RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 RIMS1Q86UR5 1692 aaKnown RBP20.03■□□□□ 0.8
CCDC40-210ENST00000573903 CLIP1P30622 1438 aa20.01■□□□□ 0.79
CCDC40-210ENST00000573903 SCAPERQ9BY12 1400 aa20.01■□□□□ 0.79
CCDC40-210ENST00000573903 EFCAB2Q5VUJ9 269 aa19.98■□□□□ 0.79
CCDC40-210ENST00000573903 YEATS2Q9ULM3 1422 aa19.98■□□□□ 0.79
CCDC40-210ENST00000573903 TROQ12816 1431 aaPredicted RBP19.97■□□□□ 0.79
CCDC40-210ENST00000573903 PCF11O94913 1555 aaKnown RBP19.96■□□□□ 0.79
CCDC40-210ENST00000573903 ARHGAP5Q13017 1502 aa19.95■□□□□ 0.78
CCDC40-210ENST00000573903 LRRIQ1Q96JM4 1722 aa19.94■□□□□ 0.78
CCDC40-210ENST00000573903 FER1L4A9Z1Z3 1794 aa19.93■□□□□ 0.78
CCDC40-210ENST00000573903 CCDC18Q5T9S5 1454 aa19.92■□□□□ 0.78
CCDC40-210ENST00000573903 SIGLEC1Q9BZZ2 1709 aa19.92■□□□□ 0.78
CCDC40-210ENST00000573903 ZNF518AQ6AHZ1 1483 aa19.92■□□□□ 0.78
CCDC40-210ENST00000573903 C9orf84Q5VXU9 1444 aa19.91■□□□□ 0.78
CCDC40-210ENST00000573903 LMTK3Q96Q04 1460 aa19.91■□□□□ 0.78
CCDC40-210ENST00000573903 MLECQ14165 292 aa19.9■□□□□ 0.78
CCDC40-210ENST00000573903 PLPPR3Q6T4P5 718 aa19.9■□□□□ 0.78
CCDC40-210ENST00000573903 ATP10AO60312 1499 aa19.9■□□□□ 0.78
CCDC40-210ENST00000573903 CASKIN1Q8WXD9 1431 aa19.88■□□□□ 0.77
CCDC40-210ENST00000573903 MYT1LQ9UL68 1186 aa19.87■□□□□ 0.77
CCDC40-210ENST00000573903 CDC42BPBQ9Y5S2 1711 aa19.86■□□□□ 0.77
CCDC40-210ENST00000573903 PREX2Q70Z35 1606 aa19.86■□□□□ 0.77
CCDC40-210ENST00000573903 KDM5CP41229 1560 aa19.86■□□□□ 0.77
CCDC40-210ENST00000573903 FYCO1Q9BQS8 1478 aa19.84■□□□□ 0.77
CCDC40-210ENST00000573903 ARHGEF12Q9NZN5 1544 aa19.83■□□□□ 0.77
CCDC40-210ENST00000573903 AFAP1Q8N556 730 aa19.8■□□□□ 0.76
CCDC40-210ENST00000573903 ITSN2Q9NZM3 1697 aa19.8■□□□□ 0.76
CCDC40-210ENST00000573903 ABCC1P33527 1531 aa19.8■□□□□ 0.76
CCDC40-210ENST00000573903 DIP2CQ9Y2E4 1556 aa19.79■□□□□ 0.76
CCDC40-210ENST00000573903 FBXO41Q8TF61 875 aa19.79■□□□□ 0.76
CCDC40-210ENST00000573903 HSPA2P54652 639 aa19.78■□□□□ 0.76
CCDC40-210ENST00000573903 CDC42BPAQ5VT25 1732 aa19.78■□□□□ 0.76
CCDC40-210ENST00000573903 REREQ9P2R6 1566 aa19.78■□□□□ 0.76
CCDC40-210ENST00000573903 MLH3Q9UHC1 1453 aa19.77■□□□□ 0.76
CCDC40-210ENST00000573903 PREX1Q8TCU6 1659 aa19.77■□□□□ 0.76
CCDC40-210ENST00000573903 ABCA6Q8N139 1617 aa19.76■□□□□ 0.75
CCDC40-210ENST00000573903 TRAPPC8Q9Y2L5 1435 aa19.73■□□□□ 0.75
CCDC40-210ENST00000573903 ESF1Q9H501 851 aaKnown RBP19.71■□□□□ 0.75
CCDC40-210ENST00000573903 AGLP35573 1532 aa19.7■□□□□ 0.74
CCDC40-210ENST00000573903 KIDINS220Q9ULH0 1771 aa19.7■□□□□ 0.74
CCDC40-210ENST00000573903 ZNF777Q9ULD5 760 aaPredicted RBP19.69■□□□□ 0.74
CCDC40-210ENST00000573903 UHRF1BP1Q6BDS2 1440 aa19.68■□□□□ 0.74
CCDC40-210ENST00000573903 CEBPAP49715 358 aaPredicted RBP19.68■□□□□ 0.74
CCDC40-210ENST00000573903 SAMD9LQ8IVG5 1584 aa19.68■□□□□ 0.74
CCDC40-210ENST00000573903 SYCP2Q9BX26 1530 aa19.67■□□□□ 0.74
CCDC40-210ENST00000573903 MTUS2Q5JR59 1369 aa19.66■□□□□ 0.74
CCDC40-210ENST00000573903 GPATCH8Q9UKJ3 1502 aaKnown RBP19.66■□□□□ 0.74
CCDC40-210ENST00000573903 C3P01024 1663 aa19.65■□□□□ 0.74
CCDC40-210ENST00000573903 SETD1BQ9UPS6 1966 aaKnown RBP19.65■□□□□ 0.74
CCDC40-210ENST00000573903 PLEKHH2Q8IVE3 1493 aa19.65■□□□□ 0.74
CCDC40-210ENST00000573903 CCNB3Q8WWL7 1395 aa19.64■□□□□ 0.73
CCDC40-210ENST00000573903 CNTLNQ9NXG0 1405 aa19.63■□□□□ 0.73
CCDC40-210ENST00000573903 SPAG9O60271 1321 aaKnown RBP19.62■□□□□ 0.73
CCDC40-210ENST00000573903 CFDP1Q9UEE9 299 aaPredicted RBP19.62■□□□□ 0.73
CCDC40-210ENST00000573903 ATP7AQ04656 1500 aa19.61■□□□□ 0.73
CCDC40-210ENST00000573903 DMRT2Q9Y5R5 561 aa19.6■□□□□ 0.73
CCDC40-210ENST00000573903 EHBP1L1Q8N3D4 1523 aa19.6■□□□□ 0.73
CCDC40-210ENST00000573903 KIAA1107Q9UPP5 1409 aa19.59■□□□□ 0.73
CCDC40-210ENST00000573903 SUPT6HQ7KZ85 1726 aaKnown RBP19.59■□□□□ 0.73
CCDC40-210ENST00000573903 HNRNPMP52272 730 aaKnown RBP eCLIP19.59■□□□□ 0.73
CCDC40-210ENST00000573903 MROH2AA6NES4 1674 aa19.58■□□□□ 0.72
CCDC40-210ENST00000573903 INO80Q9ULG1 1556 aaPredicted RBP19.57■□□□□ 0.72
CCDC40-210ENST00000573903 CERKQ8TCT0 537 aa19.57■□□□□ 0.72
CCDC40-210ENST00000573903 STRCQ7RTU9 1775 aa19.56■□□□□ 0.72
CCDC40-210ENST00000573903 TIAM1Q13009 1591 aa19.55■□□□□ 0.72
CCDC40-210ENST00000573903 CEP162Q5TB80 1403 aa19.55■□□□□ 0.72
CCDC40-210ENST00000573903 A2MP01023 1474 aa19.54■□□□□ 0.72
CCDC40-210ENST00000573903 PLXNC1O60486 1568 aa19.53■□□□□ 0.72
CCDC40-210ENST00000573903 ADGBQ8N7X0 1667 aa19.52■□□□□ 0.72
CCDC40-210ENST00000573903 CLTCQ00610 1675 aaKnown RBP19.51■□□□□ 0.71
CCDC40-210ENST00000573903 NPATQ14207 1427 aa19.51■□□□□ 0.71
CCDC40-210ENST00000573903 ZMYM3Q14202 1370 aa19.48■□□□□ 0.71
CCDC40-210ENST00000573903 PTPRTO14522 1441 aa19.48■□□□□ 0.71
CCDC40-210ENST00000573903 GGT6Q6P531 493 aa19.46■□□□□ 0.71
CCDC40-210ENST00000573903 ZNF644Q9H582 1327 aaPredicted RBP19.45■□□□□ 0.7
CCDC40-210ENST00000573903 RTEL1-TNFRSF6BF6WH68 1400 aa19.44■□□□□ 0.7
CCDC40-210ENST00000573903 NCOA1Q15788 1441 aa19.44■□□□□ 0.7
CCDC40-210ENST00000573903 MBD5Q9P267 1494 aa19.44■□□□□ 0.7
CCDC40-210ENST00000573903 CAMSAP1Q5T5Y3 1602 aa19.43■□□□□ 0.7
CCDC40-210ENST00000573903 MYO3AQ8NEV4 1616 aa19.43■□□□□ 0.7
CCDC40-210ENST00000573903 ZNF142P52746 1687 aaPredicted RBP19.43■□□□□ 0.7
CCDC40-210ENST00000573903 NCOA2Q15596 1464 aa19.42■□□□□ 0.7
CCDC40-210ENST00000573903 PPP6R1Q9UPN7 881 aa19.42■□□□□ 0.7
CCDC40-210ENST00000573903 CCDC141Q6ZP82 1450 aa19.41■□□□□ 0.7
CCDC40-210ENST00000573903 CAMSAP2Q08AD1 1489 aa19.41■□□□□ 0.7
CCDC40-210ENST00000573903 CEP170BQ9Y4F5 1589 aaPredicted RBP19.39■□□□□ 0.69
CCDC40-210ENST00000573903 PTPRKQ15262 1439 aa19.38■□□□□ 0.69
CCDC40-210ENST00000573903 RSPH4AQ5TD94 716 aa19.38■□□□□ 0.69
CCDC40-210ENST00000573903 DHX29Q7Z478 1369 aaKnown RBP19.37■□□□□ 0.69
CCDC40-210ENST00000573903 PLA2R1Q13018 1463 aa19.35■□□□□ 0.69
CCDC40-210ENST00000573903 VPS8Q8N3P4 1428 aa19.35■□□□□ 0.69
CCDC40-210ENST00000573903 FAM135AQ9P2D6 1515 aa19.35■□□□□ 0.69
CCDC40-210ENST00000573903 ARHGEF5Q12774 1597 aa19.34■□□□□ 0.69
CCDC40-210ENST00000573903 IQSEC2Q5JU85 1478 aa19.34■□□□□ 0.69
CCDC40-210ENST00000573903 LTBP4Q8N2S1 1624 aa19.33■□□□□ 0.69
CCDC40-210ENST00000573903 KIF3BO15066 747 aa19.33■□□□□ 0.68
CCDC40-210ENST00000573903 KDM5DQ9BY66 1539 aa19.33■□□□□ 0.68
CCDC40-210ENST00000573903 PKD2Q13563 968 aa19.32■□□□□ 0.68
CCDC40-210ENST00000573903 LRRC9Q6ZRR7 1453 aa19.32■□□□□ 0.68
CCDC40-210ENST00000573903 NCKAP5LQ9HCH0 1330 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms