RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.73	□□□□□ -0.37
UBR1-209	ENST00000569243	PLA2G2E	Q9NZK7	142 aa		12.72	□□□□□ -0.37
UBR1-209	ENST00000569243	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.68	□□□□□ -0.38
UBR1-209	ENST00000569243	MS4A4A	Q96JQ5	239 aa		12.67	□□□□□ -0.38
UBR1-209	ENST00000569243	SOX12	O15370	315 aa		12.63	□□□□□ -0.39
UBR1-209	ENST00000569243	PHF8	Q9UPP1	1060 aa		12.62	□□□□□ -0.39
UBR1-209	ENST00000569243	HCST	Q9UBK5	93 aa		12.61	□□□□□ -0.39
UBR1-209	ENST00000569243	AXIN2	Q9Y2T1	843 aa		12.6	□□□□□ -0.39
UBR1-209	ENST00000569243	PBX2	P40425	430 aa		12.58	□□□□□ -0.4
UBR1-209	ENST00000569243	NUDT7	P0C024	238 aa		12.57	□□□□□ -0.4
UBR1-209	ENST00000569243	POTEE	Q6S8J3	1075 aa		12.57	□□□□□ -0.4
UBR1-209	ENST00000569243	TRIM41	Q8WV44	630 aa		12.55	□□□□□ -0.4
UBR1-209	ENST00000569243	LHX6	Q9UPM6	363 aa		12.52	□□□□□ -0.41
UBR1-209	ENST00000569243	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.51	□□□□□ -0.41
UBR1-209	ENST00000569243	ZFP91	Q96JP5	570 aa	Predicted RBP	12.51	□□□□□ -0.41
UBR1-209	ENST00000569243	RIOK3	O14730	519 aa	Known RBP	12.48	□□□□□ -0.41
UBR1-209	ENST00000569243	ADGRD1	Q6QNK2	874 aa		12.47	□□□□□ -0.41
UBR1-209	ENST00000569243	RNF25	Q96BH1	459 aa	Predicted RBP	12.45	□□□□□ -0.42
UBR1-209	ENST00000569243	C2orf72	A6NCS6	295 aa		12.44	□□□□□ -0.42
UBR1-209	ENST00000569243	PCDHGA4	Q9Y5G9	962 aa		12.44	□□□□□ -0.42
UBR1-209	ENST00000569243	NLRP6	P59044	892 aa		12.43	□□□□□ -0.42
UBR1-209	ENST00000569243	VGF	O15240	615 aa	Predicted RBP	12.42	□□□□□ -0.42
UBR1-209	ENST00000569243	ARHGAP33	O14559	1287 aa		12.41	□□□□□ -0.42
UBR1-209	ENST00000569243	KIF3C	O14782	793 aa		12.41	□□□□□ -0.42
UBR1-209	ENST00000569243	FBXO22	Q8NEZ5	403 aa		12.4	□□□□□ -0.42
UBR1-209	ENST00000569243	KCTD12	Q96CX2	325 aa	Known RBP	12.36	□□□□□ -0.43
UBR1-209	ENST00000569243	SLC34A2	O95436	690 aa		12.35	□□□□□ -0.43
UBR1-209	ENST00000569243	DMRTA1	Q5VZB9	504 aa		12.34	□□□□□ -0.43
UBR1-209	ENST00000569243	HR	O43593	1189 aa		12.33	□□□□□ -0.44
UBR1-209	ENST00000569243	TK2	O00142	265 aa		12.32	□□□□□ -0.44
UBR1-209	ENST00000569243	PSEN2	P49810	448 aa		12.32	□□□□□ -0.44
UBR1-209	ENST00000569243	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.31	□□□□□ -0.44
UBR1-209	ENST00000569243	PSD	A5PKW4	1024 aa	Predicted RBP	12.29	□□□□□ -0.44
UBR1-209	ENST00000569243	MFRP	Q9BY79	579 aa		12.29	□□□□□ -0.44
UBR1-209	ENST00000569243	STAC3	Q96MF2	364 aa		12.28	□□□□□ -0.44
UBR1-209	ENST00000569243	IRX2	Q9BZI1	471 aa	Predicted RBP	12.28	□□□□□ -0.44
UBR1-209	ENST00000569243	TMC2	Q8TDI7	906 aa		12.27	□□□□□ -0.45
UBR1-209	ENST00000569243	STK24	Q9Y6E0	443 aa		12.26	□□□□□ -0.45
UBR1-209	ENST00000569243	PTPN5	P54829	565 aa		12.24	□□□□□ -0.45
UBR1-209	ENST00000569243	KDM4F	A0A1W2PPD8	638 aa		12.2	□□□□□ -0.46
UBR1-209	ENST00000569243	RGS20	O76081	388 aa		12.2	□□□□□ -0.46
UBR1-209	ENST00000569243	PPP4R3B	Q5MIZ7	849 aa		12.17	□□□□□ -0.46
UBR1-209	ENST00000569243	TAOK2	Q9UL54	1235 aa		12.16	□□□□□ -0.46
UBR1-209	ENST00000569243	STK25	O00506	426 aa		12.14	□□□□□ -0.47
UBR1-209	ENST00000569243	KCNK17	Q96T54	332 aa		12.14	□□□□□ -0.47
UBR1-209	ENST00000569243	IFFO2	Q5TF58	517 aa		12.13	□□□□□ -0.47
UBR1-209	ENST00000569243	PTCD2	Q8WV60	388 aa	Known RBP	12.13	□□□□□ -0.47
UBR1-209	ENST00000569243		A0A0G2JS52	829 aa		12.11	□□□□□ -0.47
UBR1-209	ENST00000569243	VPS9D1	Q9Y2B5	631 aa		12.11	□□□□□ -0.47
UBR1-209	ENST00000569243	KCNH8	Q96L42	1107 aa		12.1	□□□□□ -0.47
UBR1-209	ENST00000569243	PPP1R37	O75864	691 aa		12.05	□□□□□ -0.48
UBR1-209	ENST00000569243	THSD4	Q6ZMP0	1018 aa		12.05	□□□□□ -0.48
UBR1-209	ENST00000569243	PLPP6	Q8IY26	295 aa		12.04	□□□□□ -0.48
UBR1-209	ENST00000569243	TBC1D12	O60347	775 aa		12.01	□□□□□ -0.49
UBR1-209	ENST00000569243	GOLGA8CP	A6NN73	597 aa		12	□□□□□ -0.49
UBR1-209	ENST00000569243	FOXK1	P85037	733 aa		12	□□□□□ -0.49
UBR1-209	ENST00000569243		Q6ZNB5	142 aa		12	□□□□□ -0.49
UBR1-209	ENST00000569243	WNT2B	Q93097	391 aa		11.99	□□□□□ -0.49
UBR1-209	ENST00000569243	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.96	□□□□□ -0.49
UBR1-209	ENST00000569243	SLC4A5	Q9BY07	1137 aa		11.96	□□□□□ -0.49
UBR1-209	ENST00000569243	DSG2	Q14126	1118 aa		11.95	□□□□□ -0.5
UBR1-209	ENST00000569243	ZNF454	Q8N9F8	522 aa		11.95	□□□□□ -0.5
UBR1-209	ENST00000569243	MRPL50	Q8N5N7	158 aa	Known RBP	11.94	□□□□□ -0.5
UBR1-209	ENST00000569243	GPHN	Q9NQX3	736 aa	Predicted RBP	11.93	□□□□□ -0.5
UBR1-209	ENST00000569243	BCL2L12	Q9HB09	334 aa		11.92	□□□□□ -0.5
UBR1-209	ENST00000569243	ECM2	O94769	699 aa	Predicted RBP	11.89	□□□□□ -0.51
UBR1-209	ENST00000569243	ZBED2	Q9BTP6	218 aa		11.89	□□□□□ -0.51
UBR1-209	ENST00000569243	PTPRE	P23469	700 aa		11.88	□□□□□ -0.51
UBR1-209	ENST00000569243	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.87	□□□□□ -0.51
UBR1-209	ENST00000569243	OXER1	Q8TDS5	423 aa		11.85	□□□□□ -0.51
UBR1-209	ENST00000569243	NBPF3	Q9H094	633 aa		11.83	□□□□□ -0.52
UBR1-209	ENST00000569243	RGL2	O15211	777 aa		11.82	□□□□□ -0.52
UBR1-209	ENST00000569243	FOSB	P53539	338 aa		11.82	□□□□□ -0.52
UBR1-209	ENST00000569243	ITGBL1	O95965	494 aa	Predicted RBP	11.81	□□□□□ -0.52
UBR1-209	ENST00000569243	ANKK1	Q8NFD2	765 aa		11.76	□□□□□ -0.53
UBR1-209	ENST00000569243	LCE2B	O14633	110 aa		11.75	□□□□□ -0.53
UBR1-209	ENST00000569243	ADAM33	Q9BZ11	813 aa		11.75	□□□□□ -0.53
UBR1-209	ENST00000569243	BCAM	P50895	628 aa		11.74	□□□□□ -0.53
UBR1-209	ENST00000569243	TRAF7	Q6Q0C0	670 aa		11.73	□□□□□ -0.53
UBR1-209	ENST00000569243	ZDHHC16	Q969W1	377 aa		11.73	□□□□□ -0.53
UBR1-209	ENST00000569243	JPH4	Q96JJ6	628 aa		11.73	□□□□□ -0.53
UBR1-209	ENST00000569243	LAPTM4A	Q15012	233 aa		11.71	□□□□□ -0.53
UBR1-209	ENST00000569243	KCNC4	Q03721	635 aa		11.7	□□□□□ -0.54
UBR1-209	ENST00000569243	GFRA3	O60609	400 aa		11.69	□□□□□ -0.54
UBR1-209	ENST00000569243	PROX2	Q3B8N5	592 aa		11.68	□□□□□ -0.54
UBR1-209	ENST00000569243	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.68	□□□□□ -0.54
UBR1-209	ENST00000569243	RABGEF1	Q9UJ41	708 aa		11.68	□□□□□ -0.54
UBR1-209	ENST00000569243	SOWAHB	A6NEL2	793 aa		11.66	□□□□□ -0.54
UBR1-209	ENST00000569243	EVI5	O60447	810 aa		11.66	□□□□□ -0.54
UBR1-209	ENST00000569243	PKD2	Q13563	968 aa		11.66	□□□□□ -0.54
UBR1-209	ENST00000569243	PPP1R15B	Q5SWA1	713 aa		11.66	□□□□□ -0.54
UBR1-209	ENST00000569243	WBP1L	Q9NX94	342 aa		11.66	□□□□□ -0.54
UBR1-209	ENST00000569243	PPP1R3G	B7ZBB8	358 aa		11.64	□□□□□ -0.55
UBR1-209	ENST00000569243	NYAP1	Q6ZVC0	841 aa		11.64	□□□□□ -0.55
UBR1-209	ENST00000569243	CRISPLD2	Q9H0B8	497 aa		11.62	□□□□□ -0.55
UBR1-209	ENST00000569243	COL9A1	P20849	921 aa		11.61	□□□□□ -0.55
UBR1-209	ENST00000569243	ZFR	Q96KR1	1074 aa	Known RBP	11.61	□□□□□ -0.55
UBR1-209	ENST00000569243	LAPTM4B	Q86VI4	370 aa		11.6	□□□□□ -0.55
UBR1-209	ENST00000569243	KIAA1468	Q9P260	1216 aa		11.58	□□□□□ -0.56
UBR1-209	ENST00000569243	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.55	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms