RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 EFCAB2Q5VUJ9 269 aa14.12□□□□□ -0.15
CAPN3-213ENST00000565173 TROQ12816 1431 aaPredicted RBP14.12□□□□□ -0.15
CAPN3-213ENST00000565173 POGZQ7Z3K3 1410 aa14.12□□□□□ -0.15
CAPN3-213ENST00000565173 LRRIQ1Q96JM4 1722 aa14.12□□□□□ -0.15
CAPN3-213ENST00000565173 ZFYVE16Q7Z3T8 1539 aa14.11□□□□□ -0.15
CAPN3-213ENST00000565173 MYO5CQ9NQX4 1742 aa14.1□□□□□ -0.15
CAPN3-213ENST00000565173 CASKIN1Q8WXD9 1431 aa14.08□□□□□ -0.15
CAPN3-213ENST00000565173 LMTK3Q96Q04 1460 aa14.08□□□□□ -0.16
CAPN3-213ENST00000565173 RIMS1Q86UR5 1692 aaKnown RBP14.07□□□□□ -0.16
CAPN3-213ENST00000565173 PCF11O94913 1555 aaKnown RBP14.07□□□□□ -0.16
CAPN3-213ENST00000565173 ATP10AO60312 1499 aa14.06□□□□□ -0.16
CAPN3-213ENST00000565173 AFAP1Q8N556 730 aa14.06□□□□□ -0.16
CAPN3-213ENST00000565173 CLIP1P30622 1438 aa14.06□□□□□ -0.16
CAPN3-213ENST00000565173 MLECQ14165 292 aa14.05□□□□□ -0.16
CAPN3-213ENST00000565173 ARHGAP5Q13017 1502 aa14.05□□□□□ -0.16
CAPN3-213ENST00000565173 ZNF518AQ6AHZ1 1483 aa14.04□□□□□ -0.16
CAPN3-213ENST00000565173 CDC42BPBQ9Y5S2 1711 aa14.04□□□□□ -0.16
CAPN3-213ENST00000565173 C9orf84Q5VXU9 1444 aa14.03□□□□□ -0.16
CAPN3-213ENST00000565173 CCDC18Q5T9S5 1454 aa14.03□□□□□ -0.16
CAPN3-213ENST00000565173 KDM5CP41229 1560 aa14.03□□□□□ -0.16
CAPN3-213ENST00000565173 ARHGEF12Q9NZN5 1544 aa14.02□□□□□ -0.16
CAPN3-213ENST00000565173 PLPPR3Q6T4P5 718 aa14.01□□□□□ -0.17
CAPN3-213ENST00000565173 HSPA2P54652 639 aa14□□□□□ -0.17
CAPN3-213ENST00000565173 FYCO1Q9BQS8 1478 aa13.99□□□□□ -0.17
CAPN3-213ENST00000565173 TRAPPC8Q9Y2L5 1435 aa13.99□□□□□ -0.17
CAPN3-213ENST00000565173 PREX2Q70Z35 1606 aa13.99□□□□□ -0.17
CAPN3-213ENST00000565173 MLH3Q9UHC1 1453 aa13.99□□□□□ -0.17
CAPN3-213ENST00000565173 FER1L4A9Z1Z3 1794 aa13.99□□□□□ -0.17
CAPN3-213ENST00000565173 DIP2CQ9Y2E4 1556 aa13.97□□□□□ -0.17
CAPN3-213ENST00000565173 ABCC1P33527 1531 aa13.97□□□□□ -0.17
CAPN3-213ENST00000565173 CEBPAP49715 358 aaPredicted RBP13.97□□□□□ -0.17
CAPN3-213ENST00000565173 REREQ9P2R6 1566 aa13.96□□□□□ -0.17
CAPN3-213ENST00000565173 CDC42BPAQ5VT25 1732 aa13.96□□□□□ -0.17
CAPN3-213ENST00000565173 FBXO41Q8TF61 875 aa13.96□□□□□ -0.17
CAPN3-213ENST00000565173 ABCA6Q8N139 1617 aa13.95□□□□□ -0.18
CAPN3-213ENST00000565173 GPATCH8Q9UKJ3 1502 aaKnown RBP13.95□□□□□ -0.18
CAPN3-213ENST00000565173 MYT1LQ9UL68 1186 aa13.94□□□□□ -0.18
CAPN3-213ENST00000565173 ITSN2Q9NZM3 1697 aa13.94□□□□□ -0.18
CAPN3-213ENST00000565173 KIDINS220Q9ULH0 1771 aa13.92□□□□□ -0.18
CAPN3-213ENST00000565173 AGLP35573 1532 aa13.92□□□□□ -0.18
CAPN3-213ENST00000565173 ZNF777Q9ULD5 760 aaPredicted RBP13.91□□□□□ -0.18
CAPN3-213ENST00000565173 SAMD9LQ8IVG5 1584 aa13.91□□□□□ -0.18
CAPN3-213ENST00000565173 HNRNPMP52272 730 aaKnown RBP eCLIP13.9□□□□□ -0.18
CAPN3-213ENST00000565173 PREX1Q8TCU6 1659 aa13.88□□□□□ -0.19
CAPN3-213ENST00000565173 SYCP2Q9BX26 1530 aa13.88□□□□□ -0.19
CAPN3-213ENST00000565173 KIAA1107Q9UPP5 1409 aa13.88□□□□□ -0.19
CAPN3-213ENST00000565173 CFDP1Q9UEE9 299 aaPredicted RBP13.87□□□□□ -0.19
CAPN3-213ENST00000565173 SPAG9O60271 1321 aaKnown RBP13.87□□□□□ -0.19
CAPN3-213ENST00000565173 C3P01024 1663 aa13.86□□□□□ -0.19
CAPN3-213ENST00000565173 SETD1BQ9UPS6 1966 aaKnown RBP13.85□□□□□ -0.19
CAPN3-213ENST00000565173 MTUS2Q5JR59 1369 aa13.85□□□□□ -0.19
CAPN3-213ENST00000565173 CCNB3Q8WWL7 1395 aa13.85□□□□□ -0.19
CAPN3-213ENST00000565173 STRCQ7RTU9 1775 aa13.84□□□□□ -0.19
CAPN3-213ENST00000565173 UHRF1BP1Q6BDS2 1440 aa13.84□□□□□ -0.19
CAPN3-213ENST00000565173 PLEKHH2Q8IVE3 1493 aa13.84□□□□□ -0.19
CAPN3-213ENST00000565173 ZNF644Q9H582 1327 aaPredicted RBP13.84□□□□□ -0.19
CAPN3-213ENST00000565173 CEP162Q5TB80 1403 aa13.83□□□□□ -0.2
CAPN3-213ENST00000565173 CERKQ8TCT0 537 aa13.83□□□□□ -0.2
CAPN3-213ENST00000565173 ESF1Q9H501 851 aaKnown RBP13.83□□□□□ -0.2
CAPN3-213ENST00000565173 ATP7AQ04656 1500 aa13.82□□□□□ -0.2
CAPN3-213ENST00000565173 CNTLNQ9NXG0 1405 aa13.81□□□□□ -0.2
CAPN3-213ENST00000565173 MBD5Q9P267 1494 aa13.81□□□□□ -0.2
CAPN3-213ENST00000565173 TIAM1Q13009 1591 aa13.81□□□□□ -0.2
CAPN3-213ENST00000565173 INO80Q9ULG1 1556 aaPredicted RBP13.81□□□□□ -0.2
CAPN3-213ENST00000565173 PLXNC1O60486 1568 aa13.8□□□□□ -0.2
CAPN3-213ENST00000565173 DMRT2Q9Y5R5 561 aa13.8□□□□□ -0.2
CAPN3-213ENST00000565173 ZMYM3Q14202 1370 aa13.8□□□□□ -0.2
CAPN3-213ENST00000565173 A2MP01023 1474 aa13.8□□□□□ -0.2
CAPN3-213ENST00000565173 EHBP1L1Q8N3D4 1523 aa13.8□□□□□ -0.2
CAPN3-213ENST00000565173 SUPT6HQ7KZ85 1726 aaKnown RBP13.79□□□□□ -0.2
CAPN3-213ENST00000565173 MROH2AA6NES4 1674 aa13.77□□□□□ -0.21
CAPN3-213ENST00000565173 NPATQ14207 1427 aa13.77□□□□□ -0.21
CAPN3-213ENST00000565173 PTPRTO14522 1441 aa13.76□□□□□ -0.21
CAPN3-213ENST00000565173 RTEL1-TNFRSF6BF6WH68 1400 aa13.75□□□□□ -0.21
CAPN3-213ENST00000565173 LOC105371045A0A1W2PR82 267 aa13.75□□□□□ -0.21
CAPN3-213ENST00000565173 GGT6Q6P531 493 aa13.75□□□□□ -0.21
CAPN3-213ENST00000565173 PPP6R1Q9UPN7 881 aa13.74□□□□□ -0.21
CAPN3-213ENST00000565173 CLTCQ00610 1675 aaKnown RBP13.74□□□□□ -0.21
CAPN3-213ENST00000565173 NCOA2Q15596 1464 aa13.74□□□□□ -0.21
CAPN3-213ENST00000565173 NCOA1Q15788 1441 aa13.73□□□□□ -0.21
CAPN3-213ENST00000565173 DHX29Q7Z478 1369 aaKnown RBP13.73□□□□□ -0.21
CAPN3-213ENST00000565173 ADGBQ8N7X0 1667 aa13.73□□□□□ -0.21
CAPN3-213ENST00000565173 PTPRKQ15262 1439 aa13.73□□□□□ -0.21
CAPN3-213ENST00000565173 CAMSAP1Q5T5Y3 1602 aa13.71□□□□□ -0.22
CAPN3-213ENST00000565173 CAMSAP2Q08AD1 1489 aa13.7□□□□□ -0.22
CAPN3-213ENST00000565173 RSPH4AQ5TD94 716 aa13.7□□□□□ -0.22
CAPN3-213ENST00000565173 CCDC141Q6ZP82 1450 aa13.69□□□□□ -0.22
CAPN3-213ENST00000565173 LTBP4Q8N2S1 1624 aa13.69□□□□□ -0.22
CAPN3-213ENST00000565173 VPS8Q8N3P4 1428 aa13.69□□□□□ -0.22
CAPN3-213ENST00000565173 LRRC9Q6ZRR7 1453 aa13.68□□□□□ -0.22
CAPN3-213ENST00000565173 NCKAP5LQ9HCH0 1330 aa13.68□□□□□ -0.22
CAPN3-213ENST00000565173 KANK4Q5T7N3 995 aaPredicted RBP13.68□□□□□ -0.22
CAPN3-213ENST00000565173 KIF3BO15066 747 aa13.67□□□□□ -0.22
CAPN3-213ENST00000565173 MYO3AQ8NEV4 1616 aa13.67□□□□□ -0.22
CAPN3-213ENST00000565173 ARHGEF5Q12774 1597 aa13.66□□□□□ -0.22
CAPN3-213ENST00000565173 CEP170BQ9Y4F5 1589 aaPredicted RBP13.66□□□□□ -0.22
CAPN3-213ENST00000565173 ZNF142P52746 1687 aaPredicted RBP13.66□□□□□ -0.22
CAPN3-213ENST00000565173 FBXO31Q5XUX0 539 aaPredicted RBP13.65□□□□□ -0.22
CAPN3-213ENST00000565173 PLA2R1Q13018 1463 aa13.65□□□□□ -0.22
CAPN3-213ENST00000565173 TCOF1Q13428 1488 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms