RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CEP162Q5TB80 1403 aa33.23■■■□□ 2.91
CLN3-219ENST00000565778 POGZQ7Z3K3 1410 aa33.2■■■□□ 2.91
CLN3-219ENST00000565778 MAGI2Q86UL8 1455 aa33.18■■■□□ 2.9
CLN3-219ENST00000565778 AFAP1Q8N556 730 aa33.18■■■□□ 2.9
CLN3-219ENST00000565778 MYT1LQ9UL68 1186 aa33.18■■■□□ 2.9
CLN3-219ENST00000565778 YEATS2Q9ULM3 1422 aa33.18■■■□□ 2.9
CLN3-219ENST00000565778 ZMYM4Q5VZL5 1548 aa33.17■■■□□ 2.9
CLN3-219ENST00000565778 ARHGEF40Q8TER5 1519 aa33.17■■■□□ 2.9
CLN3-219ENST00000565778 ZFYVE16Q7Z3T8 1539 aa33.16■■■□□ 2.9
CLN3-219ENST00000565778 ZNF777Q9ULD5 760 aaPredicted RBP33.12■■■□□ 2.89
CLN3-219ENST00000565778 MTUS2Q5JR59 1369 aa33.1■■■□□ 2.89
CLN3-219ENST00000565778 CDC42BPBQ9Y5S2 1711 aa33.1■■■□□ 2.89
CLN3-219ENST00000565778 ZNF518AQ6AHZ1 1483 aa33.09■■■□□ 2.89
CLN3-219ENST00000565778 ADAMTSL3P82987 1691 aa33.09■■■□□ 2.89
CLN3-219ENST00000565778 MLECQ14165 292 aa33.07■■■□□ 2.88
CLN3-219ENST00000565778 BCORL1Q5H9F3 1711 aa33.07■■■□□ 2.88
CLN3-219ENST00000565778 PTPRMP28827 1452 aa33.05■■■□□ 2.88
CLN3-219ENST00000565778 PREX2Q70Z35 1606 aa33.05■■■□□ 2.88
CLN3-219ENST00000565778 ATP10AO60312 1499 aa33.05■■■□□ 2.88
CLN3-219ENST00000565778 CFDP1Q9UEE9 299 aaPredicted RBP33.02■■■□□ 2.88
CLN3-219ENST00000565778 CCNB3Q8WWL7 1395 aa33.01■■■□□ 2.88
CLN3-219ENST00000565778 GPATCH8Q9UKJ3 1502 aaKnown RBP33.01■■■□□ 2.87
CLN3-219ENST00000565778 TRAPPC8Q9Y2L5 1435 aa33■■■□□ 2.87
CLN3-219ENST00000565778 ARHGEF12Q9NZN5 1544 aa32.98■■■□□ 2.87
CLN3-219ENST00000565778 CDC42BPAQ5VT25 1732 aa32.98■■■□□ 2.87
CLN3-219ENST00000565778 C9orf84Q5VXU9 1444 aa32.97■■■□□ 2.87
CLN3-219ENST00000565778 MADDQ8WXG6 1647 aa32.97■■■□□ 2.87
CLN3-219ENST00000565778 HECW2Q9P2P5 1572 aa32.96■■■□□ 2.87
CLN3-219ENST00000565778 HNRNPMP52272 730 aaKnown RBP eCLIP32.96■■■□□ 2.87
CLN3-219ENST00000565778 PLPPR3Q6T4P5 718 aa32.96■■■□□ 2.87
CLN3-219ENST00000565778 ABCC1P33527 1531 aa32.95■■■□□ 2.87
CLN3-219ENST00000565778 KDM5CP41229 1560 aa32.95■■■□□ 2.86
CLN3-219ENST00000565778 MLH3Q9UHC1 1453 aa32.92■■■□□ 2.86
CLN3-219ENST00000565778 SIGLEC1Q9BZZ2 1709 aa32.91■■■□□ 2.86
CLN3-219ENST00000565778 RIMS1Q86UR5 1692 aaKnown RBP32.88■■■□□ 2.85
CLN3-219ENST00000565778 ITSN2Q9NZM3 1697 aa32.87■■■□□ 2.85
CLN3-219ENST00000565778 EHBP1L1Q8N3D4 1523 aa32.87■■■□□ 2.85
CLN3-219ENST00000565778 SAMD9LQ8IVG5 1584 aa32.86■■■□□ 2.85
CLN3-219ENST00000565778 SPAG9O60271 1321 aaKnown RBP32.85■■■□□ 2.85
CLN3-219ENST00000565778 VPS8Q8N3P4 1428 aa32.85■■■□□ 2.85
CLN3-219ENST00000565778 ZNF644Q9H582 1327 aaPredicted RBP32.82■■■□□ 2.84
CLN3-219ENST00000565778 PLEKHH2Q8IVE3 1493 aa32.82■■■□□ 2.84
CLN3-219ENST00000565778 KIAA1107Q9UPP5 1409 aa32.82■■■□□ 2.84
CLN3-219ENST00000565778 DIP2CQ9Y2E4 1556 aa32.82■■■□□ 2.84
CLN3-219ENST00000565778 SYCP2Q9BX26 1530 aa32.82■■■□□ 2.84
CLN3-219ENST00000565778 ABCA6Q8N139 1617 aa32.77■■■□□ 2.84
CLN3-219ENST00000565778 TIAM1Q13009 1591 aa32.76■■■□□ 2.84
CLN3-219ENST00000565778 ESF1Q9H501 851 aaKnown RBP32.75■■■□□ 2.83
CLN3-219ENST00000565778 KIDINS220Q9ULH0 1771 aa32.74■■■□□ 2.83
CLN3-219ENST00000565778 CEBPAP49715 358 aaPredicted RBP32.74■■■□□ 2.83
CLN3-219ENST00000565778 REREQ9P2R6 1566 aa32.73■■■□□ 2.83
CLN3-219ENST00000565778 NCOA2Q15596 1464 aa32.73■■■□□ 2.83
CLN3-219ENST00000565778 FER1L4A9Z1Z3 1794 aa32.73■■■□□ 2.83
CLN3-219ENST00000565778 SUPT6HQ7KZ85 1726 aaKnown RBP32.68■■■□□ 2.82
CLN3-219ENST00000565778 AGLP35573 1532 aa32.68■■■□□ 2.82
CLN3-219ENST00000565778 KANK4Q5T7N3 995 aaPredicted RBP32.68■■■□□ 2.82
CLN3-219ENST00000565778 LRRC9Q6ZRR7 1453 aa32.67■■■□□ 2.82
CLN3-219ENST00000565778 APLP2Q06481 763 aa32.65■■■□□ 2.82
CLN3-219ENST00000565778 LMTK3Q96Q04 1460 aa32.64■■■□□ 2.82
CLN3-219ENST00000565778 ATP7AQ04656 1500 aa32.63■■■□□ 2.81
CLN3-219ENST00000565778 MBD5Q9P267 1494 aa32.63■■■□□ 2.81
CLN3-219ENST00000565778 HSPA2P54652 639 aa32.63■■■□□ 2.81
CLN3-219ENST00000565778 RSPH4AQ5TD94 716 aa32.61■■■□□ 2.81
CLN3-219ENST00000565778 MAP3K1Q13233 1512 aa32.59■■■□□ 2.81
CLN3-219ENST00000565778 A2MP01023 1474 aa32.58■■■□□ 2.81
CLN3-219ENST00000565778 INO80Q9ULG1 1556 aaPredicted RBP32.55■■■□□ 2.8
CLN3-219ENST00000565778 GGT6Q6P531 493 aa32.55■■■□□ 2.8
CLN3-219ENST00000565778 CAMSAP2Q08AD1 1489 aa32.54■■■□□ 2.8
CLN3-219ENST00000565778 RTEL1-TNFRSF6BF6WH68 1400 aa32.53■■■□□ 2.8
CLN3-219ENST00000565778 TSPY4P0CV99 314 aa32.53■■■□□ 2.8
CLN3-219ENST00000565778 TSPY10P0CW01 314 aa32.53■■■□□ 2.8
CLN3-219ENST00000565778 CNTLNQ9NXG0 1405 aa32.5■■■□□ 2.79
CLN3-219ENST00000565778 CCDC141Q6ZP82 1450 aa32.49■■■□□ 2.79
CLN3-219ENST00000565778 DHX29Q7Z478 1369 aaKnown RBP32.45■■■□□ 2.79
CLN3-219ENST00000565778 ZMYM3Q14202 1370 aa32.44■■■□□ 2.78
CLN3-219ENST00000565778 PLXNC1O60486 1568 aa32.43■■■□□ 2.78
CLN3-219ENST00000565778 ILDR1Q86SU0 546 aaPredicted RBP32.42■■■□□ 2.78
CLN3-219ENST00000565778 PPP6R1Q9UPN7 881 aa32.42■■■□□ 2.78
CLN3-219ENST00000565778 ADGBQ8N7X0 1667 aa32.42■■■□□ 2.78
CLN3-219ENST00000565778 MYOM3Q5VTT5 1437 aa32.42■■■□□ 2.78
CLN3-219ENST00000565778 UHRF1BP1Q6BDS2 1440 aa32.42■■■□□ 2.78
CLN3-219ENST00000565778 C3P01024 1663 aa32.41■■■□□ 2.78
CLN3-219ENST00000565778 KIF3BO15066 747 aa32.41■■■□□ 2.78
CLN3-219ENST00000565778 MIA2Q96PC5 1412 aa32.4■■■□□ 2.78
CLN3-219ENST00000565778 PREX1Q8TCU6 1659 aa32.39■■■□□ 2.78
CLN3-219ENST00000565778 SETD1BQ9UPS6 1966 aaKnown RBP32.39■■■□□ 2.78
CLN3-219ENST00000565778 ARHGEF5Q12774 1597 aa32.37■■■□□ 2.77
CLN3-219ENST00000565778 MROH2AA6NES4 1674 aa32.29■■■□□ 2.76
CLN3-219ENST00000565778 CLTCQ00610 1675 aaKnown RBP32.29■■■□□ 2.76
CLN3-219ENST00000565778 NPATQ14207 1427 aa32.28■■■□□ 2.76
CLN3-219ENST00000565778 DMRT2Q9Y5R5 561 aa32.27■■■□□ 2.76
CLN3-219ENST00000565778 WASHC2CQ9Y4E1 1318 aa32.26■■■□□ 2.75
CLN3-219ENST00000565778 PTPRKQ15262 1439 aa32.2■■■□□ 2.75
CLN3-219ENST00000565778 MAST1Q9Y2H9 1570 aa32.19■■■□□ 2.74
CLN3-219ENST00000565778 FGD6Q6ZV73 1430 aa32.17■■■□□ 2.74
CLN3-219ENST00000565778 PTPN23Q9H3S7 1636 aa32.17■■■□□ 2.74
CLN3-219ENST00000565778 RRP7BPQ9NSQ0 103 aa32.16■■■□□ 2.74
CLN3-219ENST00000565778 FBXO31Q5XUX0 539 aaPredicted RBP32.15■■■□□ 2.74
CLN3-219ENST00000565778 FBXO41Q8TF61 875 aa32.15■■■□□ 2.74
CLN3-219ENST00000565778 ABCC5O15440 1437 aa32.15■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms