000575431 ARHGEF12Q9NZN5 1544 aa14.79□□□□□ -0.04
CCDC40-214ENST00000575431 SYCP2Q9BX26 1530 aa14.78□□□□□ -0.04
CCDC40-214ENST00000575431 AFAP1Q8N556 730 aa14.78□□□□□ -0.04
CCDC40-214ENST00000575431 CAMSAP2Q08AD1 1489 aa14.77□□□□□ -0.04
CCDC40-214ENST00000575431 MLH3Q9UHC1 1453 aa14.77□□□□□ -0.04
CCDC40-214ENST00000575431 TRAPPC8Q9Y2L5 1435 aa14.77□□□□□ -0.04
CCDC40-214ENST00000575431 HNRNPMP52272 730 aaKnown RBP eCLIP14.77□□□□□ -0.05
CCDC40-214ENST00000575431 ZFYVE16Q7Z3T8 1539 aa14.76□□□□□ -0.05
CCDC40-214ENST00000575431 ZNF644Q9H582 1327 aaPredicted RBP14.76□□□□□ -0.05
CCDC40-214ENST00000575431 HECW2Q9P2P5 1572 aa14.76□□□□□ -0.05
CCDC40-214ENST00000575431 MBD5Q9P267 1494 aa14.76□□□□□ -0.05
CCDC40-214ENST00000575431 MYT1LQ9UL68 1186 aa14.75□□□□□ -0.05
CCDC40-214ENST00000575431 ARHGEF40Q8TER5 1519 aa14.75□□□□□ -0.05
CCDC40-214ENST00000575431 FGD6Q6ZV73 1430 aa14.75□□□□□ -0.05
CCDC40-214ENST00000575431 ARHGEF5Q12774 1597 aa14.74□□□□□ -0.05
CCDC40-214ENST00000575431 SPAG9O60271 1321 aaKnown RBP14.73□□□□□ -0.05
CCDC40-214ENST00000575431 CCDC141Q6ZP82 1450 aa14.73□□□□□ -0.05
CCDC40-214ENST00000575431 PTPN23Q9H3S7 1636 aa14.73□□□□□ -0.05
CCDC40-214ENST00000575431 ATP10AO60312 1499 aa14.72□□□□□ -0.05
CCDC40-214ENST00000575431 TCOF1Q13428 1488 aaKnown RBP14.72□□□□□ -0.05
CCDC40-214ENST00000575431 TSPY4P0CV99 314 aa14.72□□□□□ -0.05
CCDC40-214ENST00000575431 TSPY10P0CW01 314 aa14.72□□□□□ -0.05
CCDC40-214ENST00000575431 RTEL1-TNFRSF6BF6WH68 1400 aa14.72□□□□□ -0.05
CCDC40-214ENST00000575431 YEATS2Q9ULM3 1422 aa14.71□□□□□ -0.05
CCDC40-214ENST00000575431 KIDINS220Q9ULH0 1771 aa14.7□□□□□ -0.06
CCDC40-214ENST00000575431 C9orf84Q5VXU9 1444 aa14.69□□□□□ -0.06
CCDC40-214ENST00000575431 ATP7AQ04656 1500 aa14.69□□□□□ -0.06
CCDC40-214ENST00000575431 REREQ9P2R6 1566 aa14.68□□□□□ -0.06
CCDC40-214ENST00000575431 INO80Q9ULG1 1556 aaPredicted RBP14.68□□□□□ -0.06
CCDC40-214ENST00000575431 DIP2CQ9Y2E4 1556 aa14.68□□□□□ -0.06
CCDC40-214ENST00000575431 PPARGC1BQ86YN6 1023 aaKnown RBP14.67□□□□□ -0.06
CCDC40-214ENST00000575431 ARID4BQ4LE39 1312 aaPredicted RBP14.66□□□□□ -0.06
CCDC40-214ENST00000575431 MAST1Q9Y2H9 1570 aa14.66□□□□□ -0.06
CCDC40-214ENST00000575431 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.66□□□□□ -0.06
CCDC40-214ENST00000575431 ABCA6Q8N139 1617 aa14.66□□□□□ -0.06
CCDC40-214ENST00000575431 DNMT1P26358 1616 aaKnown RBP14.65□□□□□ -0.06
CCDC40-214ENST00000575431 ADGBQ8N7X0 1667 aa14.65□□□□□ -0.06
CCDC40-214ENST00000575431 SHANK2Q9UPX8 1470 aa14.64□□□□□ -0.07
CCDC40-214ENST00000575431 FAM50AQ14320 339 aaKnown RBP14.64□□□□□ -0.07
CCDC40-214ENST00000575431 AGLP35573 1532 aa14.64□□□□□ -0.07
CCDC40-214ENST00000575431 DAPK1P53355 1430 aa14.64□□□□□ -0.07
CCDC40-214ENST00000575431 ABCC5O15440 1437 aa14.63□□□□□ -0.07
CCDC40-214ENST00000575431 A2MP01023 1474 aa14.62□□□□□ -0.07
CCDC40-214ENST00000575431 CROCC2H7BZ55 1655 aa14.61□□□□□ -0.07
CCDC40-214ENST00000575431 RRBP1Q9P2E9 1410 aaKnown RBP14.61□□□□□ -0.07
CCDC40-214ENST00000575431 BCORL1Q5H9F3 1711 aa14.61□□□□□ -0.07
CCDC40-214ENST00000575431 PLXNC1O60486 1568 aa14.6□□□□□ -0.07
CCDC40-214ENST00000575431 DHX29Q7Z478 1369 aaKnown RBP14.6□□□□□ -0.07
CCDC40-214ENST00000575431 KDM4FA0A1W2PPD8 638 aa14.58□□□□□ -0.08
CCDC40-214ENST00000575431 ADAMTSL3P82987 1691 aa14.58□□□□□ -0.08
CCDC40-214ENST00000575431 ANKRD30AQ9BXX3 1397 aa14.58□□□□□ -0.08
CCDC40-214ENST00000575431 SIGLEC1Q9BZZ2 1709 aa14.57□□□□□ -0.08
CCDC40-214ENST00000575431 DUOX2Q9NRD8 1548 aa14.56□□□□□ -0.08
CCDC40-214ENST00000575431 PPP6R1Q9UPN7 881 aa14.55□□□□□ -0.08
CCDC40-214ENST00000575431 ADGRL2O95490 1459 aa14.55□□□□□ -0.08
CCDC40-214ENST00000575431 MLECQ14165 292 aa14.54□□□□□ -0.08
CCDC40-214ENST00000575431 NCOA1Q15788 1441 aa14.54□□□□□ -0.08
CCDC40-214ENST00000575431 EIF2AK4Q9P2K8 1649 aaKnown RBP14.53□□□□□ -0.08
CCDC40-214ENST00000575431 ROCK1Q13464 1354 aa14.53□□□□□ -0.08
CCDC40-214ENST00000575431 KIF15Q9NS87 1388 aa14.53□□□□□ -0.08
CCDC40-214ENST00000575431 AEBP2Q6ZN18 517 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-214ENST00000575431 ESF1Q9H501 851 aaKnown RBP14.53□□□□□ -0.08
CCDC40-214ENST00000575431 KIF3BO15066 747 aa14.52□□□□□ -0.09
CCDC40-214ENST00000575431 CHIC2Q9UKJ5 165 aa14.52□□□□□ -0.09
CCDC40-214ENST00000575431 MADDQ8WXG6 1647 aa14.52□□□□□ -0.09
CCDC40-214ENST00000575431 ERBINQ96RT1 1412 aa14.51□□□□□ -0.09
CCDC40-214ENST00000575431 RRP7BPQ9NSQ0 103 aa14.51□□□□□ -0.09
CCDC40-214ENST00000575431 FER1L4A9Z1Z3 1794 aa14.51□□□□□ -0.09
CCDC40-214ENST00000575431 FAM135AQ9P2D6 1515 aa14.51□□□□□ -0.09
CCDC40-214ENST00000575431 CNTLNQ9NXG0 1405 aa14.5□□□□□ -0.09
CCDC40-214ENST00000575431 GGT6Q6P531 493 aa14.5□□□□□ -0.09
CCDC40-214ENST00000575431 PTPRKQ15262 1439 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms