RNA–Protein interactions for RNA: ENST00000569575.5

RAB40C-212, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-212ENST00000569575 CFAP74Q9C0B2 1584 aa36.12■■■■□ 3.37
RAB40C-212ENST00000569575 CFDP1Q9UEE9 299 aaPredicted RBP36.12■■■■□ 3.37
RAB40C-212ENST00000569575 NEO1Q92859 1461 aa36.11■■■■□ 3.37
RAB40C-212ENST00000569575 CDC42BPBQ9Y5S2 1711 aa36.09■■■■□ 3.37
RAB40C-212ENST00000569575 ARHGAP5Q13017 1502 aa36.08■■■■□ 3.37
RAB40C-212ENST00000569575 FANCAO15360 1455 aa36.07■■■■□ 3.37
RAB40C-212ENST00000569575 PPARGC1BQ86YN6 1023 aaKnown RBP36.05■■■■□ 3.36
RAB40C-212ENST00000569575 PPRC1Q5VV67 1664 aaKnown RBP36.03■■■■□ 3.36
RAB40C-212ENST00000569575 PLEKHH2Q8IVE3 1493 aa36.02■■■■□ 3.36
RAB40C-212ENST00000569575 TSPOAP1O95153 1857 aa36.02■■■■□ 3.36
RAB40C-212ENST00000569575 FGD6Q6ZV73 1430 aa36■■■■□ 3.35
RAB40C-212ENST00000569575 AKNAQ7Z591 1439 aa35.97■■■■□ 3.35
RAB40C-212ENST00000569575 KIAA1107Q9UPP5 1409 aa35.97■■■■□ 3.35
RAB40C-212ENST00000569575 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.94■■■■□ 3.341e-6■■■□□ 17.3
RAB40C-212ENST00000569575 RSPH4AQ5TD94 716 aa35.94■■■■□ 3.34
RAB40C-212ENST00000569575 TCOF1Q13428 1488 aaKnown RBP35.92■■■■□ 3.34
RAB40C-212ENST00000569575 RRBP1Q9P2E9 1410 aaKnown RBP35.91■■■■□ 3.34
RAB40C-212ENST00000569575 ZNF777Q9ULD5 760 aaPredicted RBP35.89■■■■□ 3.34
RAB40C-212ENST00000569575 PTPN23Q9H3S7 1636 aa35.89■■■■□ 3.34
RAB40C-212ENST00000569575 ADGRL1O94910 1474 aa35.88■■■■□ 3.33
RAB40C-212ENST00000569575 SAMD9LQ8IVG5 1584 aa35.88■■■■□ 3.33
RAB40C-212ENST00000569575 CAMSAP2Q08AD1 1489 aa35.86■■■■□ 3.33
RAB40C-212ENST00000569575 ABCC1P33527 1531 aa35.85■■■■□ 3.33
RAB40C-212ENST00000569575 SCAPERQ9BY12 1400 aa35.83■■■■□ 3.33
RAB40C-212ENST00000569575 DENND4BO75064 1496 aaPredicted RBP35.8■■■■□ 3.32
RAB40C-212ENST00000569575 ZNF644Q9H582 1327 aaPredicted RBP35.79■■■■□ 3.32
RAB40C-212ENST00000569575 ARHGEF5Q12774 1597 aa35.78■■■■□ 3.32
RAB40C-212ENST00000569575 MBD5Q9P267 1494 aa35.76■■■■□ 3.32
RAB40C-212ENST00000569575 ZNF518AQ6AHZ1 1483 aa35.75■■■■□ 3.31
RAB40C-212ENST00000569575 SYCP2Q9BX26 1530 aa35.74■■■■□ 3.31
RAB40C-212ENST00000569575 FAM50AQ14320 339 aaKnown RBP35.74■■■■□ 3.31
RAB40C-212ENST00000569575 HNRNPMP52272 730 aaKnown RBP eCLIP35.72■■■■□ 3.31
RAB40C-212ENST00000569575 POGZQ7Z3K3 1410 aa35.72■■■■□ 3.31
RAB40C-212ENST00000569575 ARHGEF12Q9NZN5 1544 aa35.72■■■■□ 3.31
RAB40C-212ENST00000569575 CCDC141Q6ZP82 1450 aa35.7■■■■□ 3.31
RAB40C-212ENST00000569575 KDM6BO15054 1643 aa35.68■■■■□ 3.3
RAB40C-212ENST00000569575 TSPY4P0CV99 314 aa35.67■■■■□ 3.3
RAB40C-212ENST00000569575 TSPY10P0CW01 314 aa35.67■■■■□ 3.3
RAB40C-212ENST00000569575 DNMT1P26358 1616 aaKnown RBP35.66■■■■□ 3.3
RAB40C-212ENST00000569575 RICTORQ6R327 1708 aa35.66■■■■□ 3.3
RAB40C-212ENST00000569575 TRAPPC8Q9Y2L5 1435 aa35.65■■■■□ 3.3
RAB40C-212ENST00000569575 KDM5CP41229 1560 aa35.64■■■■□ 3.3
RAB40C-212ENST00000569575 MAGI2Q86UL8 1455 aa35.63■■■■□ 3.29
RAB40C-212ENST00000569575 COL17A1Q9UMD9 1497 aaPredicted RBP35.63■■■■□ 3.29
RAB40C-212ENST00000569575 SHANK2Q9UPX8 1470 aa35.62■■■■□ 3.29
RAB40C-212ENST00000569575 RTEL1-TNFRSF6BF6WH68 1400 aa35.62■■■■□ 3.29
RAB40C-212ENST00000569575 DAPK1P53355 1430 aa35.62■■■■□ 3.29
RAB40C-212ENST00000569575 ZMYM4Q5VZL5 1548 aa35.61■■■■□ 3.29
RAB40C-212ENST00000569575 ABCC5O15440 1437 aa35.6■■■■□ 3.29
RAB40C-212ENST00000569575 RAPGEF3O95398 923 aa35.6■■■■□ 3.29
RAB40C-212ENST00000569575 AFAP1Q8N556 730 aa35.6■■■■□ 3.29
RAB40C-212ENST00000569575 MLH3Q9UHC1 1453 aa35.6■■■■□ 3.29
RAB40C-212ENST00000569575 MAST1Q9Y2H9 1570 aa35.57■■■■□ 3.28
RAB40C-212ENST00000569575 SPAG9O60271 1321 aaKnown RBP35.57■■■■□ 3.28
RAB40C-212ENST00000569575 FRMPD1Q5SYB0 1578 aa35.56■■■■□ 3.28
RAB40C-212ENST00000569575 CROCC2H7BZ55 1655 aa35.54■■■■□ 3.28
RAB40C-212ENST00000569575 TRIM26Q12899 539 aaPredicted RBP35.53■■■■□ 3.28
RAB40C-212ENST00000569575 HECW2Q9P2P5 1572 aa35.51■■■■□ 3.28
RAB40C-212ENST00000569575 C9orf84Q5VXU9 1444 aa35.5■■■■□ 3.27
RAB40C-212ENST00000569575 ROCK1Q13464 1354 aa35.48■■■■□ 3.27
RAB40C-212ENST00000569575 INO80Q9ULG1 1556 aaPredicted RBP35.47■■■■□ 3.27
RAB40C-212ENST00000569575 ATP7AQ04656 1500 aa35.47■■■■□ 3.27
RAB40C-212ENST00000569575 ADGRL2O95490 1459 aa35.46■■■■□ 3.27
RAB40C-212ENST00000569575 ANKRD30AQ9BXX3 1397 aa35.45■■■■□ 3.27
RAB40C-212ENST00000569575 ZFYVE16Q7Z3T8 1539 aa35.44■■■■□ 3.26
RAB40C-212ENST00000569575 MYT1LQ9UL68 1186 aa35.43■■■■□ 3.26
RAB40C-212ENST00000569575 KIDINS220Q9ULH0 1771 aa35.43■■■■□ 3.26
RAB40C-212ENST00000569575 PLXNC1O60486 1568 aa35.41■■■■□ 3.26
RAB40C-212ENST00000569575 ADGBQ8N7X0 1667 aa35.4■■■■□ 3.26
RAB40C-212ENST00000569575 NCOA1Q15788 1441 aa35.4■■■■□ 3.26
RAB40C-212ENST00000569575 PTPRKQ15262 1439 aa35.39■■■■□ 3.26
RAB40C-212ENST00000569575 ITGAEP38570 1179 aa35.38■■■■□ 3.25
RAB40C-212ENST00000569575 ATP10AO60312 1499 aa35.35■■■■□ 3.25
RAB40C-212ENST00000569575 ARHGEF40Q8TER5 1519 aa35.34■■■■□ 3.25
RAB40C-212ENST00000569575 CHIC2Q9UKJ5 165 aa35.33■■■■□ 3.25
RAB40C-212ENST00000569575 REREQ9P2R6 1566 aa35.32■■■■□ 3.24
RAB40C-212ENST00000569575 YEATS2Q9ULM3 1422 aa35.3■■■■□ 3.24
RAB40C-212ENST00000569575 DIP2CQ9Y2E4 1556 aa35.3■■■■□ 3.24
RAB40C-212ENST00000569575 DUOX2Q9NRD8 1548 aa35.29■■■■□ 3.24
RAB40C-212ENST00000569575 KIF15Q9NS87 1388 aa35.28■■■■□ 3.24
RAB40C-212ENST00000569575 ABCA6Q8N139 1617 aa35.28■■■■□ 3.24
RAB40C-212ENST00000569575 DHX29Q7Z478 1369 aaKnown RBP35.27■■■■□ 3.24
RAB40C-212ENST00000569575 ACIN1Q9UKV3 1341 aaKnown RBP35.27■■■■□ 3.24
RAB40C-212ENST00000569575 A2MP01023 1474 aa35.26■■■■□ 3.23
RAB40C-212ENST00000569575 HFM1A2PYH4 1435 aa35.25■■■■□ 3.23
RAB40C-212ENST00000569575 RRP7BPQ9NSQ0 103 aa35.24■■■■□ 3.23
RAB40C-212ENST00000569575 ERBINQ96RT1 1412 aa35.23■■■■□ 3.23
RAB40C-212ENST00000569575 AGLP35573 1532 aa35.2■■■■□ 3.23
RAB40C-212ENST00000569575 ANKRD50Q9ULJ7 1429 aa35.17■■■■□ 3.22
RAB40C-212ENST00000569575 NAIPQ13075 1403 aa35.16■■■■□ 3.22
RAB40C-212ENST00000569575 EIF2AK4Q9P2K8 1649 aaKnown RBP35.16■■■■□ 3.22
RAB40C-212ENST00000569575 GCC2Q8IWJ2 1684 aa35.15■■■■□ 3.22
RAB40C-212ENST00000569575 BCORL1Q5H9F3 1711 aa35.13■■■■□ 3.21
RAB40C-212ENST00000569575 HRCP23327 699 aa35.12■■■■□ 3.21
RAB40C-212ENST00000569575 SETD5Q9C0A6 1442 aa35.1■■■■□ 3.21
RAB40C-212ENST00000569575 PPP6R1Q9UPN7 881 aa35.08■■■■□ 3.21
RAB40C-212ENST00000569575 KIF3BO15066 747 aa35.03■■■■□ 3.2
RAB40C-212ENST00000569575 ARID4BQ4LE39 1312 aaPredicted RBP34.99■■■■□ 3.19
RAB40C-212ENST00000569575 FAM135AQ9P2D6 1515 aa34.98■■■■□ 3.19
RAB40C-212ENST00000569575 PCGF6Q9BYE7 350 aa34.98■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms