RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 FBXO41Q8TF61 875 aa21.88■■□□□ 1.09
VPS9D1-204ENST00000565023 SCAPERQ9BY12 1400 aa21.88■■□□□ 1.09
VPS9D1-204ENST00000565023 EFCAB2Q5VUJ9 269 aa21.87■■□□□ 1.09
VPS9D1-204ENST00000565023 ARID4BQ4LE39 1312 aaPredicted RBP21.85■■□□□ 1.09
VPS9D1-204ENST00000565023 CDC42BPBQ9Y5S2 1711 aa21.85■■□□□ 1.09
VPS9D1-204ENST00000565023 ARHGEF40Q8TER5 1519 aa21.82■■□□□ 1.08
VPS9D1-204ENST00000565023 PREX2Q70Z35 1606 aa21.81■■□□□ 1.08
VPS9D1-204ENST00000565023 CDC42BPAQ5VT25 1732 aa21.8■■□□□ 1.08
VPS9D1-204ENST00000565023 ZFYVE16Q7Z3T8 1539 aa21.8■■□□□ 1.08
VPS9D1-204ENST00000565023 POGZQ7Z3K3 1410 aa21.8■■□□□ 1.08
VPS9D1-204ENST00000565023 YEATS2Q9ULM3 1422 aa21.8■■□□□ 1.08
VPS9D1-204ENST00000565023 ZMYM4Q5VZL5 1548 aa21.79■■□□□ 1.08
VPS9D1-204ENST00000565023 MYT1LQ9UL68 1186 aa21.78■■□□□ 1.08
VPS9D1-204ENST00000565023 MTUS2Q5JR59 1369 aa21.76■■□□□ 1.07
VPS9D1-204ENST00000565023 ZNF777Q9ULD5 760 aaPredicted RBP21.76■■□□□ 1.07
VPS9D1-204ENST00000565023 BCORL1Q5H9F3 1711 aa21.75■■□□□ 1.07
VPS9D1-204ENST00000565023 ADAMTSL3P82987 1691 aa21.73■■□□□ 1.07
VPS9D1-204ENST00000565023 AFAP1Q8N556 730 aa21.73■■□□□ 1.07
VPS9D1-204ENST00000565023 SIGLEC1Q9BZZ2 1709 aa21.72■■□□□ 1.07
VPS9D1-204ENST00000565023 MADDQ8WXG6 1647 aa21.71■■□□□ 1.07
VPS9D1-204ENST00000565023 MLECQ14165 292 aa21.71■■□□□ 1.07
VPS9D1-204ENST00000565023 ITSN2Q9NZM3 1697 aa21.71■■□□□ 1.07
VPS9D1-204ENST00000565023 ZNF518AQ6AHZ1 1483 aa21.71■■□□□ 1.07
VPS9D1-204ENST00000565023 MAGI2Q86UL8 1455 aa21.71■■□□□ 1.07
VPS9D1-204ENST00000565023 ABCC1P33527 1531 aa21.7■■□□□ 1.07
VPS9D1-204ENST00000565023 GPATCH8Q9UKJ3 1502 aaKnown RBP21.69■■□□□ 1.06
VPS9D1-204ENST00000565023 PLPPR3Q6T4P5 718 aa21.68■■□□□ 1.06
VPS9D1-204ENST00000565023 CCNB3Q8WWL7 1395 aa21.68■■□□□ 1.06
VPS9D1-204ENST00000565023 EHBP1L1Q8N3D4 1523 aa21.68■■□□□ 1.06
VPS9D1-204ENST00000565023 ARHGEF12Q9NZN5 1544 aa21.68■■□□□ 1.06
VPS9D1-204ENST00000565023 RIMS1Q86UR5 1692 aaKnown RBP21.68■■□□□ 1.06
VPS9D1-204ENST00000565023 TRAPPC8Q9Y2L5 1435 aa21.67■■□□□ 1.06
VPS9D1-204ENST00000565023 KDM5CP41229 1560 aa21.66■■□□□ 1.06
VPS9D1-204ENST00000565023 SAMD9LQ8IVG5 1584 aa21.66■■□□□ 1.06
VPS9D1-204ENST00000565023 ATP10AO60312 1499 aa21.65■■□□□ 1.06
VPS9D1-204ENST00000565023 CFDP1Q9UEE9 299 aaPredicted RBP21.65■■□□□ 1.06
VPS9D1-204ENST00000565023 PTPRMP28827 1452 aa21.64■■□□□ 1.06
VPS9D1-204ENST00000565023 VPS8Q8N3P4 1428 aa21.64■■□□□ 1.06
VPS9D1-204ENST00000565023 SYCP2Q9BX26 1530 aa21.64■■□□□ 1.05
VPS9D1-204ENST00000565023 C9orf84Q5VXU9 1444 aa21.63■■□□□ 1.05
VPS9D1-204ENST00000565023 TIAM1Q13009 1591 aa21.62■■□□□ 1.05
VPS9D1-204ENST00000565023 HNRNPMP52272 730 aaKnown RBP eCLIP21.62■■□□□ 1.05
VPS9D1-204ENST00000565023 DIP2CQ9Y2E4 1556 aa21.61■■□□□ 1.05
VPS9D1-204ENST00000565023 ABCA6Q8N139 1617 aa21.61■■□□□ 1.05
VPS9D1-204ENST00000565023 FER1L4A9Z1Z3 1794 aa21.6■■□□□ 1.05
VPS9D1-204ENST00000565023 SUPT6HQ7KZ85 1726 aaKnown RBP21.6■■□□□ 1.05
VPS9D1-204ENST00000565023 KIDINS220Q9ULH0 1771 aa21.58■■□□□ 1.04
VPS9D1-204ENST00000565023 MLH3Q9UHC1 1453 aa21.57■■□□□ 1.04
VPS9D1-204ENST00000565023 ZNF644Q9H582 1327 aaPredicted RBP21.55■■□□□ 1.04
VPS9D1-204ENST00000565023 NCOA2Q15596 1464 aa21.55■■□□□ 1.04
VPS9D1-204ENST00000565023 LMTK3Q96Q04 1460 aa21.55■■□□□ 1.04
VPS9D1-204ENST00000565023 SPAG9O60271 1321 aaKnown RBP21.54■■□□□ 1.04
VPS9D1-204ENST00000565023 PLEKHH2Q8IVE3 1493 aa21.53■■□□□ 1.04
VPS9D1-204ENST00000565023 LRRC9Q6ZRR7 1453 aa21.51■■□□□ 1.03
VPS9D1-204ENST00000565023 KANK4Q5T7N3 995 aaPredicted RBP21.5■■□□□ 1.03
VPS9D1-204ENST00000565023 KIAA1107Q9UPP5 1409 aa21.49■■□□□ 1.03
VPS9D1-204ENST00000565023 ATP7AQ04656 1500 aa21.49■■□□□ 1.03
VPS9D1-204ENST00000565023 REREQ9P2R6 1566 aa21.48■■□□□ 1.03
VPS9D1-204ENST00000565023 INO80Q9ULG1 1556 aaPredicted RBP21.46■■□□□ 1.03
VPS9D1-204ENST00000565023 APLP2Q06481 763 aa21.46■■□□□ 1.03
VPS9D1-204ENST00000565023 CAMSAP2Q08AD1 1489 aa21.45■■□□□ 1.03
VPS9D1-204ENST00000565023 CEBPAP49715 358 aaPredicted RBP21.45■■□□□ 1.02
VPS9D1-204ENST00000565023 ESF1Q9H501 851 aaKnown RBP21.43■■□□□ 1.02
VPS9D1-204ENST00000565023 AGLP35573 1532 aa21.42■■□□□ 1.02
VPS9D1-204ENST00000565023 MAP3K1Q13233 1512 aa21.42■■□□□ 1.02
VPS9D1-204ENST00000565023 MBD5Q9P267 1494 aa21.42■■□□□ 1.02
VPS9D1-204ENST00000565023 A2MP01023 1474 aa21.39■■□□□ 1.01
VPS9D1-204ENST00000565023 ADGBQ8N7X0 1667 aa21.38■■□□□ 1.01
VPS9D1-204ENST00000565023 HSPA2P54652 639 aa21.38■■□□□ 1.01
VPS9D1-204ENST00000565023 CCDC141Q6ZP82 1450 aa21.38■■□□□ 1.01
VPS9D1-204ENST00000565023 C3P01024 1663 aa21.36■■□□□ 1.01
VPS9D1-204ENST00000565023 ILDR2Q71H61 639 aa21.35■■□□□ 1.01
VPS9D1-204ENST00000565023 SOCS7O14512 581 aa21.34■■□□□ 1.01
VPS9D1-204ENST00000565023 GGT6Q6P531 493 aa21.34■■□□□ 1.01
VPS9D1-204ENST00000565023 PLXNC1O60486 1568 aa21.34■■□□□ 1.01
VPS9D1-204ENST00000565023 MYOM3Q5VTT5 1437 aa21.33■■□□□ 1.01
VPS9D1-204ENST00000565023 PREX1Q8TCU6 1659 aa21.32■■□□□ 1
VPS9D1-204ENST00000565023 CLTCQ00610 1675 aaKnown RBP21.31■■□□□ 1
VPS9D1-204ENST00000565023 RTEL1-TNFRSF6BF6WH68 1400 aa21.31■■□□□ 1
VPS9D1-204ENST00000565023 ARHGEF5Q12774 1597 aa21.31■■□□□ 1
VPS9D1-204ENST00000565023 TSPY4P0CV99 314 aa21.3■■□□□ 1
VPS9D1-204ENST00000565023 TSPY10P0CW01 314 aa21.3■■□□□ 1
VPS9D1-204ENST00000565023 RSPH4AQ5TD94 716 aa21.29■■□□□ 1
VPS9D1-204ENST00000565023 CNTLNQ9NXG0 1405 aa21.27■■□□□ 1
VPS9D1-204ENST00000565023 MIA2Q96PC5 1412 aa21.26■□□□□ 0.99
VPS9D1-204ENST00000565023 SETD1BQ9UPS6 1966 aaKnown RBP21.26■□□□□ 0.99
VPS9D1-204ENST00000565023 DHX29Q7Z478 1369 aaKnown RBP21.25■□□□□ 0.99
VPS9D1-204ENST00000565023 PTPN23Q9H3S7 1636 aa21.25■□□□□ 0.99
VPS9D1-204ENST00000565023 MROH2AA6NES4 1674 aa21.24■□□□□ 0.99
VPS9D1-204ENST00000565023 UHRF1BP1Q6BDS2 1440 aa21.24■□□□□ 0.99
VPS9D1-204ENST00000565023 KIF3BO15066 747 aa21.24■□□□□ 0.99
VPS9D1-204ENST00000565023 CERKQ8TCT0 537 aa21.23■□□□□ 0.99
VPS9D1-204ENST00000565023 ZMYM3Q14202 1370 aa21.23■□□□□ 0.99
VPS9D1-204ENST00000565023 DISP3Q9P2K9 1392 aa21.22■□□□□ 0.99
VPS9D1-204ENST00000565023 MAST1Q9Y2H9 1570 aa21.2■□□□□ 0.98
VPS9D1-204ENST00000565023 FGD6Q6ZV73 1430 aa21.18■□□□□ 0.98
VPS9D1-204ENST00000565023 CROCC2H7BZ55 1655 aa21.17■□□□□ 0.98
VPS9D1-204ENST00000565023 PPARGC1BQ86YN6 1023 aaKnown RBP21.14■□□□□ 0.97
VPS9D1-204ENST00000565023 ABCC5O15440 1437 aa21.13■□□□□ 0.97
VPS9D1-204ENST00000565023 DNMT1P26358 1616 aaKnown RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 262.7 ms