RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 ARHGAP5Q13017 1502 aa29.54■■■□□ 2.32
CLN3-221ENST00000566057 ZMYM4Q5VZL5 1548 aa29.51■■■□□ 2.32
CLN3-221ENST00000566057 CDC42BPAQ5VT25 1732 aa29.51■■■□□ 2.31
CLN3-221ENST00000566057 PREX2Q70Z35 1606 aa29.5■■■□□ 2.31
CLN3-221ENST00000566057 ARHGEF40Q8TER5 1519 aa29.5■■■□□ 2.31
CLN3-221ENST00000566057 POGZQ7Z3K3 1410 aa29.49■■■□□ 2.31
CLN3-221ENST00000566057 YEATS2Q9ULM3 1422 aa29.45■■■□□ 2.3
CLN3-221ENST00000566057 ZFYVE16Q7Z3T8 1539 aa29.43■■■□□ 2.3
CLN3-221ENST00000566057 MAGI2Q86UL8 1455 aa29.42■■■□□ 2.3
CLN3-221ENST00000566057 ADAMTSL3P82987 1691 aa29.41■■■□□ 2.3
CLN3-221ENST00000566057 BCORL1Q5H9F3 1711 aa29.4■■■□□ 2.3
CLN3-221ENST00000566057 SIGLEC1Q9BZZ2 1709 aa29.4■■■□□ 2.3
CLN3-221ENST00000566057 ARID4BQ4LE39 1312 aaPredicted RBP29.4■■■□□ 2.3
CLN3-221ENST00000566057 AFAP1Q8N556 730 aa29.39■■■□□ 2.3
CLN3-221ENST00000566057 MTUS2Q5JR59 1369 aa29.39■■■□□ 2.29
CLN3-221ENST00000566057 GPATCH8Q9UKJ3 1502 aaKnown RBP29.37■■■□□ 2.29
CLN3-221ENST00000566057 ZNF518AQ6AHZ1 1483 aa29.36■■■□□ 2.29
CLN3-221ENST00000566057 ARHGEF12Q9NZN5 1544 aa29.36■■■□□ 2.29
CLN3-221ENST00000566057 ABCC1P33527 1531 aa29.35■■■□□ 2.29
CLN3-221ENST00000566057 ITSN2Q9NZM3 1697 aa29.35■■■□□ 2.29
CLN3-221ENST00000566057 KDM5CP41229 1560 aa29.35■■■□□ 2.29
CLN3-221ENST00000566057 SAMD9LQ8IVG5 1584 aa29.31■■■□□ 2.28
CLN3-221ENST00000566057 TRAPPC8Q9Y2L5 1435 aa29.31■■■□□ 2.28
CLN3-221ENST00000566057 EHBP1L1Q8N3D4 1523 aa29.3■■■□□ 2.28
CLN3-221ENST00000566057 VPS8Q8N3P4 1428 aa29.3■■■□□ 2.28
CLN3-221ENST00000566057 ZNF777Q9ULD5 760 aaPredicted RBP29.3■■■□□ 2.28
CLN3-221ENST00000566057 MADDQ8WXG6 1647 aa29.3■■■□□ 2.28
CLN3-221ENST00000566057 ATP10AO60312 1499 aa29.29■■■□□ 2.28
CLN3-221ENST00000566057 CCNB3Q8WWL7 1395 aa29.28■■■□□ 2.28
CLN3-221ENST00000566057 HECW2Q9P2P5 1572 aa29.28■■■□□ 2.28
CLN3-221ENST00000566057 PTPRMP28827 1452 aa29.26■■■□□ 2.27
CLN3-221ENST00000566057 TIAM1Q13009 1591 aa29.26■■■□□ 2.27
CLN3-221ENST00000566057 CFDP1Q9UEE9 299 aaPredicted RBP29.25■■■□□ 2.27
CLN3-221ENST00000566057 MYT1LQ9UL68 1186 aa29.24■■■□□ 2.27
CLN3-221ENST00000566057 MLH3Q9UHC1 1453 aa29.23■■■□□ 2.27
CLN3-221ENST00000566057 C9orf84Q5VXU9 1444 aa29.23■■■□□ 2.27
CLN3-221ENST00000566057 RIMS1Q86UR5 1692 aaKnown RBP29.22■■■□□ 2.27
CLN3-221ENST00000566057 SYCP2Q9BX26 1530 aa29.22■■■□□ 2.27
CLN3-221ENST00000566057 DIP2CQ9Y2E4 1556 aa29.22■■■□□ 2.27
CLN3-221ENST00000566057 ABCA6Q8N139 1617 aa29.21■■■□□ 2.27
CLN3-221ENST00000566057 HNRNPMP52272 730 aaKnown RBP eCLIP29.21■■■□□ 2.27
CLN3-221ENST00000566057 KIDINS220Q9ULH0 1771 aa29.21■■■□□ 2.27
CLN3-221ENST00000566057 MLECQ14165 292 aa29.2■■■□□ 2.26
CLN3-221ENST00000566057 SUPT6HQ7KZ85 1726 aaKnown RBP29.2■■■□□ 2.26
CLN3-221ENST00000566057 NCOA2Q15596 1464 aa29.17■■■□□ 2.26
CLN3-221ENST00000566057 KIAA1107Q9UPP5 1409 aa29.16■■■□□ 2.26
CLN3-221ENST00000566057 ZNF644Q9H582 1327 aaPredicted RBP29.16■■■□□ 2.26
CLN3-221ENST00000566057 FER1L4A9Z1Z3 1794 aa29.15■■■□□ 2.26
CLN3-221ENST00000566057 PLEKHH2Q8IVE3 1493 aa29.14■■■□□ 2.26
CLN3-221ENST00000566057 LRRC9Q6ZRR7 1453 aa29.13■■■□□ 2.25
CLN3-221ENST00000566057 REREQ9P2R6 1566 aa29.13■■■□□ 2.25
CLN3-221ENST00000566057 MAP3K1Q13233 1512 aa29.1■■■□□ 2.25
CLN3-221ENST00000566057 KANK4Q5T7N3 995 aaPredicted RBP29.09■■■□□ 2.25
CLN3-221ENST00000566057 SPAG9O60271 1321 aaKnown RBP29.09■■■□□ 2.25
CLN3-221ENST00000566057 MBD5Q9P267 1494 aa29.05■■■□□ 2.24
CLN3-221ENST00000566057 ATP7AQ04656 1500 aa29.04■■■□□ 2.24
CLN3-221ENST00000566057 PLPPR3Q6T4P5 718 aa29.04■■■□□ 2.24
CLN3-221ENST00000566057 INO80Q9ULG1 1556 aaPredicted RBP29.04■■■□□ 2.24
CLN3-221ENST00000566057 AGLP35573 1532 aa29.03■■■□□ 2.24
CLN3-221ENST00000566057 CAMSAP2Q08AD1 1489 aa28.99■■■□□ 2.23
CLN3-221ENST00000566057 CEBPAP49715 358 aaPredicted RBP28.93■■■□□ 2.22
CLN3-221ENST00000566057 ADGBQ8N7X0 1667 aa28.93■■■□□ 2.22
CLN3-221ENST00000566057 LMTK3Q96Q04 1460 aa28.92■■■□□ 2.22
CLN3-221ENST00000566057 PLXNC1O60486 1568 aa28.92■■■□□ 2.22
CLN3-221ENST00000566057 A2MP01023 1474 aa28.91■■■□□ 2.22
CLN3-221ENST00000566057 APLP2Q06481 763 aa28.91■■■□□ 2.22
CLN3-221ENST00000566057 CCDC141Q6ZP82 1450 aa28.9■■■□□ 2.22
CLN3-221ENST00000566057 RTEL1-TNFRSF6BF6WH68 1400 aa28.89■■■□□ 2.22
CLN3-221ENST00000566057 ARHGEF5Q12774 1597 aa28.88■■■□□ 2.21
CLN3-221ENST00000566057 MYOM3Q5VTT5 1437 aa28.87■■■□□ 2.21
CLN3-221ENST00000566057 C3P01024 1663 aa28.87■■■□□ 2.21
CLN3-221ENST00000566057 RSPH4AQ5TD94 716 aa28.87■■■□□ 2.21
CLN3-221ENST00000566057 SETD1BQ9UPS6 1966 aaKnown RBP28.83■■■□□ 2.21
CLN3-221ENST00000566057 ESF1Q9H501 851 aaKnown RBP28.83■■■□□ 2.21
CLN3-221ENST00000566057 MIA2Q96PC5 1412 aa28.83■■■□□ 2.21
CLN3-221ENST00000566057 PREX1Q8TCU6 1659 aa28.8■■■□□ 2.2
CLN3-221ENST00000566057 HSPA2P54652 639 aa28.8■■■□□ 2.2
CLN3-221ENST00000566057 DHX29Q7Z478 1369 aaKnown RBP28.78■■■□□ 2.2
CLN3-221ENST00000566057 CNTLNQ9NXG0 1405 aa28.77■■■□□ 2.2
CLN3-221ENST00000566057 CLTCQ00610 1675 aaKnown RBP28.77■■■□□ 2.2
CLN3-221ENST00000566057 TSPY4P0CV99 314 aa28.77■■■□□ 2.2
CLN3-221ENST00000566057 TSPY10P0CW01 314 aa28.77■■■□□ 2.2
CLN3-221ENST00000566057 GGT6Q6P531 493 aa28.77■■■□□ 2.2
CLN3-221ENST00000566057 MROH2AA6NES4 1674 aa28.77■■■□□ 2.2
CLN3-221ENST00000566057 PTPN23Q9H3S7 1636 aa28.73■■■□□ 2.19
CLN3-221ENST00000566057 MAST1Q9Y2H9 1570 aa28.72■■■□□ 2.19
CLN3-221ENST00000566057 ZMYM3Q14202 1370 aa28.71■■■□□ 2.19
CLN3-221ENST00000566057 KIF3BO15066 747 aa28.68■■■□□ 2.18
CLN3-221ENST00000566057 FGD6Q6ZV73 1430 aa28.68■■■□□ 2.18
CLN3-221ENST00000566057 PPP6R1Q9UPN7 881 aa28.66■■■□□ 2.18
CLN3-221ENST00000566057 UHRF1BP1Q6BDS2 1440 aa28.66■■■□□ 2.18
CLN3-221ENST00000566057 CROCC2H7BZ55 1655 aa28.64■■■□□ 2.18
CLN3-221ENST00000566057 ABCC5O15440 1437 aa28.63■■■□□ 2.17
CLN3-221ENST00000566057 TCOF1Q13428 1488 aaKnown RBP28.63■■■□□ 2.17
CLN3-221ENST00000566057 NPATQ14207 1427 aa28.6■■■□□ 2.17
CLN3-221ENST00000566057 DNMT1P26358 1616 aaKnown RBP28.59■■■□□ 2.17
CLN3-221ENST00000566057 STRCQ7RTU9 1775 aa28.58■■■□□ 2.17
CLN3-221ENST00000566057 DAPK1P53355 1430 aa28.57■■■□□ 2.16
CLN3-221ENST00000566057 PTPRKQ15262 1439 aa28.57■■■□□ 2.16
CLN3-221ENST00000566057 SHANK2Q9UPX8 1470 aa28.56■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 149.2 ms