RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CDK11AQ9UQ88 783 aaPredicted RBP12.08□□□□□ -0.48
VPS39-213ENST00000570062 CCDC18Q5T9S5 1454 aa12.08□□□□□ -0.48
VPS39-213ENST00000570062 CEP170Q5SW79 1584 aa12.06□□□□□ -0.48
VPS39-213ENST00000570062 CD44P16070 742 aaKnown RBP12.06□□□□□ -0.48
VPS39-213ENST00000570062 TIAM1Q13009 1591 aa12.05□□□□□ -0.48
VPS39-213ENST00000570062 SPDYE4A6NLX3 237 aa12.05□□□□□ -0.48
VPS39-213ENST00000570062 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
VPS39-213ENST00000570062 LRRC9Q6ZRR7 1453 aa12.05□□□□□ -0.48
VPS39-213ENST00000570062 DISP1Q96F81 1524 aa12.05□□□□□ -0.48
VPS39-213ENST00000570062 ZEB1P37275 1124 aaPredicted RBP12.04□□□□□ -0.48
VPS39-213ENST00000570062 KANK4Q5T7N3 995 aaPredicted RBP12.04□□□□□ -0.48
VPS39-213ENST00000570062 CYB5RLQ6IPT4 315 aa12.04□□□□□ -0.48
VPS39-213ENST00000570062 KIAA0556O60303 1618 aa12.03□□□□□ -0.48
VPS39-213ENST00000570062 MTUS2Q5JR59 1369 aa12.02□□□□□ -0.49
VPS39-213ENST00000570062 PCF11O94913 1555 aaKnown RBP12.01□□□□□ -0.49
VPS39-213ENST00000570062 HECW1Q76N89 1606 aa12□□□□□ -0.49
VPS39-213ENST00000570062 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12□□□□□ -0.49
VPS39-213ENST00000570062 RRBP1Q9P2E9 1410 aaKnown RBP12□□□□□ -0.49
VPS39-213ENST00000570062 TTBK1Q5TCY1 1321 aaPredicted RBP11.99□□□□□ -0.49
VPS39-213ENST00000570062 PRG4Q92954 1404 aaPredicted RBP11.99□□□□□ -0.49
VPS39-213ENST00000570062 PTPRGP23470 1445 aa11.98□□□□□ -0.49
VPS39-213ENST00000570062 CCNB3Q8WWL7 1395 aa11.98□□□□□ -0.49
VPS39-213ENST00000570062 CREBZFQ9NS37 354 aa11.97□□□□□ -0.49
VPS39-213ENST00000570062 CFAP43Q8NDM7 1665 aa11.97□□□□□ -0.49
VPS39-213ENST00000570062 EPRSP07814 1512 aaKnown RBP11.96□□□□□ -0.49
VPS39-213ENST00000570062 EHBP1L1Q8N3D4 1523 aa11.95□□□□□ -0.5
VPS39-213ENST00000570062 HRCP23327 699 aa11.94□□□□□ -0.5
VPS39-213ENST00000570062 ACIN1Q9UKV3 1341 aaKnown RBP11.93□□□□□ -0.5
VPS39-213ENST00000570062 PLEKHD1A6NEE1 506 aa11.93□□□□□ -0.5
VPS39-213ENST00000570062 CLCN6P51797 869 aa11.93□□□□□ -0.5
VPS39-213ENST00000570062 SHROOM2Q13796 1616 aa11.93□□□□□ -0.5
VPS39-213ENST00000570062 CHD1O14646 1710 aa11.92□□□□□ -0.5
VPS39-213ENST00000570062 RAPGEF6Q8TEU7 1601 aa11.92□□□□□ -0.5
VPS39-213ENST00000570062 CLASP1Q7Z460 1538 aa11.91□□□□□ -0.5
VPS39-213ENST00000570062 NUP153P49790 1475 aaKnown RBP11.9□□□□□ -0.5
VPS39-213ENST00000570062 MIA2Q96PC5 1412 aa11.9□□□□□ -0.5
VPS39-213ENST00000570062 UACAQ9BZF9 1416 aa11.9□□□□□ -0.5
VPS39-213ENST00000570062 LHX8Q68G74 356 aa11.89□□□□□ -0.51
VPS39-213ENST00000570062 ZRANB1Q9UGI0 708 aa11.89□□□□□ -0.51
VPS39-213ENST00000570062 PHLDB1Q86UU1 1377 aa11.89□□□□□ -0.51
VPS39-213ENST00000570062 ABCA8O94911 1581 aa11.88□□□□□ -0.51
VPS39-213ENST00000570062 TROQ12816 1431 aaPredicted RBP11.88□□□□□ -0.51
VPS39-213ENST00000570062 NCOA2Q15596 1464 aa11.88□□□□□ -0.51
VPS39-213ENST00000570062 PLB1Q6P1J6 1458 aa11.88□□□□□ -0.51
VPS39-213ENST00000570062 MYOM3Q5VTT5 1437 aa11.87□□□□□ -0.51
VPS39-213ENST00000570062 SUPT6HQ7KZ85 1726 aaKnown RBP11.87□□□□□ -0.51
VPS39-213ENST00000570062 POTEIP0CG38 1075 aa11.86□□□□□ -0.51
VPS39-213ENST00000570062 CCER1Q8TC90 406 aaPredicted RBP11.86□□□□□ -0.51
VPS39-213ENST00000570062 UHRF1BP1LA0JNW5 1464 aa11.86□□□□□ -0.51
VPS39-213ENST00000570062 FGD6Q6ZV73 1430 aa11.86□□□□□ -0.51
VPS39-213ENST00000570062 FAM50AQ14320 339 aaKnown RBP11.85□□□□□ -0.51
VPS39-213ENST00000570062 ZNF579Q8NAF0 562 aaKnown RBP11.85□□□□□ -0.51
VPS39-213ENST00000570062 CLSPNQ9HAW4 1339 aa11.85□□□□□ -0.51
VPS39-213ENST00000570062 ATP10BO94823 1461 aa11.83□□□□□ -0.52
VPS39-213ENST00000570062 CDK13Q14004 1512 aaKnown RBP11.82□□□□□ -0.52
VPS39-213ENST00000570062 DCBLD2Q96PD2 775 aa11.82□□□□□ -0.52
VPS39-213ENST00000570062 ABCC2Q92887 1545 aa11.81□□□□□ -0.52
VPS39-213ENST00000570062 RSPH4AQ5TD94 716 aa11.8□□□□□ -0.52
VPS39-213ENST00000570062 TCOF1Q13428 1488 aaKnown RBP11.8□□□□□ -0.52
VPS39-213ENST00000570062 PAK3O75914 559 aaPredicted RBP11.79□□□□□ -0.52
VPS39-213ENST00000570062 NPM1P06748 294 aaKnown RBP eCLIP11.79□□□□□ -0.52
VPS39-213ENST00000570062 CFDP1Q9UEE9 299 aaPredicted RBP11.79□□□□□ -0.52
VPS39-213ENST00000570062 MAGI3Q5TCQ9 1506 aa11.78□□□□□ -0.52
VPS39-213ENST00000570062 ARID3CA6NKF2 412 aa11.78□□□□□ -0.52
VPS39-213ENST00000570062 SETD5Q9C0A6 1442 aa11.77□□□□□ -0.53
VPS39-213ENST00000570062 KDM5BQ9UGL1 1544 aa11.76□□□□□ -0.53
VPS39-213ENST00000570062 ITGAEP38570 1179 aa11.76□□□□□ -0.53
VPS39-213ENST00000570062 LRRIQ1Q96JM4 1722 aa11.76□□□□□ -0.53
VPS39-213ENST00000570062 ADCY10Q96PN6 1610 aa11.75□□□□□ -0.53
VPS39-213ENST00000570062 MNX1P50219 401 aaPredicted RBP11.74□□□□□ -0.53
VPS39-213ENST00000570062 AKNAQ7Z591 1439 aa11.74□□□□□ -0.53
VPS39-213ENST00000570062 KIF14Q15058 1648 aa11.74□□□□□ -0.53
VPS39-213ENST00000570062 GALR2O43603 387 aaPredicted RBP11.73□□□□□ -0.53
VPS39-213ENST00000570062 ROCK1Q13464 1354 aa11.73□□□□□ -0.53
VPS39-213ENST00000570062 PTPN23Q9H3S7 1636 aa11.73□□□□□ -0.53
VPS39-213ENST00000570062 GPATCH8Q9UKJ3 1502 aaKnown RBP11.73□□□□□ -0.53
VPS39-213ENST00000570062 ERCC6L2Q5T890 1561 aa11.71□□□□□ -0.53
VPS39-213ENST00000570062 HFM1A2PYH4 1435 aa11.71□□□□□ -0.53
VPS39-213ENST00000570062 ITSN2Q9NZM3 1697 aa11.71□□□□□ -0.54
VPS39-213ENST00000570062 ABCC10Q5T3U5 1492 aa11.7□□□□□ -0.54
VPS39-213ENST00000570062 TSPY4P0CV99 314 aa11.7□□□□□ -0.54
VPS39-213ENST00000570062 TSPY10P0CW01 314 aa11.7□□□□□ -0.54
VPS39-213ENST00000570062 PROM2Q8N271 834 aa11.7□□□□□ -0.54
VPS39-213ENST00000570062 PLEKHH2Q8IVE3 1493 aa11.7□□□□□ -0.54
VPS39-213ENST00000570062 RAB3GAP2Q9H2M9 1393 aa11.69□□□□□ -0.54
VPS39-213ENST00000570062 EFCAB2Q5VUJ9 269 aa11.69□□□□□ -0.54
VPS39-213ENST00000570062 PHF12Q96QT6 1004 aa11.69□□□□□ -0.54
VPS39-213ENST00000570062 TIMELESSQ9UNS1 1208 aa11.67□□□□□ -0.54
VPS39-213ENST00000570062 KIAA1107Q9UPP5 1409 aa11.67□□□□□ -0.54
VPS39-213ENST00000570062 DAPK1P53355 1430 aa11.66□□□□□ -0.54
VPS39-213ENST00000570062 DHX57Q6P158 1386 aaKnown RBP11.66□□□□□ -0.54
VPS39-213ENST00000570062 ANKRD30AQ9BXX3 1397 aa11.66□□□□□ -0.54
VPS39-213ENST00000570062 KCNH8Q96L42 1107 aa11.65□□□□□ -0.54
VPS39-213ENST00000570062 ZNF777Q9ULD5 760 aaPredicted RBP11.65□□□□□ -0.54
VPS39-213ENST00000570062 ABCC5O15440 1437 aa11.65□□□□□ -0.54
VPS39-213ENST00000570062 PLCH2O75038 1416 aa11.65□□□□□ -0.54
VPS39-213ENST00000570062 ARAP3Q8WWN8 1544 aa11.65□□□□□ -0.55
VPS39-213ENST00000570062 CAMSAP2Q08AD1 1489 aa11.64□□□□□ -0.55
VPS39-213ENST00000570062 WDR7Q9Y4E6 1490 aa11.64□□□□□ -0.55
VPS39-213ENST00000570062 NAIPQ13075 1403 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms