RNA–Protein interactions for RNA: ENST00000567549.2

LINC01238-205, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

BASIC

Gene LINC01238, Length 1,107 nt, Biotype antisense RNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-205ENST00000567549 ZFYVE16Q7Z3T8 1539 aa30.3■■■□□ 2.44
LINC01238-205ENST00000567549 CCDC18Q5T9S5 1454 aa30.3■■■□□ 2.44
LINC01238-205ENST00000567549 SCAPERQ9BY12 1400 aa30.28■■■□□ 2.44
LINC01238-205ENST00000567549 CASKIN1Q8WXD9 1431 aa30.23■■■□□ 2.43
LINC01238-205ENST00000567549 MADDQ8WXG6 1647 aa30.22■■■□□ 2.43
LINC01238-205ENST00000567549 ARHGAP5Q13017 1502 aa30.21■■■□□ 2.43
LINC01238-205ENST00000567549 ZNF518AQ6AHZ1 1483 aa30.19■■■□□ 2.42
LINC01238-205ENST00000567549 FYCO1Q9BQS8 1478 aa30.17■■■□□ 2.42
LINC01238-205ENST00000567549 PCF11O94913 1555 aaKnown RBP30.16■■■□□ 2.42
LINC01238-205ENST00000567549 YEATS2Q9ULM3 1422 aa30.15■■■□□ 2.42
LINC01238-205ENST00000567549 LRRIQ1Q96JM4 1722 aa30.15■■■□□ 2.42
LINC01238-205ENST00000567549 RIMS1Q86UR5 1692 aaKnown RBP30.14■■■□□ 2.42
LINC01238-205ENST00000567549 ATP10AO60312 1499 aa30.12■■■□□ 2.41
LINC01238-205ENST00000567549 C9orf84Q5VXU9 1444 aa30.12■■■□□ 2.41
LINC01238-205ENST00000567549 MYT1LQ9UL68 1186 aa30.08■■■□□ 2.41
LINC01238-205ENST00000567549 PREX2Q70Z35 1606 aa30.07■■■□□ 2.4
LINC01238-205ENST00000567549 KDM5CP41229 1560 aa30.06■■■□□ 2.4
LINC01238-205ENST00000567549 FER1L4A9Z1Z3 1794 aa30.05■■■□□ 2.4
LINC01238-205ENST00000567549 CDC42BPBQ9Y5S2 1711 aa30.05■■■□□ 2.4
LINC01238-205ENST00000567549 MLECQ14165 292 aa30■■■□□ 2.39
LINC01238-205ENST00000567549 ILDR1Q86SU0 546 aaPredicted RBP30■■■□□ 2.39
LINC01238-205ENST00000567549 AFAP1Q8N556 730 aa29.97■■■□□ 2.39
LINC01238-205ENST00000567549 LMTK3Q96Q04 1460 aa29.97■■■□□ 2.39
LINC01238-205ENST00000567549 MLH3Q9UHC1 1453 aa29.97■■■□□ 2.39
LINC01238-205ENST00000567549 ABCC1P33527 1531 aa29.96■■■□□ 2.39
LINC01238-205ENST00000567549 SIGLEC1Q9BZZ2 1709 aa29.96■■■□□ 2.39
LINC01238-205ENST00000567549 ARHGEF12Q9NZN5 1544 aa29.96■■■□□ 2.39
LINC01238-205ENST00000567549 REREQ9P2R6 1566 aa29.95■■■□□ 2.39
LINC01238-205ENST00000567549 CDC42BPAQ5VT25 1732 aa29.94■■■□□ 2.38
LINC01238-205ENST00000567549 ITSN2Q9NZM3 1697 aa29.94■■■□□ 2.38
LINC01238-205ENST00000567549 PLPPR3Q6T4P5 718 aa29.91■■■□□ 2.38
LINC01238-205ENST00000567549 DIP2CQ9Y2E4 1556 aa29.9■■■□□ 2.38
LINC01238-205ENST00000567549 MTUS2Q5JR59 1369 aa29.89■■■□□ 2.37
LINC01238-205ENST00000567549 ESF1Q9H501 851 aaKnown RBP29.88■■■□□ 2.37
LINC01238-205ENST00000567549 PLEKHH2Q8IVE3 1493 aa29.87■■■□□ 2.37
LINC01238-205ENST00000567549 ZNF777Q9ULD5 760 aaPredicted RBP29.85■■■□□ 2.37
LINC01238-205ENST00000567549 TRAPPC8Q9Y2L5 1435 aa29.85■■■□□ 2.37
LINC01238-205ENST00000567549 AGLP35573 1532 aa29.85■■■□□ 2.37
LINC01238-205ENST00000567549 ABCA6Q8N139 1617 aa29.85■■■□□ 2.37
LINC01238-205ENST00000567549 CCNB3Q8WWL7 1395 aa29.84■■■□□ 2.37
LINC01238-205ENST00000567549 GPATCH8Q9UKJ3 1502 aaKnown RBP29.82■■■□□ 2.36
LINC01238-205ENST00000567549 PREX1Q8TCU6 1659 aa29.82■■■□□ 2.36
LINC01238-205ENST00000567549 CFDP1Q9UEE9 299 aaPredicted RBP29.81■■■□□ 2.36
LINC01238-205ENST00000567549 KIAA1107Q9UPP5 1409 aa29.79■■■□□ 2.36
LINC01238-205ENST00000567549 SETD1BQ9UPS6 1966 aaKnown RBP29.79■■■□□ 2.36
LINC01238-205ENST00000567549 SAMD9LQ8IVG5 1584 aa29.78■■■□□ 2.36
LINC01238-205ENST00000567549 KIDINS220Q9ULH0 1771 aa29.78■■■□□ 2.36
LINC01238-205ENST00000567549 SPAG9O60271 1321 aaKnown RBP29.77■■■□□ 2.36
LINC01238-205ENST00000567549 EHBP1L1Q8N3D4 1523 aa29.77■■■□□ 2.36
LINC01238-205ENST00000567549 CEP162Q5TB80 1403 aa29.77■■■□□ 2.36
LINC01238-205ENST00000567549 SYCP2Q9BX26 1530 aa29.76■■■□□ 2.36
LINC01238-205ENST00000567549 FBXO41Q8TF61 875 aa29.76■■■□□ 2.35
LINC01238-205ENST00000567549 CNTLNQ9NXG0 1405 aa29.76■■■□□ 2.35
LINC01238-205ENST00000567549 HSPA2P54652 639 aa29.75■■■□□ 2.35
LINC01238-205ENST00000567549 UHRF1BP1Q6BDS2 1440 aa29.73■■■□□ 2.35
LINC01238-205ENST00000567549 HNRNPMP52272 730 aaKnown RBP eCLIP29.69■■■□□ 2.34
LINC01238-205ENST00000567549 ATP7AQ04656 1500 aa29.69■■■□□ 2.34
LINC01238-205ENST00000567549 CEBPAP49715 358 aaPredicted RBP29.68■■■□□ 2.34
LINC01238-205ENST00000567549 DMRT2Q9Y5R5 561 aa29.68■■■□□ 2.34
LINC01238-205ENST00000567549 C3P01024 1663 aa29.65■■■□□ 2.34
LINC01238-205ENST00000567549 TIAM1Q13009 1591 aa29.63■■■□□ 2.33
LINC01238-205ENST00000567549 INO80Q9ULG1 1556 aaPredicted RBP29.63■■■□□ 2.33
LINC01238-205ENST00000567549 MROH2AA6NES4 1674 aa29.61■■■□□ 2.33
LINC01238-205ENST00000567549 SUPT6HQ7KZ85 1726 aaKnown RBP29.6■■■□□ 2.33
LINC01238-205ENST00000567549 A2MP01023 1474 aa29.59■■■□□ 2.33
LINC01238-205ENST00000567549 ADGBQ8N7X0 1667 aa29.59■■■□□ 2.33
LINC01238-205ENST00000567549 RSPH4AQ5TD94 716 aa29.56■■■□□ 2.32
LINC01238-205ENST00000567549 PPP6R1Q9UPN7 881 aa29.56■■■□□ 2.32
LINC01238-205ENST00000567549 PLXNC1O60486 1568 aa29.56■■■□□ 2.32
LINC01238-205ENST00000567549 NPATQ14207 1427 aa29.55■■■□□ 2.32
LINC01238-205ENST00000567549 RTEL1-TNFRSF6BF6WH68 1400 aa29.54■■■□□ 2.32
LINC01238-205ENST00000567549 NCOA2Q15596 1464 aa29.5■■■□□ 2.31
LINC01238-205ENST00000567549 VPS8Q8N3P4 1428 aa29.49■■■□□ 2.31
LINC01238-205ENST00000567549 ZMYM3Q14202 1370 aa29.49■■■□□ 2.31
LINC01238-205ENST00000567549 MBD5Q9P267 1494 aa29.48■■■□□ 2.31
LINC01238-205ENST00000567549 CERKQ8TCT0 537 aa29.47■■■□□ 2.31
LINC01238-205ENST00000567549 CCDC141Q6ZP82 1450 aa29.47■■■□□ 2.31
LINC01238-205ENST00000567549 ZNF644Q9H582 1327 aaPredicted RBP29.45■■■□□ 2.31
LINC01238-205ENST00000567549 GGT6Q6P531 493 aa29.45■■■□□ 2.31
LINC01238-205ENST00000567549 STRCQ7RTU9 1775 aa29.44■■■□□ 2.3
LINC01238-205ENST00000567549 CLTCQ00610 1675 aaKnown RBP29.44■■■□□ 2.3
LINC01238-205ENST00000567549 PTPRTO14522 1441 aa29.44■■■□□ 2.3
LINC01238-205ENST00000567549 CAMSAP2Q08AD1 1489 aa29.43■■■□□ 2.3
LINC01238-205ENST00000567549 DHX29Q7Z478 1369 aaKnown RBP29.41■■■□□ 2.3
LINC01238-205ENST00000567549 TSPY4P0CV99 314 aa29.4■■■□□ 2.3
LINC01238-205ENST00000567549 TSPY10P0CW01 314 aa29.4■■■□□ 2.3
LINC01238-205ENST00000567549 MAP3K1Q13233 1512 aa29.4■■■□□ 2.3
LINC01238-205ENST00000567549 FAM135AQ9P2D6 1515 aa29.4■■■□□ 2.3
LINC01238-205ENST00000567549 LRRC9Q6ZRR7 1453 aa29.38■■■□□ 2.29
LINC01238-205ENST00000567549 ARHGEF5Q12774 1597 aa29.37■■■□□ 2.29
LINC01238-205ENST00000567549 NCOA1Q15788 1441 aa29.35■■■□□ 2.29
LINC01238-205ENST00000567549 LOC105371045A0A1W2PR82 267 aa29.33■■■□□ 2.29
LINC01238-205ENST00000567549 ZNF142P52746 1687 aaPredicted RBP29.33■■■□□ 2.29
LINC01238-205ENST00000567549 CAMSAP1Q5T5Y3 1602 aa29.31■■■□□ 2.28
LINC01238-205ENST00000567549 MYO3AQ8NEV4 1616 aa29.31■■■□□ 2.28
LINC01238-205ENST00000567549 PTPRKQ15262 1439 aa29.31■■■□□ 2.28
LINC01238-205ENST00000567549 APLP2Q06481 763 aa29.31■■■□□ 2.28
LINC01238-205ENST00000567549 KIF3BO15066 747 aa29.3■■■□□ 2.28
LINC01238-205ENST00000567549 KDM5DQ9BY66 1539 aa29.28■■■□□ 2.28
LINC01238-205ENST00000567549 PLA2R1Q13018 1463 aa29.28■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms