RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 RICTORQ6R327 1708 aa7.81□□□□□ -1.16
CLK3-219ENST00000567805 KIF14Q15058 1648 aa7.81□□□□□ -1.16
CLK3-219ENST00000567805 PCF11O94913 1555 aaKnown RBP7.8□□□□□ -1.16
CLK3-219ENST00000567805 FRMPD1Q5SYB0 1578 aa7.8□□□□□ -1.16
CLK3-219ENST00000567805 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.8□□□□□ -1.16
CLK3-219ENST00000567805 CDK11AQ9UQ88 783 aaPredicted RBP7.8□□□□□ -1.16
CLK3-219ENST00000567805 FANCAO15360 1455 aa7.8□□□□□ -1.16
CLK3-219ENST00000567805 CASKIN1Q8WXD9 1431 aa7.79□□□□□ -1.16
CLK3-219ENST00000567805 ATP1B4Q9UN42 357 aaPredicted RBP7.79□□□□□ -1.16
CLK3-219ENST00000567805 CCDC18Q5T9S5 1454 aa7.79□□□□□ -1.16
CLK3-219ENST00000567805 AKNAQ7Z591 1439 aa7.78□□□□□ -1.16
CLK3-219ENST00000567805 FYCO1Q9BQS8 1478 aa7.78□□□□□ -1.16
CLK3-219ENST00000567805 PLCH2O75038 1416 aa7.78□□□□□ -1.16
CLK3-219ENST00000567805 CLIP1P30622 1438 aa7.78□□□□□ -1.16
CLK3-219ENST00000567805 TROQ12816 1431 aaPredicted RBP7.78□□□□□ -1.16
CLK3-219ENST00000567805 DENND4BO75064 1496 aaPredicted RBP7.77□□□□□ -1.17
CLK3-219ENST00000567805 RAPGEF3O95398 923 aa7.77□□□□□ -1.17
CLK3-219ENST00000567805 ZMYM4Q5VZL5 1548 aa7.77□□□□□ -1.17
CLK3-219ENST00000567805 ARHGEF40Q8TER5 1519 aa7.77□□□□□ -1.17
CLK3-219ENST00000567805 CDC42BPBQ9Y5S2 1711 aa7.76□□□□□ -1.17
CLK3-219ENST00000567805 PREX2Q70Z35 1606 aa7.75□□□□□ -1.17
CLK3-219ENST00000567805 BCORL1Q5H9F3 1711 aa7.75□□□□□ -1.17
CLK3-219ENST00000567805 CDC42BPAQ5VT25 1732 aa7.75□□□□□ -1.17
CLK3-219ENST00000567805 ARHGAP5Q13017 1502 aa7.74□□□□□ -1.17
CLK3-219ENST00000567805 ADAMTSL3P82987 1691 aa7.74□□□□□ -1.17
CLK3-219ENST00000567805 MAGI2Q86UL8 1455 aa7.74□□□□□ -1.17
CLK3-219ENST00000567805 POGZQ7Z3K3 1410 aa7.73□□□□□ -1.17
CLK3-219ENST00000567805 ZFYVE16Q7Z3T8 1539 aa7.73□□□□□ -1.17
CLK3-219ENST00000567805 CEP162Q5TB80 1403 aa7.72□□□□□ -1.17
CLK3-219ENST00000567805 SCAPERQ9BY12 1400 aa7.72□□□□□ -1.17
CLK3-219ENST00000567805 EFCAB2Q5VUJ9 269 aa7.72□□□□□ -1.17
CLK3-219ENST00000567805 ZNF518AQ6AHZ1 1483 aa7.72□□□□□ -1.17
CLK3-219ENST00000567805 ITSN2Q9NZM3 1697 aa7.71□□□□□ -1.18
CLK3-219ENST00000567805 SIGLEC1Q9BZZ2 1709 aa7.71□□□□□ -1.18
CLK3-219ENST00000567805 ABCC1P33527 1531 aa7.71□□□□□ -1.18
CLK3-219ENST00000567805 KDM5CP41229 1560 aa7.71□□□□□ -1.18
CLK3-219ENST00000567805 MADDQ8WXG6 1647 aa7.7□□□□□ -1.18
CLK3-219ENST00000567805 HECW2Q9P2P5 1572 aa7.7□□□□□ -1.18
CLK3-219ENST00000567805 YEATS2Q9ULM3 1422 aa7.69□□□□□ -1.18
CLK3-219ENST00000567805 ARID4BQ4LE39 1312 aaPredicted RBP7.69□□□□□ -1.18
CLK3-219ENST00000567805 RIMS1Q86UR5 1692 aaKnown RBP7.69□□□□□ -1.18
CLK3-219ENST00000567805 FER1L4A9Z1Z3 1794 aa7.69□□□□□ -1.18
CLK3-219ENST00000567805 PTPRMP28827 1452 aa7.68□□□□□ -1.18
CLK3-219ENST00000567805 EHBP1L1Q8N3D4 1523 aa7.68□□□□□ -1.18
CLK3-219ENST00000567805 C9orf84Q5VXU9 1444 aa7.68□□□□□ -1.18
CLK3-219ENST00000567805 ATP10AO60312 1499 aa7.68□□□□□ -1.18
CLK3-219ENST00000567805 SAMD9LQ8IVG5 1584 aa7.67□□□□□ -1.18
CLK3-219ENST00000567805 REREQ9P2R6 1566 aa7.67□□□□□ -1.18
CLK3-219ENST00000567805 MTUS2Q5JR59 1369 aa7.67□□□□□ -1.18
CLK3-219ENST00000567805 MLH3Q9UHC1 1453 aa7.67□□□□□ -1.18
CLK3-219ENST00000567805 GPATCH8Q9UKJ3 1502 aaKnown RBP7.67□□□□□ -1.18
CLK3-219ENST00000567805 DIP2CQ9Y2E4 1556 aa7.67□□□□□ -1.18
CLK3-219ENST00000567805 ABCA6Q8N139 1617 aa7.67□□□□□ -1.18
CLK3-219ENST00000567805 KIDINS220Q9ULH0 1771 aa7.66□□□□□ -1.18
CLK3-219ENST00000567805 DSG3P32926 999 aa7.66□□□□□ -1.18
CLK3-219ENST00000567805 ARHGEF12Q9NZN5 1544 aa7.66□□□□□ -1.18
CLK3-219ENST00000567805 SUPT6HQ7KZ85 1726 aaKnown RBP7.66□□□□□ -1.18
CLK3-219ENST00000567805 TIAM1Q13009 1591 aa7.65□□□□□ -1.18
CLK3-219ENST00000567805 PLEKHH2Q8IVE3 1493 aa7.65□□□□□ -1.18
CLK3-219ENST00000567805 AFAP1Q8N556 730 aa7.65□□□□□ -1.18
CLK3-219ENST00000567805 CCNB3Q8WWL7 1395 aa7.65□□□□□ -1.18
CLK3-219ENST00000567805 SYCP2Q9BX26 1530 aa7.65□□□□□ -1.18
CLK3-219ENST00000567805 TRAPPC8Q9Y2L5 1435 aa7.65□□□□□ -1.18
CLK3-219ENST00000567805 VPS8Q8N3P4 1428 aa7.64□□□□□ -1.19
CLK3-219ENST00000567805 LOC105371045A0A1W2PR82 267 aa7.64□□□□□ -1.19
CLK3-219ENST00000567805 SPINK5Q9NQ38 1064 aaPredicted RBP7.64□□□□□ -1.19
CLK3-219ENST00000567805 KIAA1107Q9UPP5 1409 aa7.63□□□□□ -1.19
CLK3-219ENST00000567805 CFDP1Q9UEE9 299 aaPredicted RBP7.63□□□□□ -1.19
CLK3-219ENST00000567805 MYT1LQ9UL68 1186 aa7.63□□□□□ -1.19
CLK3-219ENST00000567805 INO80Q9ULG1 1556 aaPredicted RBP7.63□□□□□ -1.19
CLK3-219ENST00000567805 AGLP35573 1532 aa7.62□□□□□ -1.19
CLK3-219ENST00000567805 NCBP3Q53F19 620 aaKnown RBP7.62□□□□□ -1.19
CLK3-219ENST00000567805 ZNF777Q9ULD5 760 aaPredicted RBP7.62□□□□□ -1.19
CLK3-219ENST00000567805 U3KPZ7 1027 aaPredicted RBP7.62□□□□□ -1.19
CLK3-219ENST00000567805 ATP7AQ04656 1500 aa7.62□□□□□ -1.19
CLK3-219ENST00000567805 MAP3K1Q13233 1512 aa7.62□□□□□ -1.19
CLK3-219ENST00000567805 ADGBQ8N7X0 1667 aa7.61□□□□□ -1.19
CLK3-219ENST00000567805 MLECQ14165 292 aa7.61□□□□□ -1.19
CLK3-219ENST00000567805 NCOA2Q15596 1464 aa7.61□□□□□ -1.19
CLK3-219ENST00000567805 LMTK3Q96Q04 1460 aa7.61□□□□□ -1.19
CLK3-219ENST00000567805 PREX1Q8TCU6 1659 aa7.6□□□□□ -1.19
CLK3-219ENST00000567805 SPAG9O60271 1321 aaKnown RBP7.6□□□□□ -1.19
CLK3-219ENST00000567805 CAPN15O75808 1086 aa7.6□□□□□ -1.19
CLK3-219ENST00000567805 HNRNPMP52272 730 aaKnown RBP eCLIP7.6□□□□□ -1.19
CLK3-219ENST00000567805 LRRC9Q6ZRR7 1453 aa7.6□□□□□ -1.19
CLK3-219ENST00000567805 C3P01024 1663 aa7.6□□□□□ -1.19
CLK3-219ENST00000567805 PLXNC1O60486 1568 aa7.59□□□□□ -1.19
CLK3-219ENST00000567805 SETD1BQ9UPS6 1966 aaKnown RBP7.59□□□□□ -1.19
CLK3-219ENST00000567805 KCNA4P22459 653 aa7.59□□□□□ -1.19
CLK3-219ENST00000567805 MBD5Q9P267 1494 aa7.59□□□□□ -1.19
CLK3-219ENST00000567805 MROH2AA6NES4 1674 aa7.59□□□□□ -1.19
CLK3-219ENST00000567805 CAMSAP2Q08AD1 1489 aa7.58□□□□□ -1.2
CLK3-219ENST00000567805 A2MP01023 1474 aa7.57□□□□□ -1.2
CLK3-219ENST00000567805 CCDC141Q6ZP82 1450 aa7.57□□□□□ -1.2
CLK3-219ENST00000567805 NPM3O75607 178 aaKnown RBP7.57□□□□□ -1.2
CLK3-219ENST00000567805 RTEL1-TNFRSF6BF6WH68 1400 aa7.57□□□□□ -1.2
CLK3-219ENST00000567805 CNTLNQ9NXG0 1405 aa7.57□□□□□ -1.2
CLK3-219ENST00000567805 ARHGEF5Q12774 1597 aa7.57□□□□□ -1.2
CLK3-219ENST00000567805 ZNF644Q9H582 1327 aaPredicted RBP7.56□□□□□ -1.2
CLK3-219ENST00000567805 ESF1Q9H501 851 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms