RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 AKNAQ7Z591 1439 aa30.75■■■□□ 2.51
CLN3-225ENST00000566824 CFAP74Q9C0B2 1584 aa30.75■■■□□ 2.51
CLN3-225ENST00000566824 NCOA2Q15596 1464 aa30.74■■■□□ 2.51
CLN3-225ENST00000566824 APLP2Q06481 763 aa30.72■■■□□ 2.51
CLN3-225ENST00000566824 EFCAB2Q5VUJ9 269 aa30.71■■■□□ 2.51
CLN3-225ENST00000566824 PHLDB1Q86UU1 1377 aa30.7■■■□□ 2.51
CLN3-225ENST00000566824 CCNB3Q8WWL7 1395 aa30.7■■■□□ 2.51
CLN3-225ENST00000566824 FRMPD1Q5SYB0 1578 aa30.68■■■□□ 2.5
CLN3-225ENST00000566824 RAPGEF3O95398 923 aa30.68■■■□□ 2.5
CLN3-225ENST00000566824 ADGRL1O94910 1474 aa30.65■■■□□ 2.5
CLN3-225ENST00000566824 RICTORQ6R327 1708 aa30.65■■■□□ 2.5
CLN3-225ENST00000566824 SAMD9LQ8IVG5 1584 aa30.63■■■□□ 2.49
CLN3-225ENST00000566824 SCAPERQ9BY12 1400 aa30.62■■■□□ 2.49
CLN3-225ENST00000566824 ITSN2Q9NZM3 1697 aa30.62■■■□□ 2.49
CLN3-225ENST00000566824 DENND4BO75064 1496 aaPredicted RBP30.61■■■□□ 2.49
CLN3-225ENST00000566824 ARHGEF12Q9NZN5 1544 aa30.6■■■□□ 2.49
CLN3-225ENST00000566824 ZNF777Q9ULD5 760 aaPredicted RBP30.6■■■□□ 2.49
CLN3-225ENST00000566824 CFDP1Q9UEE9 299 aaPredicted RBP30.59■■■□□ 2.49
CLN3-225ENST00000566824 ABCC1P33527 1531 aa30.58■■■□□ 2.49
CLN3-225ENST00000566824 ZNF644Q9H582 1327 aaPredicted RBP30.57■■■□□ 2.48
CLN3-225ENST00000566824 PPARGC1BQ86YN6 1023 aaKnown RBP30.55■■■□□ 2.48
CLN3-225ENST00000566824 POGZQ7Z3K3 1410 aa30.55■■■□□ 2.48
CLN3-225ENST00000566824 SYCP2Q9BX26 1530 aa30.52■■■□□ 2.48
CLN3-225ENST00000566824 TRAPPC8Q9Y2L5 1435 aa30.51■■■□□ 2.48
CLN3-225ENST00000566824 MYOM3Q5VTT5 1437 aa30.49■■■□□ 2.47
CLN3-225ENST00000566824 HNRNPMP52272 730 aaKnown RBP eCLIP30.48■■■□□ 2.47
CLN3-225ENST00000566824 AFAP1Q8N556 730 aa30.48■■■□□ 2.47
CLN3-225ENST00000566824 ZMYM4Q5VZL5 1548 aa30.47■■■□□ 2.47
CLN3-225ENST00000566824 CAMSAP2Q08AD1 1489 aa30.45■■■□□ 2.47
CLN3-225ENST00000566824 ZNF518AQ6AHZ1 1483 aa30.44■■■□□ 2.46
CLN3-225ENST00000566824 KDM5CP41229 1560 aa30.43■■■□□ 2.46
CLN3-225ENST00000566824 KIAA1107Q9UPP5 1409 aa30.42■■■□□ 2.46
CLN3-225ENST00000566824 PLEKHH2Q8IVE3 1493 aa30.41■■■□□ 2.46
CLN3-225ENST00000566824 YEATS2Q9ULM3 1422 aa30.41■■■□□ 2.46
CLN3-225ENST00000566824 MBD5Q9P267 1494 aa30.4■■■□□ 2.46
CLN3-225ENST00000566824 MIA2Q96PC5 1412 aa30.38■■■□□ 2.45
CLN3-225ENST00000566824 ARHGEF40Q8TER5 1519 aa30.37■■■□□ 2.45
CLN3-225ENST00000566824 ZFYVE16Q7Z3T8 1539 aa30.36■■■□□ 2.45
CLN3-225ENST00000566824 FGD6Q6ZV73 1430 aa30.35■■■□□ 2.45
CLN3-225ENST00000566824 HECW2Q9P2P5 1572 aa30.35■■■□□ 2.45
CLN3-225ENST00000566824 PTPN23Q9H3S7 1636 aa30.34■■■□□ 2.45
CLN3-225ENST00000566824 KIDINS220Q9ULH0 1771 aa30.33■■■□□ 2.45
CLN3-225ENST00000566824 SIGLEC1Q9BZZ2 1709 aa30.33■■■□□ 2.45
CLN3-225ENST00000566824 MAGI2Q86UL8 1455 aa30.33■■■□□ 2.45
CLN3-225ENST00000566824 MLH3Q9UHC1 1453 aa30.31■■■□□ 2.44
CLN3-225ENST00000566824 ABCA6Q8N139 1617 aa30.3■■■□□ 2.44
CLN3-225ENST00000566824 ARHGEF5Q12774 1597 aa30.28■■■□□ 2.44
CLN3-225ENST00000566824 DIP2CQ9Y2E4 1556 aa30.28■■■□□ 2.44
CLN3-225ENST00000566824 TCOF1Q13428 1488 aaKnown RBP30.28■■■□□ 2.44
CLN3-225ENST00000566824 INO80Q9ULG1 1556 aaPredicted RBP30.27■■■□□ 2.44
CLN3-225ENST00000566824 CCDC141Q6ZP82 1450 aa30.26■■■□□ 2.43
CLN3-225ENST00000566824 SPAG9O60271 1321 aaKnown RBP30.26■■■□□ 2.43
CLN3-225ENST00000566824 MYT1LQ9UL68 1186 aa30.25■■■□□ 2.43
CLN3-225ENST00000566824 ATP7AQ04656 1500 aa30.24■■■□□ 2.43
CLN3-225ENST00000566824 ATP10AO60312 1499 aa30.22■■■□□ 2.43
CLN3-225ENST00000566824 ABCC5O15440 1437 aa30.16■■■□□ 2.42
CLN3-225ENST00000566824 C9orf84Q5VXU9 1444 aa30.16■■■□□ 2.42
CLN3-225ENST00000566824 KDM4FA0A1W2PPD8 638 aa30.16■■■□□ 2.42
CLN3-225ENST00000566824 CROCC2H7BZ55 1655 aa30.16■■■□□ 2.42
CLN3-225ENST00000566824 DNMT1P26358 1616 aaKnown RBP30.16■■■□□ 2.42
CLN3-225ENST00000566824 FAM50AQ14320 339 aaKnown RBP30.15■■■□□ 2.42
CLN3-225ENST00000566824 RSPH4AQ5TD94 716 aa30.15■■■□□ 2.42
CLN3-225ENST00000566824 ADGBQ8N7X0 1667 aa30.13■■■□□ 2.41
CLN3-225ENST00000566824 RTEL1-TNFRSF6BF6WH68 1400 aa30.13■■■□□ 2.41
CLN3-225ENST00000566824 MAST1Q9Y2H9 1570 aa30.12■■■□□ 2.41
CLN3-225ENST00000566824 ARID4BQ4LE39 1312 aaPredicted RBP30.12■■■□□ 2.41
CLN3-225ENST00000566824 DAPK1P53355 1430 aa30.12■■■□□ 2.41
CLN3-225ENST00000566824 REREQ9P2R6 1566 aa30.11■■■□□ 2.41
CLN3-225ENST00000566824 BCORL1Q5H9F3 1711 aa30.1■■■□□ 2.41
CLN3-225ENST00000566824 TSPY4P0CV99 314 aa30.09■■■□□ 2.41
CLN3-225ENST00000566824 TSPY10P0CW01 314 aa30.09■■■□□ 2.41
CLN3-225ENST00000566824 PLXNC1O60486 1568 aa30.05■■■□□ 2.4
CLN3-225ENST00000566824 A2MP01023 1474 aa30.05■■■□□ 2.4
CLN3-225ENST00000566824 ADAMTSL3P82987 1691 aa30.05■■■□□ 2.4
CLN3-225ENST00000566824 SHANK2Q9UPX8 1470 aa30.04■■■□□ 2.4
CLN3-225ENST00000566824 RRBP1Q9P2E9 1410 aaKnown RBP30.03■■■□□ 2.4
CLN3-225ENST00000566824 MLECQ14165 292 aa30.02■■■□□ 2.4
CLN3-225ENST00000566824 PTPRKQ15262 1439 aa30.02■■■□□ 2.4
CLN3-225ENST00000566824 CHIC2Q9UKJ5 165 aa30.01■■■□□ 2.4
CLN3-225ENST00000566824 AGLP35573 1532 aa30.01■■■□□ 2.39
CLN3-225ENST00000566824 MADDQ8WXG6 1647 aa29.98■■■□□ 2.39
CLN3-225ENST00000566824 DHX29Q7Z478 1369 aaKnown RBP29.97■■■□□ 2.39
CLN3-225ENST00000566824 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.95■■■□□ 2.39
CLN3-225ENST00000566824 ITGAEP38570 1179 aa29.94■■■□□ 2.38
CLN3-225ENST00000566824 RRP7BPQ9NSQ0 103 aa29.93■■■□□ 2.38
CLN3-225ENST00000566824 RIMS1Q86UR5 1692 aaKnown RBP29.91■■■□□ 2.38
CLN3-225ENST00000566824 FER1L4A9Z1Z3 1794 aa29.91■■■□□ 2.38
CLN3-225ENST00000566824 ADGRL2O95490 1459 aa29.9■■■□□ 2.38
CLN3-225ENST00000566824 KIF15Q9NS87 1388 aa29.9■■■□□ 2.38
CLN3-225ENST00000566824 NCOA1Q15788 1441 aa29.89■■■□□ 2.38
CLN3-225ENST00000566824 DUOX2Q9NRD8 1548 aa29.87■■■□□ 2.37
CLN3-225ENST00000566824 ANKRD30AQ9BXX3 1397 aa29.86■■■□□ 2.37
CLN3-225ENST00000566824 KIF3BO15066 747 aa29.84■■■□□ 2.37
CLN3-225ENST00000566824 GGT6Q6P531 493 aa29.82■■■□□ 2.36
CLN3-225ENST00000566824 PTPRMP28827 1452 aa29.82■■■□□ 2.36
CLN3-225ENST00000566824 EIF2AK4Q9P2K8 1649 aaKnown RBP29.8■■■□□ 2.36
CLN3-225ENST00000566824 RNF17Q9BXT8 1623 aaKnown RBP29.77■■■□□ 2.36
CLN3-225ENST00000566824 ROCK1Q13464 1354 aa29.77■■■□□ 2.36
CLN3-225ENST00000566824 ERBINQ96RT1 1412 aa29.76■■■□□ 2.36
CLN3-225ENST00000566824 AEBP2Q6ZN18 517 aaPredicted RBP29.76■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms