RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 TCOF1Q13428 1488 aaKnown RBP23.49■■□□□ 1.35
VPS53-215ENST00000573028 HECW1Q76N89 1606 aa23.48■■□□□ 1.35
VPS53-215ENST00000573028 ZNF777Q9ULD5 760 aaPredicted RBP23.48■■□□□ 1.35
VPS53-215ENST00000573028 MSH5O43196 834 aa23.47■■□□□ 1.35
VPS53-215ENST00000573028 B4GALNT3Q6L9W6 998 aa23.46■■□□□ 1.35
VPS53-215ENST00000573028 IQGAP2Q13576 1575 aa23.44■■□□□ 1.34
VPS53-215ENST00000573028 ERICH6Q7L0X2 663 aa23.44■■□□□ 1.34
VPS53-215ENST00000573028 MIA2Q96PC5 1412 aa23.43■■□□□ 1.34
VPS53-215ENST00000573028 KIF7Q2M1P5 1343 aa23.43■■□□□ 1.34
VPS53-215ENST00000573028 GCC2Q8IWJ2 1684 aa23.43■■□□□ 1.34
VPS53-215ENST00000573028 PPP4R2Q9NY27 417 aa23.42■■□□□ 1.34
VPS53-215ENST00000573028 KIF21AQ7Z4S6 1674 aa23.42■■□□□ 1.34
VPS53-215ENST00000573028 ANKRD30BQ9BXX2 1392 aa23.41■■□□□ 1.34
VPS53-215ENST00000573028 NCOA1Q15788 1441 aa23.41■■□□□ 1.34
VPS53-215ENST00000573028 AKNAQ7Z591 1439 aa23.4■■□□□ 1.34
VPS53-215ENST00000573028 DAPK1P53355 1430 aa23.39■■□□□ 1.34
VPS53-215ENST00000573028 TARBP1Q13395 1621 aaKnown RBP23.38■■□□□ 1.33
VPS53-215ENST00000573028 ABCC5O15440 1437 aa23.36■■□□□ 1.33
VPS53-215ENST00000573028 CFDP1Q9UEE9 299 aaPredicted RBP23.35■■□□□ 1.33
VPS53-215ENST00000573028 RPRD2Q5VT52 1461 aaKnown RBP23.35■■□□□ 1.33
VPS53-215ENST00000573028 WDR62O43379 1518 aa23.35■■□□□ 1.33
VPS53-215ENST00000573028 ZBED9Q6R2W3 1325 aa23.34■■□□□ 1.33
VPS53-215ENST00000573028 FBLN2P98095 1184 aa23.31■■□□□ 1.32
VPS53-215ENST00000573028 PBRM1Q86U86 1689 aa23.3■■□□□ 1.32
VPS53-215ENST00000573028 PKD2Q13563 968 aa23.29■■□□□ 1.32
VPS53-215ENST00000573028 TEX14Q8IWB6 1497 aa23.29■■□□□ 1.32
VPS53-215ENST00000573028 ROCK1Q13464 1354 aa23.28■■□□□ 1.32
VPS53-215ENST00000573028 FANCIQ9NVI1 1328 aa23.27■■□□□ 1.32
VPS53-215ENST00000573028 ERICH6BQ5W0A0 696 aa23.27■■□□□ 1.32
VPS53-215ENST00000573028 ADAMTS12P58397 1594 aa23.27■■□□□ 1.32
VPS53-215ENST00000573028 ZNF608Q9ULD9 1512 aaPredicted RBP23.27■■□□□ 1.32
VPS53-215ENST00000573028 PRG4Q92954 1404 aaPredicted RBP23.27■■□□□ 1.31
VPS53-215ENST00000573028 BCL11AQ9H165 835 aa23.25■■□□□ 1.31
VPS53-215ENST00000573028 KDM2AQ9Y2K7 1162 aa23.25■■□□□ 1.31
VPS53-215ENST00000573028 NUP153P49790 1475 aaKnown RBP23.24■■□□□ 1.31
VPS53-215ENST00000573028 SPATA31E1Q6ZUB1 1445 aa23.23■■□□□ 1.31
VPS53-215ENST00000573028 USP47Q96K76 1375 aa23.23■■□□□ 1.31
VPS53-215ENST00000573028 DNMT1P26358 1616 aaKnown RBP23.2■■□□□ 1.3
VPS53-215ENST00000573028 DISP1Q96F81 1524 aa23.18■■□□□ 1.3
VPS53-215ENST00000573028 TMC1Q8TDI8 760 aa23.18■■□□□ 1.3
VPS53-215ENST00000573028 CHMP7Q8WUX9 453 aaPredicted RBP23.18■■□□□ 1.3
VPS53-215ENST00000573028 PZPP20742 1482 aa23.17■■□□□ 1.3
VPS53-215ENST00000573028 CARD11Q9BXL7 1154 aa23.16■■□□□ 1.3
VPS53-215ENST00000573028 MRC2Q9UBG0 1479 aa23.16■■□□□ 1.3
VPS53-215ENST00000573028 KIAA0586Q9BVV6 1533 aa23.16■■□□□ 1.3
VPS53-215ENST00000573028 CAMSAP2Q08AD1 1489 aa23.15■■□□□ 1.3
VPS53-215ENST00000573028 CCDC136Q96JN2 1154 aa23.15■■□□□ 1.3
VPS53-215ENST00000573028 SALL2Q9Y467 1007 aaPredicted RBP23.14■■□□□ 1.3
VPS53-215ENST00000573028 KIAA0556O60303 1618 aa23.14■■□□□ 1.29
VPS53-215ENST00000573028 PLB1Q6P1J6 1458 aa23.13■■□□□ 1.29
VPS53-215ENST00000573028 DHX29Q7Z478 1369 aaKnown RBP23.13■■□□□ 1.29
VPS53-215ENST00000573028 NUDCQ9Y266 331 aa23.13■■□□□ 1.29
VPS53-215ENST00000573028 KIAA1107Q9UPP5 1409 aa23.12■■□□□ 1.29
VPS53-215ENST00000573028 TROQ12816 1431 aaPredicted RBP23.12■■□□□ 1.29
VPS53-215ENST00000573028 NUP155O75694 1391 aa23.11■■□□□ 1.29
VPS53-215ENST00000573028 RAPGEF6Q8TEU7 1601 aa23.11■■□□□ 1.29
VPS53-215ENST00000573028 ANKRD30AQ9BXX3 1397 aa23.1■■□□□ 1.29
VPS53-215ENST00000573028 ST20-MTHFSA0A0A6YYL1 179 aa23.08■■□□□ 1.29
VPS53-215ENST00000573028 DCAF11Q8TEB1 546 aa23.08■■□□□ 1.29
VPS53-215ENST00000573028 GPATCH8Q9UKJ3 1502 aaKnown RBP23.07■■□□□ 1.28
VPS53-215ENST00000573028 ANKRD50Q9ULJ7 1429 aa23.07■■□□□ 1.28
VPS53-215ENST00000573028 PLEKHD1A6NEE1 506 aa23.06■■□□□ 1.28
VPS53-215ENST00000573028 GRIN2AQ12879 1464 aa23.06■■□□□ 1.28
VPS53-215ENST00000573028 SMG6Q86US8 1419 aaKnown RBP23.06■■□□□ 1.28
VPS53-215ENST00000573028 IFT140Q96RY7 1462 aa23.05■■□□□ 1.28
VPS53-215ENST00000573028 PNISRQ8TF01 805 aaKnown RBP23.05■■□□□ 1.28
VPS53-215ENST00000573028 TSPY4P0CV99 314 aa23.04■■□□□ 1.28
VPS53-215ENST00000573028 TSPY10P0CW01 314 aa23.04■■□□□ 1.28
VPS53-215ENST00000573028 BCORL1Q5H9F3 1711 aa23.04■■□□□ 1.28
VPS53-215ENST00000573028 HNRNPMP52272 730 aaKnown RBP eCLIP23.03■■□□□ 1.283e-6■■■□□ 17.4
VPS53-215ENST00000573028 KIF14Q15058 1648 aa23.02■■□□□ 1.28
VPS53-215ENST00000573028 NBR1Q14596 966 aa23.02■■□□□ 1.28
VPS53-215ENST00000573028 JPH4Q96JJ6 628 aa23.02■■□□□ 1.28
VPS53-215ENST00000573028 RGL3Q3MIN7 710 aa23.01■■□□□ 1.27
VPS53-215ENST00000573028 MBD5Q9P267 1494 aa22.99■■□□□ 1.27
VPS53-215ENST00000573028 PAK3O75914 559 aaPredicted RBP22.97■■□□□ 1.27
VPS53-215ENST00000573028 NOP58Q9Y2X3 529 aaKnown RBP22.97■■□□□ 1.27
VPS53-215ENST00000573028 POLR1AO95602 1720 aaPredicted RBP22.95■■□□□ 1.26
VPS53-215ENST00000573028 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.94■■□□□ 1.26
VPS53-215ENST00000573028 KIF15Q9NS87 1388 aa22.94■■□□□ 1.26
VPS53-215ENST00000573028 C9orf84Q5VXU9 1444 aa22.94■■□□□ 1.26
VPS53-215ENST00000573028 CARMIL2Q6F5E8 1435 aa22.93■■□□□ 1.26
VPS53-215ENST00000573028 ARID4BQ4LE39 1312 aaPredicted RBP22.93■■□□□ 1.26
VPS53-215ENST00000573028 ROCK2O75116 1388 aaKnown RBP22.93■■□□□ 1.26
VPS53-215ENST00000573028 KDM5CP41229 1560 aa22.92■■□□□ 1.26
VPS53-215ENST00000573028 ITSN2Q9NZM3 1697 aa22.92■■□□□ 1.26
VPS53-215ENST00000573028 ANP32AP39687 249 aaKnown RBP22.91■■□□□ 1.26
VPS53-215ENST00000573028 ADGRL2O95490 1459 aa22.91■■□□□ 1.26
VPS53-215ENST00000573028 EIF4G3O43432 1585 aaKnown RBP22.91■■□□□ 1.26
VPS53-215ENST00000573028 MYBBP1AQ9BQG0 1328 aaKnown RBP22.91■■□□□ 1.26
VPS53-215ENST00000573028 ADGBQ8N7X0 1667 aa22.9■■□□□ 1.26
VPS53-215ENST00000573028 NPM2Q86SE8 214 aaKnown RBP22.89■■□□□ 1.25
VPS53-215ENST00000573028 RNF123Q5XPI4 1314 aa22.89■■□□□ 1.25
VPS53-215ENST00000573028 RALGAPBQ86X10 1494 aa22.88■■□□□ 1.25
VPS53-215ENST00000573028 ERCC6Q03468 1493 aa22.88■■□□□ 1.25
VPS53-215ENST00000573028 EXOC6Q8TAG9 804 aa22.87■■□□□ 1.25
VPS53-215ENST00000573028 CC2D1BQ5T0F9 858 aaKnown RBP22.87■■□□□ 1.25
VPS53-215ENST00000573028 RALBP1Q15311 655 aa22.86■■□□□ 1.25
VPS53-215ENST00000573028 NBPF1Q3BBV0 1214 aa22.86■■□□□ 1.25
VPS53-215ENST00000573028 DEKP35659 375 aaKnown RBP22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms