RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ZMYM4Q5VZL5 1548 aa15.84■□□□□ 0.13
CLN3-220ENST00000566040 SUPT6HQ7KZ85 1726 aaKnown RBP15.84■□□□□ 0.13
CLN3-220ENST00000566040 GPATCH8Q9UKJ3 1502 aaKnown RBP15.84■□□□□ 0.13
CLN3-220ENST00000566040 AKNAQ7Z591 1439 aa15.83■□□□□ 0.12
CLN3-220ENST00000566040 LRRC9Q6ZRR7 1453 aa15.83■□□□□ 0.12
CLN3-220ENST00000566040 ARHGEF12Q9NZN5 1544 aa15.83■□□□□ 0.12
CLN3-220ENST00000566040 KDM5CP41229 1560 aa15.81■□□□□ 0.12
CLN3-220ENST00000566040 ARHGAP5Q13017 1502 aa15.81■□□□□ 0.12
CLN3-220ENST00000566040 ARHGEF40Q8TER5 1519 aa15.8■□□□□ 0.12
CLN3-220ENST00000566040 PHLDB1Q86UU1 1377 aa15.79■□□□□ 0.12
CLN3-220ENST00000566040 CDK11AQ9UQ88 783 aaPredicted RBP15.79■□□□□ 0.12
CLN3-220ENST00000566040 ADGRL1O94910 1474 aa15.78■□□□□ 0.12
CLN3-220ENST00000566040 NCOA2Q15596 1464 aa15.78■□□□□ 0.12
CLN3-220ENST00000566040 POGZQ7Z3K3 1410 aa15.78■□□□□ 0.12
CLN3-220ENST00000566040 MTUS2Q5JR59 1369 aa15.76■□□□□ 0.11
CLN3-220ENST00000566040 KANK4Q5T7N3 995 aaPredicted RBP15.76■□□□□ 0.11
CLN3-220ENST00000566040 DENND4BO75064 1496 aaPredicted RBP15.76■□□□□ 0.11
CLN3-220ENST00000566040 SYCP2Q9BX26 1530 aa15.75■□□□□ 0.11
CLN3-220ENST00000566040 KIDINS220Q9ULH0 1771 aa15.75■□□□□ 0.11
CLN3-220ENST00000566040 RAPGEF3O95398 923 aa15.74■□□□□ 0.11
CLN3-220ENST00000566040 ABCA6Q8N139 1617 aa15.74■□□□□ 0.11
CLN3-220ENST00000566040 SCAPERQ9BY12 1400 aa15.74■□□□□ 0.11
CLN3-220ENST00000566040 HECW2Q9P2P5 1572 aa15.73■□□□□ 0.11
CLN3-220ENST00000566040 INO80Q9ULG1 1556 aaPredicted RBP15.72■□□□□ 0.11
CLN3-220ENST00000566040 DIP2CQ9Y2E4 1556 aa15.72■□□□□ 0.11
CLN3-220ENST00000566040 YEATS2Q9ULM3 1422 aa15.72■□□□□ 0.11
CLN3-220ENST00000566040 TRAPPC8Q9Y2L5 1435 aa15.72■□□□□ 0.11
CLN3-220ENST00000566040 ZFYVE16Q7Z3T8 1539 aa15.7■□□□□ 0.1
CLN3-220ENST00000566040 ZNF518AQ6AHZ1 1483 aa15.69■□□□□ 0.1
CLN3-220ENST00000566040 MBD5Q9P267 1494 aa15.69■□□□□ 0.1
CLN3-220ENST00000566040 BCORL1Q5H9F3 1711 aa15.68■□□□□ 0.1
CLN3-220ENST00000566040 ADAMTSL3P82987 1691 aa15.68■□□□□ 0.1
CLN3-220ENST00000566040 CAMSAP2Q08AD1 1489 aa15.68■□□□□ 0.1
CLN3-220ENST00000566040 CCNB3Q8WWL7 1395 aa15.68■□□□□ 0.1
CLN3-220ENST00000566040 EFCAB2Q5VUJ9 269 aa15.67■□□□□ 0.1
CLN3-220ENST00000566040 ADGBQ8N7X0 1667 aa15.67■□□□□ 0.1
CLN3-220ENST00000566040 MAGI2Q86UL8 1455 aa15.66■□□□□ 0.1
CLN3-220ENST00000566040 REREQ9P2R6 1566 aa15.66■□□□□ 0.1
CLN3-220ENST00000566040 ZNF644Q9H582 1327 aaPredicted RBP15.66■□□□□ 0.1
CLN3-220ENST00000566040 CROCC2H7BZ55 1655 aa15.65■□□□□ 0.1
CLN3-220ENST00000566040 KIAA1107Q9UPP5 1409 aa15.65■□□□□ 0.1
CLN3-220ENST00000566040 ARHGEF5Q12774 1597 aa15.65■□□□□ 0.1
CLN3-220ENST00000566040 MLH3Q9UHC1 1453 aa15.65■□□□□ 0.1
CLN3-220ENST00000566040 MYOM3Q5VTT5 1437 aa15.64■□□□□ 0.09
CLN3-220ENST00000566040 KDM4FA0A1W2PPD8 638 aa15.63■□□□□ 0.09
CLN3-220ENST00000566040 PLXNC1O60486 1568 aa15.62■□□□□ 0.09
CLN3-220ENST00000566040 PTPN23Q9H3S7 1636 aa15.62■□□□□ 0.09
CLN3-220ENST00000566040 ATP7AQ04656 1500 aa15.62■□□□□ 0.09
CLN3-220ENST00000566040 PLEKHH2Q8IVE3 1493 aa15.61■□□□□ 0.09
CLN3-220ENST00000566040 AFAP1Q8N556 730 aa15.61■□□□□ 0.09
CLN3-220ENST00000566040 MADDQ8WXG6 1647 aa15.61■□□□□ 0.09
CLN3-220ENST00000566040 TCOF1Q13428 1488 aaKnown RBP15.59■□□□□ 0.09
CLN3-220ENST00000566040 MAST1Q9Y2H9 1570 aa15.58■□□□□ 0.09
CLN3-220ENST00000566040 CFDP1Q9UEE9 299 aaPredicted RBP15.58■□□□□ 0.08
CLN3-220ENST00000566040 MIA2Q96PC5 1412 aa15.58■□□□□ 0.08
CLN3-220ENST00000566040 DNMT1P26358 1616 aaKnown RBP15.57■□□□□ 0.08
CLN3-220ENST00000566040 C9orf84Q5VXU9 1444 aa15.57■□□□□ 0.08
CLN3-220ENST00000566040 ATP10AO60312 1499 aa15.57■□□□□ 0.08
CLN3-220ENST00000566040 HNRNPMP52272 730 aaKnown RBP eCLIP15.56■□□□□ 0.08
CLN3-220ENST00000566040 FGD6Q6ZV73 1430 aa15.56■□□□□ 0.08
CLN3-220ENST00000566040 CCDC141Q6ZP82 1450 aa15.56■□□□□ 0.08
CLN3-220ENST00000566040 FER1L4A9Z1Z3 1794 aa15.56■□□□□ 0.08
CLN3-220ENST00000566040 RIMS1Q86UR5 1692 aaKnown RBP15.55■□□□□ 0.08
CLN3-220ENST00000566040 AGLP35573 1532 aa15.55■□□□□ 0.08
CLN3-220ENST00000566040 ZNF777Q9ULD5 760 aaPredicted RBP15.55■□□□□ 0.08
CLN3-220ENST00000566040 RTEL1-TNFRSF6BF6WH68 1400 aa15.5■□□□□ 0.07
CLN3-220ENST00000566040 ABCC5O15440 1437 aa15.49■□□□□ 0.07
CLN3-220ENST00000566040 SHANK2Q9UPX8 1470 aa15.48■□□□□ 0.07
CLN3-220ENST00000566040 MROH1Q8NDA8 1641 aa15.47■□□□□ 0.07
CLN3-220ENST00000566040 A2MP01023 1474 aa15.46■□□□□ 0.07
CLN3-220ENST00000566040 SPAG9O60271 1321 aaKnown RBP15.46■□□□□ 0.07
CLN3-220ENST00000566040 DAPK1P53355 1430 aa15.46■□□□□ 0.07
CLN3-220ENST00000566040 C3P01024 1663 aa15.46■□□□□ 0.07
CLN3-220ENST00000566040 RNF17Q9BXT8 1623 aaKnown RBP15.46■□□□□ 0.06
CLN3-220ENST00000566040 PTPRMP28827 1452 aa15.46■□□□□ 0.06
CLN3-220ENST00000566040 EIF2AK4Q9P2K8 1649 aaKnown RBP15.44■□□□□ 0.06
CLN3-220ENST00000566040 MROH2AA6NES4 1674 aa15.44■□□□□ 0.06
CLN3-220ENST00000566040 PTPRKQ15262 1439 aa15.43■□□□□ 0.06
CLN3-220ENST00000566040 APLP2Q06481 763 aa15.43■□□□□ 0.06
CLN3-220ENST00000566040 CLTCQ00610 1675 aaKnown RBP15.43■□□□□ 0.06
CLN3-220ENST00000566040 PPARGC1BQ86YN6 1023 aaKnown RBP15.42■□□□□ 0.06
CLN3-220ENST00000566040 DEPDC5O75140 1603 aa15.42■□□□□ 0.06
CLN3-220ENST00000566040 ADGRL2O95490 1459 aa15.41■□□□□ 0.06
CLN3-220ENST00000566040 RRBP1Q9P2E9 1410 aaKnown RBP15.39■□□□□ 0.05
CLN3-220ENST00000566040 DHX29Q7Z478 1369 aaKnown RBP15.37■□□□□ 0.05
CLN3-220ENST00000566040 CEP152O94986 1710 aa15.37■□□□□ 0.05
CLN3-220ENST00000566040 DUOX2Q9NRD8 1548 aa15.37■□□□□ 0.05
CLN3-220ENST00000566040 PRDM15P57071 1507 aaPredicted RBP15.35■□□□□ 0.05
CLN3-220ENST00000566040 RSPH4AQ5TD94 716 aa15.35■□□□□ 0.05
CLN3-220ENST00000566040 ARID4BQ4LE39 1312 aaPredicted RBP15.35■□□□□ 0.05
CLN3-220ENST00000566040 ZC3H13Q5T200 1668 aaKnown RBP15.34■□□□□ 0.05
CLN3-220ENST00000566040 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.34■□□□□ 0.05
CLN3-220ENST00000566040 NCOA1Q15788 1441 aa15.34■□□□□ 0.05
CLN3-220ENST00000566040 VWDEQ8N2E2 1590 aa15.33■□□□□ 0.05
CLN3-220ENST00000566040 PREX1Q8TCU6 1659 aa15.33■□□□□ 0.04
CLN3-220ENST00000566040 MLECQ14165 292 aa15.33■□□□□ 0.04
CLN3-220ENST00000566040 FAM135AQ9P2D6 1515 aa15.33■□□□□ 0.04
CLN3-220ENST00000566040 KDM5DQ9BY66 1539 aa15.32■□□□□ 0.04
CLN3-220ENST00000566040 KIF15Q9NS87 1388 aa15.31■□□□□ 0.04
CLN3-220ENST00000566040 LMTK3Q96Q04 1460 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms