RNA–Protein interactions for RNA: ENST00000573857.5

TVP23A-208, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

TSL 1 (best)

Gene TVP23A, Length 1,269 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-208ENST00000573857 YEATS2Q9ULM3 1422 aa23.39■■□□□ 1.33
TVP23A-208ENST00000573857 EFCAB2Q5VUJ9 269 aa23.38■■□□□ 1.33
TVP23A-208ENST00000573857 MYO5CQ9NQX4 1742 aa23.38■■□□□ 1.33
TVP23A-208ENST00000573857 MADDQ8WXG6 1647 aa23.37■■□□□ 1.33
TVP23A-208ENST00000573857 LRRIQ1Q96JM4 1722 aa23.37■■□□□ 1.33
TVP23A-208ENST00000573857 CASKIN1Q8WXD9 1431 aa23.37■■□□□ 1.33
TVP23A-208ENST00000573857 PCF11O94913 1555 aaKnown RBP23.35■■□□□ 1.33
TVP23A-208ENST00000573857 CCDC18Q5T9S5 1454 aa23.34■■□□□ 1.33
TVP23A-208ENST00000573857 ARHGAP5Q13017 1502 aa23.32■■□□□ 1.32
TVP23A-208ENST00000573857 SIGLEC1Q9BZZ2 1709 aa23.3■■□□□ 1.32
TVP23A-208ENST00000573857 FYCO1Q9BQS8 1478 aa23.29■■□□□ 1.32
TVP23A-208ENST00000573857 ZNF518AQ6AHZ1 1483 aa23.28■■□□□ 1.32
TVP23A-208ENST00000573857 RIMS1Q86UR5 1692 aaKnown RBP23.27■■□□□ 1.32
TVP23A-208ENST00000573857 ATP10AO60312 1499 aa23.26■■□□□ 1.31
TVP23A-208ENST00000573857 ILDR1Q86SU0 546 aaPredicted RBP23.25■■□□□ 1.31
TVP23A-208ENST00000573857 C9orf84Q5VXU9 1444 aa23.25■■□□□ 1.31
TVP23A-208ENST00000573857 KDM5CP41229 1560 aa23.23■■□□□ 1.31
TVP23A-208ENST00000573857 AFAP1Q8N556 730 aa23.23■■□□□ 1.31
TVP23A-208ENST00000573857 PREX2Q70Z35 1606 aa23.22■■□□□ 1.31
TVP23A-208ENST00000573857 CDC42BPBQ9Y5S2 1711 aa23.22■■□□□ 1.31
TVP23A-208ENST00000573857 MLECQ14165 292 aa23.21■■□□□ 1.31
TVP23A-208ENST00000573857 LMTK3Q96Q04 1460 aa23.21■■□□□ 1.31
TVP23A-208ENST00000573857 ABCC1P33527 1531 aa23.18■■□□□ 1.3
TVP23A-208ENST00000573857 ARHGEF12Q9NZN5 1544 aa23.18■■□□□ 1.3
TVP23A-208ENST00000573857 FER1L4A9Z1Z3 1794 aa23.15■■□□□ 1.3
TVP23A-208ENST00000573857 PLPPR3Q6T4P5 718 aa23.15■■□□□ 1.3
TVP23A-208ENST00000573857 MLH3Q9UHC1 1453 aa23.15■■□□□ 1.3
TVP23A-208ENST00000573857 TRAPPC8Q9Y2L5 1435 aa23.15■■□□□ 1.3
TVP23A-208ENST00000573857 MYT1LQ9UL68 1186 aa23.14■■□□□ 1.29
TVP23A-208ENST00000573857 DIP2CQ9Y2E4 1556 aa23.14■■□□□ 1.29
TVP23A-208ENST00000573857 CDC42BPAQ5VT25 1732 aa23.13■■□□□ 1.29
TVP23A-208ENST00000573857 ITSN2Q9NZM3 1697 aa23.11■■□□□ 1.29
TVP23A-208ENST00000573857 REREQ9P2R6 1566 aa23.1■■□□□ 1.29
TVP23A-208ENST00000573857 ABCA6Q8N139 1617 aa23.1■■□□□ 1.29
TVP23A-208ENST00000573857 GPATCH8Q9UKJ3 1502 aaKnown RBP23.09■■□□□ 1.29
TVP23A-208ENST00000573857 HSPA2P54652 639 aa23.07■■□□□ 1.28
TVP23A-208ENST00000573857 ZNF777Q9ULD5 760 aaPredicted RBP23.06■■□□□ 1.28
TVP23A-208ENST00000573857 SAMD9LQ8IVG5 1584 aa23.06■■□□□ 1.28
TVP23A-208ENST00000573857 MTUS2Q5JR59 1369 aa23.05■■□□□ 1.28
TVP23A-208ENST00000573857 CEP162Q5TB80 1403 aa23.05■■□□□ 1.28
TVP23A-208ENST00000573857 AGLP35573 1532 aa23.04■■□□□ 1.28
TVP23A-208ENST00000573857 SYCP2Q9BX26 1530 aa23.03■■□□□ 1.28
TVP23A-208ENST00000573857 KIDINS220Q9ULH0 1771 aa23.03■■□□□ 1.28
TVP23A-208ENST00000573857 CCNB3Q8WWL7 1395 aa23.02■■□□□ 1.28
TVP23A-208ENST00000573857 CEBPAP49715 358 aaPredicted RBP23.02■■□□□ 1.28
TVP23A-208ENST00000573857 CFDP1Q9UEE9 299 aaPredicted RBP23.01■■□□□ 1.27
TVP23A-208ENST00000573857 KIAA1107Q9UPP5 1409 aa23■■□□□ 1.27
TVP23A-208ENST00000573857 HNRNPMP52272 730 aaKnown RBP eCLIP22.99■■□□□ 1.27
TVP23A-208ENST00000573857 PLEKHH2Q8IVE3 1493 aa22.98■■□□□ 1.27
TVP23A-208ENST00000573857 SPAG9O60271 1321 aaKnown RBP22.98■■□□□ 1.27
TVP23A-208ENST00000573857 EHBP1L1Q8N3D4 1523 aa22.96■■□□□ 1.27
TVP23A-208ENST00000573857 PREX1Q8TCU6 1659 aa22.96■■□□□ 1.27
TVP23A-208ENST00000573857 FBXO41Q8TF61 875 aa22.95■■□□□ 1.26
TVP23A-208ENST00000573857 TIAM1Q13009 1591 aa22.93■■□□□ 1.26
TVP23A-208ENST00000573857 ATP7AQ04656 1500 aa22.92■■□□□ 1.26
TVP23A-208ENST00000573857 ESF1Q9H501 851 aaKnown RBP22.92■■□□□ 1.26
TVP23A-208ENST00000573857 UHRF1BP1Q6BDS2 1440 aa22.91■■□□□ 1.26
TVP23A-208ENST00000573857 INO80Q9ULG1 1556 aaPredicted RBP22.91■■□□□ 1.26
TVP23A-208ENST00000573857 CNTLNQ9NXG0 1405 aa22.91■■□□□ 1.26
TVP23A-208ENST00000573857 C3P01024 1663 aa22.9■■□□□ 1.26
TVP23A-208ENST00000573857 ZNF644Q9H582 1327 aaPredicted RBP22.89■■□□□ 1.26
TVP23A-208ENST00000573857 PLXNC1O60486 1568 aa22.87■■□□□ 1.25
TVP23A-208ENST00000573857 SETD1BQ9UPS6 1966 aaKnown RBP22.87■■□□□ 1.25
TVP23A-208ENST00000573857 A2MP01023 1474 aa22.86■■□□□ 1.25
TVP23A-208ENST00000573857 MBD5Q9P267 1494 aa22.85■■□□□ 1.25
TVP23A-208ENST00000573857 SUPT6HQ7KZ85 1726 aaKnown RBP22.83■■□□□ 1.25
TVP23A-208ENST00000573857 NCOA2Q15596 1464 aa22.83■■□□□ 1.25
TVP23A-208ENST00000573857 LOC105371045A0A1W2PR82 267 aa22.82■■□□□ 1.24
TVP23A-208ENST00000573857 MROH2AA6NES4 1674 aa22.81■■□□□ 1.24
TVP23A-208ENST00000573857 VPS8Q8N3P4 1428 aa22.8■■□□□ 1.24
TVP23A-208ENST00000573857 ZMYM3Q14202 1370 aa22.79■■□□□ 1.24
TVP23A-208ENST00000573857 STRCQ7RTU9 1775 aa22.79■■□□□ 1.24
TVP23A-208ENST00000573857 RTEL1-TNFRSF6BF6WH68 1400 aa22.79■■□□□ 1.24
TVP23A-208ENST00000573857 NPATQ14207 1427 aa22.79■■□□□ 1.24
TVP23A-208ENST00000573857 DMRT2Q9Y5R5 561 aa22.78■■□□□ 1.24
TVP23A-208ENST00000573857 ADGBQ8N7X0 1667 aa22.77■■□□□ 1.24
TVP23A-208ENST00000573857 CERKQ8TCT0 537 aa22.76■■□□□ 1.23
TVP23A-208ENST00000573857 CAMSAP2Q08AD1 1489 aa22.76■■□□□ 1.23
TVP23A-208ENST00000573857 CCDC141Q6ZP82 1450 aa22.75■■□□□ 1.23
TVP23A-208ENST00000573857 GGT6Q6P531 493 aa22.75■■□□□ 1.23
TVP23A-208ENST00000573857 LRRC9Q6ZRR7 1453 aa22.73■■□□□ 1.23
TVP23A-208ENST00000573857 CLTCQ00610 1675 aaKnown RBP22.73■■□□□ 1.23
TVP23A-208ENST00000573857 PPP6R1Q9UPN7 881 aa22.72■■□□□ 1.23
TVP23A-208ENST00000573857 DHX29Q7Z478 1369 aaKnown RBP22.72■■□□□ 1.23
TVP23A-208ENST00000573857 RSPH4AQ5TD94 716 aa22.71■■□□□ 1.23
TVP23A-208ENST00000573857 PTPRTO14522 1441 aa22.7■■□□□ 1.22
TVP23A-208ENST00000573857 NCOA1Q15788 1441 aa22.7■■□□□ 1.22
TVP23A-208ENST00000573857 PTPRKQ15262 1439 aa22.69■■□□□ 1.22
TVP23A-208ENST00000573857 MAP3K1Q13233 1512 aa22.67■■□□□ 1.22
TVP23A-208ENST00000573857 ARHGEF5Q12774 1597 aa22.67■■□□□ 1.22
TVP23A-208ENST00000573857 CAMSAP1Q5T5Y3 1602 aa22.64■■□□□ 1.22
TVP23A-208ENST00000573857 KIF3BO15066 747 aa22.64■■□□□ 1.21
TVP23A-208ENST00000573857 KANK4Q5T7N3 995 aaPredicted RBP22.64■■□□□ 1.21
TVP23A-208ENST00000573857 MYO3AQ8NEV4 1616 aa22.64■■□□□ 1.21
TVP23A-208ENST00000573857 TSPY4P0CV99 314 aa22.62■■□□□ 1.21
TVP23A-208ENST00000573857 TSPY10P0CW01 314 aa22.62■■□□□ 1.21
TVP23A-208ENST00000573857 ZNF142P52746 1687 aaPredicted RBP22.62■■□□□ 1.21
TVP23A-208ENST00000573857 CEP170BQ9Y4F5 1589 aaPredicted RBP22.6■■□□□ 1.21
TVP23A-208ENST00000573857 FAM135AQ9P2D6 1515 aa22.6■■□□□ 1.21
TVP23A-208ENST00000573857 KDM5DQ9BY66 1539 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms