RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 CLIP1P30622 1438 aa29.52■■■□□ 2.32
CHD3-214ENST00000572579 PCF11O94913 1555 aaKnown RBP29.52■■■□□ 2.32
CHD3-214ENST00000572579 AFAP1Q8N556 730 aa29.49■■■□□ 2.31
CHD3-214ENST00000572579 BCORL1Q5H9F3 1711 aa29.48■■■□□ 2.31
CHD3-214ENST00000572579 MAGI2Q86UL8 1455 aa29.47■■■□□ 2.31
CHD3-214ENST00000572579 SIGLEC1Q9BZZ2 1709 aa29.46■■■□□ 2.31
CHD3-214ENST00000572579 ZFYVE16Q7Z3T8 1539 aa29.45■■■□□ 2.31
CHD3-214ENST00000572579 CCDC18Q5T9S5 1454 aa29.42■■■□□ 2.3
CHD3-214ENST00000572579 MADDQ8WXG6 1647 aa29.42■■■□□ 2.3
CHD3-214ENST00000572579 ARHGAP5Q13017 1502 aa29.41■■■□□ 2.3
CHD3-214ENST00000572579 MYO5CQ9NQX4 1742 aa29.41■■■□□ 2.3
CHD3-214ENST00000572579 FYCO1Q9BQS8 1478 aa29.41■■■□□ 2.3
CHD3-214ENST00000572579 MLECQ14165 292 aa29.38■■■□□ 2.29
CHD3-214ENST00000572579 ATP10AO60312 1499 aa29.37■■■□□ 2.29
CHD3-214ENST00000572579 ARHGEF12Q9NZN5 1544 aa29.37■■■□□ 2.29
CHD3-214ENST00000572579 TRAPPC8Q9Y2L5 1435 aa29.34■■■□□ 2.29
CHD3-214ENST00000572579 ZNF518AQ6AHZ1 1483 aa29.33■■■□□ 2.29
CHD3-214ENST00000572579 CDC42BPBQ9Y5S2 1711 aa29.33■■■□□ 2.29
CHD3-214ENST00000572579 KDM5CP41229 1560 aa29.3■■■□□ 2.28
CHD3-214ENST00000572579 C9orf84Q5VXU9 1444 aa29.29■■■□□ 2.28
CHD3-214ENST00000572579 ILDR1Q86SU0 546 aaPredicted RBP29.29■■■□□ 2.28
CHD3-214ENST00000572579 PLPPR3Q6T4P5 718 aa29.28■■■□□ 2.28
CHD3-214ENST00000572579 GPATCH8Q9UKJ3 1502 aaKnown RBP29.27■■■□□ 2.28
CHD3-214ENST00000572579 RIMS1Q86UR5 1692 aaKnown RBP29.27■■■□□ 2.28
CHD3-214ENST00000572579 PREX2Q70Z35 1606 aa29.26■■■□□ 2.27
CHD3-214ENST00000572579 LMTK3Q96Q04 1460 aa29.25■■■□□ 2.27
CHD3-214ENST00000572579 ABCC1P33527 1531 aa29.25■■■□□ 2.27
CHD3-214ENST00000572579 MLH3Q9UHC1 1453 aa29.24■■■□□ 2.27
CHD3-214ENST00000572579 LOC105371045A0A1W2PR82 267 aa29.24■■■□□ 2.27
CHD3-214ENST00000572579 CEP162Q5TB80 1403 aa29.23■■■□□ 2.27
CHD3-214ENST00000572579 ZNF777Q9ULD5 760 aaPredicted RBP29.23■■■□□ 2.27
CHD3-214ENST00000572579 MYT1LQ9UL68 1186 aa29.21■■■□□ 2.27
CHD3-214ENST00000572579 DIP2CQ9Y2E4 1556 aa29.19■■■□□ 2.26
CHD3-214ENST00000572579 CEBPAP49715 358 aaPredicted RBP29.19■■■□□ 2.26
CHD3-214ENST00000572579 HNRNPMP52272 730 aaKnown RBP eCLIP29.19■■■□□ 2.26
CHD3-214ENST00000572579 CDC42BPAQ5VT25 1732 aa29.19■■■□□ 2.26
CHD3-214ENST00000572579 HSPA2P54652 639 aa29.18■■■□□ 2.26
CHD3-214ENST00000572579 SAMD9LQ8IVG5 1584 aa29.14■■■□□ 2.26
CHD3-214ENST00000572579 CFDP1Q9UEE9 299 aaPredicted RBP29.14■■■□□ 2.26
CHD3-214ENST00000572579 MTUS2Q5JR59 1369 aa29.13■■■□□ 2.25
CHD3-214ENST00000572579 ABCA6Q8N139 1617 aa29.13■■■□□ 2.25
CHD3-214ENST00000572579 ITSN2Q9NZM3 1697 aa29.12■■■□□ 2.25
CHD3-214ENST00000572579 ZNF644Q9H582 1327 aaPredicted RBP29.12■■■□□ 2.25
CHD3-214ENST00000572579 CCNB3Q8WWL7 1395 aa29.12■■■□□ 2.25
CHD3-214ENST00000572579 REREQ9P2R6 1566 aa29.09■■■□□ 2.25
CHD3-214ENST00000572579 SYCP2Q9BX26 1530 aa29.09■■■□□ 2.25
CHD3-214ENST00000572579 KIAA1107Q9UPP5 1409 aa29.08■■■□□ 2.25
CHD3-214ENST00000572579 FER1L4A9Z1Z3 1794 aa29.08■■■□□ 2.25
CHD3-214ENST00000572579 KIDINS220Q9ULH0 1771 aa29.08■■■□□ 2.25
CHD3-214ENST00000572579 SPAG9O60271 1321 aaKnown RBP29.06■■■□□ 2.24
CHD3-214ENST00000572579 AGLP35573 1532 aa29.05■■■□□ 2.24
CHD3-214ENST00000572579 TIAM1Q13009 1591 aa29■■■□□ 2.23
CHD3-214ENST00000572579 MBD5Q9P267 1494 aa28.98■■■□□ 2.23
CHD3-214ENST00000572579 EHBP1L1Q8N3D4 1523 aa28.98■■■□□ 2.23
CHD3-214ENST00000572579 PLEKHH2Q8IVE3 1493 aa28.97■■■□□ 2.23
CHD3-214ENST00000572579 NCOA2Q15596 1464 aa28.91■■■□□ 2.22
CHD3-214ENST00000572579 ATP7AQ04656 1500 aa28.91■■■□□ 2.22
CHD3-214ENST00000572579 VPS8Q8N3P4 1428 aa28.9■■■□□ 2.22
CHD3-214ENST00000572579 KANK4Q5T7N3 995 aaPredicted RBP28.89■■■□□ 2.22
CHD3-214ENST00000572579 INO80Q9ULG1 1556 aaPredicted RBP28.88■■■□□ 2.21
CHD3-214ENST00000572579 A2MP01023 1474 aa28.88■■■□□ 2.21
CHD3-214ENST00000572579 ESF1Q9H501 851 aaKnown RBP28.87■■■□□ 2.21
CHD3-214ENST00000572579 FBXO41Q8TF61 875 aa28.85■■■□□ 2.21
CHD3-214ENST00000572579 PLXNC1O60486 1568 aa28.84■■■□□ 2.21
CHD3-214ENST00000572579 ZMYM3Q14202 1370 aa28.84■■■□□ 2.21
CHD3-214ENST00000572579 C3P01024 1663 aa28.83■■■□□ 2.21
CHD3-214ENST00000572579 CNTLNQ9NXG0 1405 aa28.83■■■□□ 2.21
CHD3-214ENST00000572579 UHRF1BP1Q6BDS2 1440 aa28.82■■■□□ 2.2
CHD3-214ENST00000572579 LRRC9Q6ZRR7 1453 aa28.82■■■□□ 2.2
CHD3-214ENST00000572579 GGT6Q6P531 493 aa28.81■■■□□ 2.2
CHD3-214ENST00000572579 PREX1Q8TCU6 1659 aa28.8■■■□□ 2.2
CHD3-214ENST00000572579 RTEL1-TNFRSF6BF6WH68 1400 aa28.8■■■□□ 2.2
CHD3-214ENST00000572579 SUPT6HQ7KZ85 1726 aaKnown RBP28.79■■■□□ 2.2
CHD3-214ENST00000572579 CAMSAP2Q08AD1 1489 aa28.78■■■□□ 2.2
CHD3-214ENST00000572579 SETD1BQ9UPS6 1966 aaKnown RBP28.77■■■□□ 2.2
CHD3-214ENST00000572579 DHX29Q7Z478 1369 aaKnown RBP28.76■■■□□ 2.2
CHD3-214ENST00000572579 RSPH4AQ5TD94 716 aa28.73■■■□□ 2.19
CHD3-214ENST00000572579 STRCQ7RTU9 1775 aa28.73■■■□□ 2.19
CHD3-214ENST00000572579 CCDC141Q6ZP82 1450 aa28.72■■■□□ 2.19
CHD3-214ENST00000572579 NPATQ14207 1427 aa28.71■■■□□ 2.19
CHD3-214ENST00000572579 MAP3K1Q13233 1512 aa28.7■■■□□ 2.19
CHD3-214ENST00000572579 CERKQ8TCT0 537 aa28.7■■■□□ 2.18
CHD3-214ENST00000572579 PPP6R1Q9UPN7 881 aa28.7■■■□□ 2.18
CHD3-214ENST00000572579 PTPRKQ15262 1439 aa28.69■■■□□ 2.18
CHD3-214ENST00000572579 KIF3BO15066 747 aa28.67■■■□□ 2.18
CHD3-214ENST00000572579 ADGBQ8N7X0 1667 aa28.65■■■□□ 2.18
CHD3-214ENST00000572579 DMRT2Q9Y5R5 561 aa28.65■■■□□ 2.18
CHD3-214ENST00000572579 MROH2AA6NES4 1674 aa28.64■■■□□ 2.18
CHD3-214ENST00000572579 CLTCQ00610 1675 aaKnown RBP28.64■■■□□ 2.18
CHD3-214ENST00000572579 TSPY4P0CV99 314 aa28.62■■■□□ 2.17
CHD3-214ENST00000572579 TSPY10P0CW01 314 aa28.62■■■□□ 2.17
CHD3-214ENST00000572579 ARHGEF5Q12774 1597 aa28.62■■■□□ 2.17
CHD3-214ENST00000572579 NCOA1Q15788 1441 aa28.61■■■□□ 2.17
CHD3-214ENST00000572579 FBXO31Q5XUX0 539 aaPredicted RBP28.6■■■□□ 2.17
CHD3-214ENST00000572579 PTPRTO14522 1441 aa28.6■■■□□ 2.17
CHD3-214ENST00000572579 MYOM3Q5VTT5 1437 aa28.6■■■□□ 2.17
CHD3-214ENST00000572579 NCKAP5LQ9HCH0 1330 aa28.57■■■□□ 2.16
CHD3-214ENST00000572579 MIA2Q96PC5 1412 aa28.57■■■□□ 2.16
CHD3-214ENST00000572579 CAMSAP1Q5T5Y3 1602 aa28.54■■■□□ 2.16
CHD3-214ENST00000572579 WASHC2CQ9Y4E1 1318 aa28.52■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms