RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 POGZQ7Z3K3 1410 aa29.83■■■□□ 2.37
CLN3-227ENST00000567495 MTUS2Q5JR59 1369 aa29.81■■■□□ 2.36
CLN3-227ENST00000567495 ZMYM4Q5VZL5 1548 aa29.81■■■□□ 2.36
CLN3-227ENST00000567495 RICTORQ6R327 1708 aa29.79■■■□□ 2.36
CLN3-227ENST00000567495 ARID4BQ4LE39 1312 aaPredicted RBP29.75■■■□□ 2.35
CLN3-227ENST00000567495 ARHGEF40Q8TER5 1519 aa29.75■■■□□ 2.35
CLN3-227ENST00000567495 ZNF518AQ6AHZ1 1483 aa29.74■■■□□ 2.35
CLN3-227ENST00000567495 VPS8Q8N3P4 1428 aa29.71■■■□□ 2.35
CLN3-227ENST00000567495 ZFYVE16Q7Z3T8 1539 aa29.71■■■□□ 2.35
CLN3-227ENST00000567495 PREX2Q70Z35 1606 aa29.71■■■□□ 2.35
CLN3-227ENST00000567495 CCNB3Q8WWL7 1395 aa29.7■■■□□ 2.35
CLN3-227ENST00000567495 AFAP1Q8N556 730 aa29.7■■■□□ 2.35
CLN3-227ENST00000567495 GPATCH8Q9UKJ3 1502 aaKnown RBP29.7■■■□□ 2.34
CLN3-227ENST00000567495 YEATS2Q9ULM3 1422 aa29.69■■■□□ 2.34
CLN3-227ENST00000567495 CFDP1Q9UEE9 299 aaPredicted RBP29.67■■■□□ 2.34
CLN3-227ENST00000567495 CDC42BPBQ9Y5S2 1711 aa29.66■■■□□ 2.34
CLN3-227ENST00000567495 EHBP1L1Q8N3D4 1523 aa29.66■■■□□ 2.34
CLN3-227ENST00000567495 ZNF777Q9ULD5 760 aaPredicted RBP29.64■■■□□ 2.34
CLN3-227ENST00000567495 ATP10AO60312 1499 aa29.63■■■□□ 2.33
CLN3-227ENST00000567495 ABCC1P33527 1531 aa29.62■■■□□ 2.33
CLN3-227ENST00000567495 KDM5CP41229 1560 aa29.62■■■□□ 2.33
CLN3-227ENST00000567495 MYT1LQ9UL68 1186 aa29.61■■■□□ 2.33
CLN3-227ENST00000567495 CDC42BPAQ5VT25 1732 aa29.6■■■□□ 2.33
CLN3-227ENST00000567495 PLEKHH2Q8IVE3 1493 aa29.6■■■□□ 2.33
CLN3-227ENST00000567495 KIAA1107Q9UPP5 1409 aa29.59■■■□□ 2.33
CLN3-227ENST00000567495 TRAPPC8Q9Y2L5 1435 aa29.59■■■□□ 2.33
CLN3-227ENST00000567495 MLH3Q9UHC1 1453 aa29.59■■■□□ 2.33
CLN3-227ENST00000567495 ARHGEF12Q9NZN5 1544 aa29.59■■■□□ 2.33
CLN3-227ENST00000567495 C9orf84Q5VXU9 1444 aa29.58■■■□□ 2.33
CLN3-227ENST00000567495 ADAMTSL3P82987 1691 aa29.56■■■□□ 2.32
CLN3-227ENST00000567495 TIAM1Q13009 1591 aa29.54■■■□□ 2.32
CLN3-227ENST00000567495 BCORL1Q5H9F3 1711 aa29.54■■■□□ 2.32
CLN3-227ENST00000567495 HECW2Q9P2P5 1572 aa29.52■■■□□ 2.32
CLN3-227ENST00000567495 MAP3K1Q13233 1512 aa29.52■■■□□ 2.32
CLN3-227ENST00000567495 HNRNPMP52272 730 aaKnown RBP eCLIP29.52■■■□□ 2.32
CLN3-227ENST00000567495 PTPRMP28827 1452 aa29.51■■■□□ 2.31
CLN3-227ENST00000567495 SAMD9LQ8IVG5 1584 aa29.51■■■□□ 2.31
CLN3-227ENST00000567495 NCOA2Q15596 1464 aa29.49■■■□□ 2.31
CLN3-227ENST00000567495 SPAG9O60271 1321 aaKnown RBP29.48■■■□□ 2.31
CLN3-227ENST00000567495 ITSN2Q9NZM3 1697 aa29.48■■■□□ 2.31
CLN3-227ENST00000567495 LRRC9Q6ZRR7 1453 aa29.48■■■□□ 2.31
CLN3-227ENST00000567495 SYCP2Q9BX26 1530 aa29.47■■■□□ 2.31
CLN3-227ENST00000567495 APLP2Q06481 763 aa29.46■■■□□ 2.31
CLN3-227ENST00000567495 MLECQ14165 292 aa29.46■■■□□ 2.31
CLN3-227ENST00000567495 SUPT6HQ7KZ85 1726 aaKnown RBP29.44■■■□□ 2.3
CLN3-227ENST00000567495 REREQ9P2R6 1566 aa29.43■■■□□ 2.3
CLN3-227ENST00000567495 ZNF644Q9H582 1327 aaPredicted RBP29.43■■■□□ 2.3
CLN3-227ENST00000567495 MADDQ8WXG6 1647 aa29.42■■■□□ 2.3
CLN3-227ENST00000567495 DIP2CQ9Y2E4 1556 aa29.42■■■□□ 2.3
CLN3-227ENST00000567495 RSPH4AQ5TD94 716 aa29.4■■■□□ 2.3
CLN3-227ENST00000567495 KANK4Q5T7N3 995 aaPredicted RBP29.39■■■□□ 2.3
CLN3-227ENST00000567495 SIGLEC1Q9BZZ2 1709 aa29.37■■■□□ 2.29
CLN3-227ENST00000567495 AGLP35573 1532 aa29.37■■■□□ 2.29
CLN3-227ENST00000567495 MBD5Q9P267 1494 aa29.36■■■□□ 2.29
CLN3-227ENST00000567495 ABCA6Q8N139 1617 aa29.36■■■□□ 2.29
CLN3-227ENST00000567495 KIDINS220Q9ULH0 1771 aa29.35■■■□□ 2.29
CLN3-227ENST00000567495 ATP7AQ04656 1500 aa29.31■■■□□ 2.28
CLN3-227ENST00000567495 RTEL1-TNFRSF6BF6WH68 1400 aa29.3■■■□□ 2.28
CLN3-227ENST00000567495 RIMS1Q86UR5 1692 aaKnown RBP29.3■■■□□ 2.28
CLN3-227ENST00000567495 ESF1Q9H501 851 aaKnown RBP29.29■■■□□ 2.28
CLN3-227ENST00000567495 CAMSAP2Q08AD1 1489 aa29.29■■■□□ 2.28
CLN3-227ENST00000567495 MIA2Q96PC5 1412 aa29.27■■■□□ 2.28
CLN3-227ENST00000567495 CCDC141Q6ZP82 1450 aa29.26■■■□□ 2.27
CLN3-227ENST00000567495 INO80Q9ULG1 1556 aaPredicted RBP29.26■■■□□ 2.27
CLN3-227ENST00000567495 MYOM3Q5VTT5 1437 aa29.25■■■□□ 2.27
CLN3-227ENST00000567495 A2MP01023 1474 aa29.24■■■□□ 2.27
CLN3-227ENST00000567495 TSPY4P0CV99 314 aa29.24■■■□□ 2.27
CLN3-227ENST00000567495 TSPY10P0CW01 314 aa29.24■■■□□ 2.27
CLN3-227ENST00000567495 PLPPR3Q6T4P5 718 aa29.23■■■□□ 2.27
CLN3-227ENST00000567495 FER1L4A9Z1Z3 1794 aa29.23■■■□□ 2.27
CLN3-227ENST00000567495 CNTLNQ9NXG0 1405 aa29.2■■■□□ 2.27
CLN3-227ENST00000567495 PPP6R1Q9UPN7 881 aa29.18■■■□□ 2.26
CLN3-227ENST00000567495 ARHGEF5Q12774 1597 aa29.18■■■□□ 2.26
CLN3-227ENST00000567495 PLXNC1O60486 1568 aa29.17■■■□□ 2.26
CLN3-227ENST00000567495 DHX29Q7Z478 1369 aaKnown RBP29.16■■■□□ 2.26
CLN3-227ENST00000567495 CEBPAP49715 358 aaPredicted RBP29.15■■■□□ 2.26
CLN3-227ENST00000567495 LMTK3Q96Q04 1460 aa29.14■■■□□ 2.26
CLN3-227ENST00000567495 ADGBQ8N7X0 1667 aa29.12■■■□□ 2.25
CLN3-227ENST00000567495 GGT6Q6P531 493 aa29.1■■■□□ 2.25
CLN3-227ENST00000567495 ZMYM3Q14202 1370 aa29.05■■■□□ 2.24
CLN3-227ENST00000567495 FGD6Q6ZV73 1430 aa29.04■■■□□ 2.24
CLN3-227ENST00000567495 KIF3BO15066 747 aa29.04■■■□□ 2.24
CLN3-227ENST00000567495 MAST1Q9Y2H9 1570 aa29.01■■■□□ 2.24
CLN3-227ENST00000567495 HSPA2P54652 639 aa29.01■■■□□ 2.23
CLN3-227ENST00000567495 UHRF1BP1Q6BDS2 1440 aa29.01■■■□□ 2.23
CLN3-227ENST00000567495 NPATQ14207 1427 aa29■■■□□ 2.23
CLN3-227ENST00000567495 SETD1BQ9UPS6 1966 aaKnown RBP28.99■■■□□ 2.23
CLN3-227ENST00000567495 TCOF1Q13428 1488 aaKnown RBP28.97■■■□□ 2.23
CLN3-227ENST00000567495 PTPN23Q9H3S7 1636 aa28.97■■■□□ 2.23
CLN3-227ENST00000567495 ABCC5O15440 1437 aa28.96■■■□□ 2.23
CLN3-227ENST00000567495 MROH2AA6NES4 1674 aa28.96■■■□□ 2.23
CLN3-227ENST00000567495 C3P01024 1663 aa28.96■■■□□ 2.23
CLN3-227ENST00000567495 SHANK2Q9UPX8 1470 aa28.95■■■□□ 2.22
CLN3-227ENST00000567495 FAM135AQ9P2D6 1515 aa28.94■■■□□ 2.22
CLN3-227ENST00000567495 PREX1Q8TCU6 1659 aa28.93■■■□□ 2.22
CLN3-227ENST00000567495 DAPK1P53355 1430 aa28.91■■■□□ 2.22
CLN3-227ENST00000567495 WASHC2CQ9Y4E1 1318 aa28.91■■■□□ 2.22
CLN3-227ENST00000567495 KIF15Q9NS87 1388 aa28.88■■■□□ 2.21
CLN3-227ENST00000567495 PTPRKQ15262 1439 aa28.87■■■□□ 2.21
CLN3-227ENST00000567495 DUOX2Q9NRD8 1548 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms