RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 TEX14Q8IWB6 1497 aa10.42□□□□□ -0.74
VPS53-208ENST00000570650 CUL7Q14999 1698 aa10.42□□□□□ -0.74
VPS53-208ENST00000570650 VASPP50552 380 aaPredicted RBP10.42□□□□□ -0.74
VPS53-208ENST00000570650 PLCD3Q8N3E9 789 aa10.41□□□□□ -0.74
VPS53-208ENST00000570650 EPRSP07814 1512 aaKnown RBP10.41□□□□□ -0.74
VPS53-208ENST00000570650 KIF27Q86VH2 1401 aa10.41□□□□□ -0.74
VPS53-208ENST00000570650 MAP3K4Q9Y6R4 1608 aa10.4□□□□□ -0.74
VPS53-208ENST00000570650 FBXO41Q8TF61 875 aa10.4□□□□□ -0.74
VPS53-208ENST00000570650 UACAQ9BZF9 1416 aa10.4□□□□□ -0.75
VPS53-208ENST00000570650 KDM5BQ9UGL1 1544 aa10.38□□□□□ -0.75
VPS53-208ENST00000570650 CARMIL1Q5VZK9 1371 aa10.37□□□□□ -0.75
VPS53-208ENST00000570650 IQGAP2Q13576 1575 aa10.36□□□□□ -0.75
VPS53-208ENST00000570650 HAX1O00165 279 aa10.35□□□□□ -0.75
VPS53-208ENST00000570650 PLEKHG5O94827 1062 aa10.34□□□□□ -0.75
VPS53-208ENST00000570650 DISP1Q96F81 1524 aa10.33□□□□□ -0.76
VPS53-208ENST00000570650 ZCCHC11Q5TAX3 1644 aaKnown RBP10.33□□□□□ -0.76
VPS53-208ENST00000570650 C19orf67A6NJJ6 358 aa10.33□□□□□ -0.76
VPS53-208ENST00000570650 EVX2Q03828 476 aa10.33□□□□□ -0.76
VPS53-208ENST00000570650 WDR7Q9Y4E6 1490 aa10.32□□□□□ -0.76
VPS53-208ENST00000570650 MAGI3Q5TCQ9 1506 aa10.31□□□□□ -0.76
VPS53-208ENST00000570650 UGGT2Q9NYU1 1516 aa10.3□□□□□ -0.76
VPS53-208ENST00000570650 CD109Q6YHK3 1445 aa10.3□□□□□ -0.76
VPS53-208ENST00000570650 IFNLR1Q8IU57 520 aaPredicted RBP10.28□□□□□ -0.76
VPS53-208ENST00000570650 KIF21BO75037 1637 aa10.28□□□□□ -0.76
VPS53-208ENST00000570650 KIAA0556O60303 1618 aa10.27□□□□□ -0.77
VPS53-208ENST00000570650 CD44P16070 742 aaKnown RBP10.27□□□□□ -0.77
VPS53-208ENST00000570650 CFAP43Q8NDM7 1665 aa10.27□□□□□ -0.77
VPS53-208ENST00000570650 ZBTB47Q9UFB7 747 aaPredicted RBP10.26□□□□□ -0.77
VPS53-208ENST00000570650 KLHL34Q8N239 644 aa10.25□□□□□ -0.77
VPS53-208ENST00000570650 KCNH8Q96L42 1107 aa10.25□□□□□ -0.77
VPS53-208ENST00000570650 PTPRMP28827 1452 aa10.24□□□□□ -0.77
VPS53-208ENST00000570650 RAPGEF2Q9Y4G8 1499 aa10.23□□□□□ -0.77
VPS53-208ENST00000570650 ARAP3Q8WWN8 1544 aa10.23□□□□□ -0.77
VPS53-208ENST00000570650 NUBP1P53384 320 aa10.23□□□□□ -0.77
VPS53-208ENST00000570650 RASEFQ8IZ41 740 aa10.23□□□□□ -0.77
VPS53-208ENST00000570650 ADAMTSL3P82987 1691 aa10.22□□□□□ -0.77
VPS53-208ENST00000570650 LMTK3Q96Q04 1460 aa10.22□□□□□ -0.77
VPS53-208ENST00000570650 PCF11O94913 1555 aaKnown RBP10.21□□□□□ -0.78
VPS53-208ENST00000570650 ABCA8O94911 1581 aa10.2□□□□□ -0.78
VPS53-208ENST00000570650 GOLGA3Q08378 1498 aa10.19□□□□□ -0.78
VPS53-208ENST00000570650 PHLDB1Q86UU1 1377 aa10.19□□□□□ -0.78
VPS53-208ENST00000570650 ZRANB1Q9UGI0 708 aa10.19□□□□□ -0.78
VPS53-208ENST00000570650 SP7Q8TDD2 431 aaPredicted RBP10.18□□□□□ -0.78
VPS53-208ENST00000570650 TSPYL2Q9H2G4 693 aaPredicted RBP10.18□□□□□ -0.78
VPS53-208ENST00000570650 BCORL1Q5H9F3 1711 aa10.16□□□□□ -0.78
VPS53-208ENST00000570650 MADDQ8WXG6 1647 aa10.15□□□□□ -0.78
VPS53-208ENST00000570650 ARID4BQ4LE39 1312 aaPredicted RBP10.15□□□□□ -0.78
VPS53-208ENST00000570650 PAK3O75914 559 aaPredicted RBP10.15□□□□□ -0.78
VPS53-208ENST00000570650 RAPGEF3O95398 923 aa10.15□□□□□ -0.78
VPS53-208ENST00000570650 SPOCK2Q92563 424 aa10.15□□□□□ -0.78
VPS53-208ENST00000570650 CERKQ8TCT0 537 aa10.14□□□□□ -0.79
VPS53-208ENST00000570650 CTTNBP2Q8WZ74 1663 aa10.14□□□□□ -0.79
VPS53-208ENST00000570650 NEO1Q92859 1461 aa10.13□□□□□ -0.79
VPS53-208ENST00000570650 FAM9AQ8IZU1 332 aaPredicted RBP10.13□□□□□ -0.79
VPS53-208ENST00000570650 ZNF579Q8NAF0 562 aaKnown RBP10.13□□□□□ -0.79
VPS53-208ENST00000570650 ABCA9Q8IUA7 1624 aa10.13□□□□□ -0.79
VPS53-208ENST00000570650 ATP10BO94823 1461 aa10.12□□□□□ -0.79
VPS53-208ENST00000570650 ARID3CA6NKF2 412 aa10.12□□□□□ -0.79
VPS53-208ENST00000570650 HSPA2P54652 639 aa10.12□□□□□ -0.79
VPS53-208ENST00000570650 PHF12Q96QT6 1004 aa10.12□□□□□ -0.79
VPS53-208ENST00000570650 SOCS7O14512 581 aa10.11□□□□□ -0.79
VPS53-208ENST00000570650 FAM212AQ96EL1 285 aa10.11□□□□□ -0.79
VPS53-208ENST00000570650 CCDC61Q9Y6R9 512 aa10.11□□□□□ -0.79
VPS53-208ENST00000570650 RIMS1Q86UR5 1692 aaKnown RBP10.11□□□□□ -0.79
VPS53-208ENST00000570650 FRMPD1Q5SYB0 1578 aa10.1□□□□□ -0.79
VPS53-208ENST00000570650 ILDR2Q71H61 639 aa10.1□□□□□ -0.79
VPS53-208ENST00000570650 DISP3Q9P2K9 1392 aa10.1□□□□□ -0.79
VPS53-208ENST00000570650 ARHGEF40Q8TER5 1519 aa10.08□□□□□ -0.8
VPS53-208ENST00000570650 DCAF8Q5TAQ9 597 aa10.08□□□□□ -0.8
VPS53-208ENST00000570650 POGZQ7Z3K3 1410 aa10.07□□□□□ -0.8
VPS53-208ENST00000570650 GABBR2O75899 941 aa10.07□□□□□ -0.8
VPS53-208ENST00000570650 FANCAO15360 1455 aa10.06□□□□□ -0.8
VPS53-208ENST00000570650 DENND4BO75064 1496 aaPredicted RBP10.06□□□□□ -0.8
VPS53-208ENST00000570650 P3H3Q8IVL6 736 aa10.05□□□□□ -0.8
VPS53-208ENST00000570650 FHOD3Q2V2M9 1422 aa10.05□□□□□ -0.8
VPS53-208ENST00000570650 AKNAQ7Z591 1439 aa10.05□□□□□ -0.8
VPS53-208ENST00000570650 PRXQ9BXM0 1461 aa10.04□□□□□ -0.8
VPS53-208ENST00000570650 RICTORQ6R327 1708 aa10.04□□□□□ -0.8
VPS53-208ENST00000570650 KIF12Q96FN5 646 aa10.03□□□□□ -0.8
VPS53-208ENST00000570650 RAPGEF6Q8TEU7 1601 aa10.03□□□□□ -0.8
VPS53-208ENST00000570650 GSE1Q14687 1217 aa10.02□□□□□ -0.81
VPS53-208ENST00000570650 CIZ1Q9ULV3 898 aaPredicted RBP10.02□□□□□ -0.81
VPS53-208ENST00000570650 EFCAB5A4FU69 1503 aa10.02□□□□□ -0.81
VPS53-208ENST00000570650 ZMYM4Q5VZL5 1548 aa10.02□□□□□ -0.81
VPS53-208ENST00000570650 YEATS2Q9ULM3 1422 aa10.01□□□□□ -0.81
VPS53-208ENST00000570650 GALR2O43603 387 aaPredicted RBP10.01□□□□□ -0.81
VPS53-208ENST00000570650 MLECQ14165 292 aa10.01□□□□□ -0.81
VPS53-208ENST00000570650 ZFYVE16Q7Z3T8 1539 aa10.01□□□□□ -0.81
VPS53-208ENST00000570650 TTC37Q6PGP7 1564 aa10.01□□□□□ -0.81
VPS53-208ENST00000570650 CFAP74Q9C0B2 1584 aa10.01□□□□□ -0.81
VPS53-208ENST00000570650 MAGI2Q86UL8 1455 aa10□□□□□ -0.81
VPS53-208ENST00000570650 SPATA31D1Q6ZQQ2 1576 aa10□□□□□ -0.81
VPS53-208ENST00000570650 NUP153P49790 1475 aaKnown RBP9.99□□□□□ -0.81
VPS53-208ENST00000570650 FER1L4A9Z1Z3 1794 aa9.99□□□□□ -0.81
VPS53-208ENST00000570650 PLEKHD1A6NEE1 506 aa9.99□□□□□ -0.81
VPS53-208ENST00000570650 MAP3K13O43283 966 aa9.99□□□□□ -0.81
VPS53-208ENST00000570650 PYGBP11216 843 aa9.99□□□□□ -0.81
VPS53-208ENST00000570650 MS4A3Q96HJ5 214 aa9.99□□□□□ -0.81
VPS53-208ENST00000570650 SIGLEC1Q9BZZ2 1709 aa9.99□□□□□ -0.81
VPS53-208ENST00000570650 SAMD9Q5K651 1589 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms