RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ARHGAP5Q13017 1502 aa26.51■■□□□ 1.83
NUP88-210ENST00000574867 FANCAO15360 1455 aa26.49■■□□□ 1.83
NUP88-210ENST00000574867 NEO1Q92859 1461 aa26.49■■□□□ 1.83
NUP88-210ENST00000574867 MYOM3Q5VTT5 1437 aa26.47■■□□□ 1.83
NUP88-210ENST00000574867 PHLDB1Q86UU1 1377 aa26.44■■□□□ 1.82
NUP88-210ENST00000574867 EFCAB2Q5VUJ9 269 aa26.43■■□□□ 1.82
NUP88-210ENST00000574867 CFDP1Q9UEE9 299 aaPredicted RBP26.42■■□□□ 1.82
NUP88-210ENST00000574867 MIA2Q96PC5 1412 aa26.42■■□□□ 1.82
NUP88-210ENST00000574867 PPARGC1BQ86YN6 1023 aaKnown RBP26.42■■□□□ 1.82
NUP88-210ENST00000574867 AKNAQ7Z591 1439 aa26.39■■□□□ 1.82
NUP88-210ENST00000574867 SAMD9LQ8IVG5 1584 aa26.38■■□□□ 1.81
NUP88-210ENST00000574867 ABCC1P33527 1531 aa26.36■■□□□ 1.81
NUP88-210ENST00000574867 FGD6Q6ZV73 1430 aa26.36■■□□□ 1.81
NUP88-210ENST00000574867 ADGRL1O94910 1474 aa26.36■■□□□ 1.81
NUP88-210ENST00000574867 PLEKHH2Q8IVE3 1493 aa26.36■■□□□ 1.81
NUP88-210ENST00000574867 CAMSAP2Q08AD1 1489 aa26.33■■□□□ 1.81
NUP88-210ENST00000574867 KDM6BO15054 1643 aa26.33■■□□□ 1.81
NUP88-210ENST00000574867 PTPN23Q9H3S7 1636 aa26.32■■□□□ 1.8
NUP88-210ENST00000574867 ZNF777Q9ULD5 760 aaPredicted RBP26.32■■□□□ 1.8
NUP88-210ENST00000574867 KIAA1107Q9UPP5 1409 aa26.3■■□□□ 1.8
NUP88-210ENST00000574867 SYCP2Q9BX26 1530 aa26.29■■□□□ 1.8
NUP88-210ENST00000574867 TCOF1Q13428 1488 aaKnown RBP26.29■■□□□ 1.8
NUP88-210ENST00000574867 SCAPERQ9BY12 1400 aa26.28■■□□□ 1.8
NUP88-210ENST00000574867 DENND4BO75064 1496 aaPredicted RBP26.28■■□□□ 1.8
NUP88-210ENST00000574867 POGZQ7Z3K3 1410 aa26.26■■□□□ 1.79
NUP88-210ENST00000574867 RICTORQ6R327 1708 aa26.26■■□□□ 1.79
NUP88-210ENST00000574867 ARHGEF12Q9NZN5 1544 aa26.25■■□□□ 1.79
NUP88-210ENST00000574867 ZNF644Q9H582 1327 aaPredicted RBP26.25■■□□□ 1.79
NUP88-210ENST00000574867 COL17A1Q9UMD9 1497 aaPredicted RBP26.24■■□□□ 1.79
NUP88-210ENST00000574867 ZNF518AQ6AHZ1 1483 aa26.24■■□□□ 1.79
NUP88-210ENST00000574867 FRMPD1Q5SYB0 1578 aa26.23■■□□□ 1.79
NUP88-210ENST00000574867 ARHGEF5Q12774 1597 aa26.23■■□□□ 1.79
NUP88-210ENST00000574867 RRBP1Q9P2E9 1410 aaKnown RBP26.22■■□□□ 1.79
NUP88-210ENST00000574867 MBD5Q9P267 1494 aa26.22■■□□□ 1.79
NUP88-210ENST00000574867 KDM5CP41229 1560 aa26.2■■□□□ 1.78
NUP88-210ENST00000574867 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.19■■□□□ 1.78
NUP88-210ENST00000574867 CCDC141Q6ZP82 1450 aa26.19■■□□□ 1.78
NUP88-210ENST00000574867 ZMYM4Q5VZL5 1548 aa26.18■■□□□ 1.78
NUP88-210ENST00000574867 TRAPPC8Q9Y2L5 1435 aa26.18■■□□□ 1.78
NUP88-210ENST00000574867 HNRNPMP52272 730 aaKnown RBP eCLIP26.17■■□□□ 1.78
NUP88-210ENST00000574867 DNMT1P26358 1616 aaKnown RBP26.16■■□□□ 1.78
NUP88-210ENST00000574867 RSPH4AQ5TD94 716 aa26.16■■□□□ 1.78
NUP88-210ENST00000574867 RAPGEF3O95398 923 aa26.16■■□□□ 1.78
NUP88-210ENST00000574867 FAM50AQ14320 339 aaKnown RBP26.14■■□□□ 1.77
NUP88-210ENST00000574867 CROCC2H7BZ55 1655 aa26.13■■□□□ 1.77
NUP88-210ENST00000574867 HECW2Q9P2P5 1572 aa26.13■■□□□ 1.77
NUP88-210ENST00000574867 MAGI2Q86UL8 1455 aa26.11■■□□□ 1.77
NUP88-210ENST00000574867 AFAP1Q8N556 730 aa26.11■■□□□ 1.77
NUP88-210ENST00000574867 SHANK2Q9UPX8 1470 aa26.1■■□□□ 1.77
NUP88-210ENST00000574867 DAPK1P53355 1430 aa26.1■■□□□ 1.77
NUP88-210ENST00000574867 MLH3Q9UHC1 1453 aa26.1■■□□□ 1.77
NUP88-210ENST00000574867 INO80Q9ULG1 1556 aaPredicted RBP26.09■■□□□ 1.77
NUP88-210ENST00000574867 MAST1Q9Y2H9 1570 aa26.08■■□□□ 1.77
NUP88-210ENST00000574867 ABCC5O15440 1437 aa26.08■■□□□ 1.76
NUP88-210ENST00000574867 ZFYVE16Q7Z3T8 1539 aa26.07■■□□□ 1.76
NUP88-210ENST00000574867 ATP7AQ04656 1500 aa26.06■■□□□ 1.76
NUP88-210ENST00000574867 SPAG9O60271 1321 aaKnown RBP26.06■■□□□ 1.76
NUP88-210ENST00000574867 ARHGEF40Q8TER5 1519 aa26.06■■□□□ 1.76
NUP88-210ENST00000574867 RTEL1-TNFRSF6BF6WH68 1400 aa26.05■■□□□ 1.76
NUP88-210ENST00000574867 KIDINS220Q9ULH0 1771 aa26.05■■□□□ 1.76
NUP88-210ENST00000574867 TSPY4P0CV99 314 aa26.04■■□□□ 1.76
NUP88-210ENST00000574867 TSPY10P0CW01 314 aa26.04■■□□□ 1.76
NUP88-210ENST00000574867 C9orf84Q5VXU9 1444 aa26.03■■□□□ 1.76
NUP88-210ENST00000574867 ADGBQ8N7X0 1667 aa26■■□□□ 1.75
NUP88-210ENST00000574867 ABCA6Q8N139 1617 aa26■■□□□ 1.75
NUP88-210ENST00000574867 PLXNC1O60486 1568 aa25.99■■□□□ 1.75
NUP88-210ENST00000574867 DIP2CQ9Y2E4 1556 aa25.99■■□□□ 1.75
NUP88-210ENST00000574867 MYT1LQ9UL68 1186 aa25.98■■□□□ 1.75
NUP88-210ENST00000574867 YEATS2Q9ULM3 1422 aa25.98■■□□□ 1.75
NUP88-210ENST00000574867 ADGRL2O95490 1459 aa25.96■■□□□ 1.75
NUP88-210ENST00000574867 PTPRKQ15262 1439 aa25.94■■□□□ 1.74
NUP88-210ENST00000574867 REREQ9P2R6 1566 aa25.93■■□□□ 1.74
NUP88-210ENST00000574867 ATP10AO60312 1499 aa25.93■■□□□ 1.74
NUP88-210ENST00000574867 ANKRD30AQ9BXX3 1397 aa25.91■■□□□ 1.74
NUP88-210ENST00000574867 ITGAEP38570 1179 aa25.91■■□□□ 1.74
NUP88-210ENST00000574867 ROCK1Q13464 1354 aa25.91■■□□□ 1.74
NUP88-210ENST00000574867 NCOA1Q15788 1441 aa25.89■■□□□ 1.73
NUP88-210ENST00000574867 CHIC2Q9UKJ5 165 aa25.88■■□□□ 1.73
NUP88-210ENST00000574867 A2MP01023 1474 aa25.87■■□□□ 1.73
NUP88-210ENST00000574867 KIF15Q9NS87 1388 aa25.86■■□□□ 1.73
NUP88-210ENST00000574867 DUOX2Q9NRD8 1548 aa25.86■■□□□ 1.73
NUP88-210ENST00000574867 DHX29Q7Z478 1369 aaKnown RBP25.82■■□□□ 1.72
NUP88-210ENST00000574867 AGLP35573 1532 aa25.82■■□□□ 1.72
NUP88-210ENST00000574867 EIF2AK4Q9P2K8 1649 aaKnown RBP25.8■■□□□ 1.72
NUP88-210ENST00000574867 ERBINQ96RT1 1412 aa25.8■■□□□ 1.72
NUP88-210ENST00000574867 SIGLEC1Q9BZZ2 1709 aa25.8■■□□□ 1.72
NUP88-210ENST00000574867 RRP7BPQ9NSQ0 103 aa25.8■■□□□ 1.72
NUP88-210ENST00000574867 GCC2Q8IWJ2 1684 aa25.79■■□□□ 1.72
NUP88-210ENST00000574867 BCORL1Q5H9F3 1711 aa25.79■■□□□ 1.72
NUP88-210ENST00000574867 TRIM26Q12899 539 aaPredicted RBP25.78■■□□□ 1.72
NUP88-210ENST00000574867 HFM1A2PYH4 1435 aa25.77■■□□□ 1.72
NUP88-210ENST00000574867 ANKRD50Q9ULJ7 1429 aa25.74■■□□□ 1.71
NUP88-210ENST00000574867 NAIPQ13075 1403 aa25.72■■□□□ 1.71
NUP88-210ENST00000574867 ARID4BQ4LE39 1312 aaPredicted RBP25.71■■□□□ 1.71
NUP88-210ENST00000574867 RNF17Q9BXT8 1623 aaKnown RBP25.7■■□□□ 1.7
NUP88-210ENST00000574867 DEPDC5O75140 1603 aa25.67■■□□□ 1.7
NUP88-210ENST00000574867 KIF3BO15066 747 aa25.65■■□□□ 1.7
NUP88-210ENST00000574867 PRDM15P57071 1507 aaPredicted RBP25.63■■□□□ 1.69
NUP88-210ENST00000574867 FAM135AQ9P2D6 1515 aa25.62■■□□□ 1.69
NUP88-210ENST00000574867 UNC13BO14795 1591 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms