RNA–Protein interactions for RNA: ENST00000565003.5

CMTM3-209, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-209ENST00000565003 ADAMTSL3P82987 1691 aa16.29■□□□□ 0.2
CMTM3-209ENST00000565003 EFCAB2Q5VUJ9 269 aa16.28■□□□□ 0.2
CMTM3-209ENST00000565003 ARHGAP5Q13017 1502 aa16.28■□□□□ 0.2
CMTM3-209ENST00000565003 ZFYVE16Q7Z3T8 1539 aa16.28■□□□□ 0.2
CMTM3-209ENST00000565003 BCORL1Q5H9F3 1711 aa16.27■□□□□ 0.19
CMTM3-209ENST00000565003 HECW2Q9P2P5 1572 aa16.26■□□□□ 0.19
CMTM3-209ENST00000565003 SIGLEC1Q9BZZ2 1709 aa16.25■□□□□ 0.19
CMTM3-209ENST00000565003 ARID4BQ4LE39 1312 aaPredicted RBP16.25■□□□□ 0.19
CMTM3-209ENST00000565003 MAGI2Q86UL8 1455 aa16.25■□□□□ 0.19
CMTM3-209ENST00000565003 CDC42BPBQ9Y5S2 1711 aa16.25■□□□□ 0.19
CMTM3-209ENST00000565003 PREX2Q70Z35 1606 aa16.24■□□□□ 0.19
CMTM3-209ENST00000565003 MADDQ8WXG6 1647 aa16.24■□□□□ 0.19
CMTM3-209ENST00000565003 PTPRMP28827 1452 aa16.23■□□□□ 0.19
CMTM3-209ENST00000565003 CEP162Q5TB80 1403 aa16.22■□□□□ 0.19
CMTM3-209ENST00000565003 ZNF518AQ6AHZ1 1483 aa16.21■□□□□ 0.19
CMTM3-209ENST00000565003 KDM5CP41229 1560 aa16.21■□□□□ 0.18
CMTM3-209ENST00000565003 CDC42BPAQ5VT25 1732 aa16.2■□□□□ 0.18
CMTM3-209ENST00000565003 ABCC1P33527 1531 aa16.19■□□□□ 0.18
CMTM3-209ENST00000565003 AFAP1Q8N556 730 aa16.18■□□□□ 0.18
CMTM3-209ENST00000565003 ARHGEF12Q9NZN5 1544 aa16.18■□□□□ 0.18
CMTM3-209ENST00000565003 RIMS1Q86UR5 1692 aaKnown RBP16.18■□□□□ 0.18
CMTM3-209ENST00000565003 C9orf84Q5VXU9 1444 aa16.17■□□□□ 0.18
CMTM3-209ENST00000565003 ATP10AO60312 1499 aa16.16■□□□□ 0.18
CMTM3-209ENST00000565003 ITSN2Q9NZM3 1697 aa16.16■□□□□ 0.18
CMTM3-209ENST00000565003 TRAPPC8Q9Y2L5 1435 aa16.16■□□□□ 0.18
CMTM3-209ENST00000565003 GPATCH8Q9UKJ3 1502 aaKnown RBP16.15■□□□□ 0.18
CMTM3-209ENST00000565003 MTUS2Q5JR59 1369 aa16.13■□□□□ 0.17
CMTM3-209ENST00000565003 SAMD9LQ8IVG5 1584 aa16.13■□□□□ 0.17
CMTM3-209ENST00000565003 DIP2CQ9Y2E4 1556 aa16.13■□□□□ 0.17
CMTM3-209ENST00000565003 MLECQ14165 292 aa16.13■□□□□ 0.17
CMTM3-209ENST00000565003 ABCA6Q8N139 1617 aa16.12■□□□□ 0.17
CMTM3-209ENST00000565003 MLH3Q9UHC1 1453 aa16.12■□□□□ 0.17
CMTM3-209ENST00000565003 LOC105371045A0A1W2PR82 267 aa16.12■□□□□ 0.17
CMTM3-209ENST00000565003 FER1L4A9Z1Z3 1794 aa16.1■□□□□ 0.17
CMTM3-209ENST00000565003 EHBP1L1Q8N3D4 1523 aa16.1■□□□□ 0.17
CMTM3-209ENST00000565003 SYCP2Q9BX26 1530 aa16.1■□□□□ 0.17
CMTM3-209ENST00000565003 MYT1LQ9UL68 1186 aa16.1■□□□□ 0.17
CMTM3-209ENST00000565003 ZNF777Q9ULD5 760 aaPredicted RBP16.1■□□□□ 0.17
CMTM3-209ENST00000565003 REREQ9P2R6 1566 aa16.09■□□□□ 0.17
CMTM3-209ENST00000565003 CCNB3Q8WWL7 1395 aa16.09■□□□□ 0.17
CMTM3-209ENST00000565003 KIDINS220Q9ULH0 1771 aa16.08■□□□□ 0.17
CMTM3-209ENST00000565003 LMTK3Q96Q04 1460 aa16.08■□□□□ 0.16
CMTM3-209ENST00000565003 TIAM1Q13009 1591 aa16.08■□□□□ 0.16
CMTM3-209ENST00000565003 CFDP1Q9UEE9 299 aaPredicted RBP16.07■□□□□ 0.16
CMTM3-209ENST00000565003 PLPPR3Q6T4P5 718 aa16.06■□□□□ 0.16
CMTM3-209ENST00000565003 KIAA1107Q9UPP5 1409 aa16.05■□□□□ 0.16
CMTM3-209ENST00000565003 PLEKHH2Q8IVE3 1493 aa16.04■□□□□ 0.16
CMTM3-209ENST00000565003 VPS8Q8N3P4 1428 aa16.04■□□□□ 0.16
CMTM3-209ENST00000565003 HNRNPMP52272 730 aaKnown RBP eCLIP16.04■□□□□ 0.16
CMTM3-209ENST00000565003 AGLP35573 1532 aa16.04■□□□□ 0.16
CMTM3-209ENST00000565003 INO80Q9ULG1 1556 aaPredicted RBP16.01■□□□□ 0.15
CMTM3-209ENST00000565003 SPAG9O60271 1321 aaKnown RBP16.01■□□□□ 0.15
CMTM3-209ENST00000565003 ZNF644Q9H582 1327 aaPredicted RBP16.01■□□□□ 0.15
CMTM3-209ENST00000565003 ATP7AQ04656 1500 aa16.01■□□□□ 0.15
CMTM3-209ENST00000565003 NCOA2Q15596 1464 aa16■□□□□ 0.15
CMTM3-209ENST00000565003 SUPT6HQ7KZ85 1726 aaKnown RBP15.99■□□□□ 0.15
CMTM3-209ENST00000565003 CEBPAP49715 358 aaPredicted RBP15.99■□□□□ 0.15
CMTM3-209ENST00000565003 MBD5Q9P267 1494 aa15.98■□□□□ 0.15
CMTM3-209ENST00000565003 HSPA2P54652 639 aa15.97■□□□□ 0.15
CMTM3-209ENST00000565003 PLXNC1O60486 1568 aa15.96■□□□□ 0.15
CMTM3-209ENST00000565003 LRRC9Q6ZRR7 1453 aa15.96■□□□□ 0.14
CMTM3-209ENST00000565003 CAMSAP2Q08AD1 1489 aa15.95■□□□□ 0.14
CMTM3-209ENST00000565003 A2MP01023 1474 aa15.94■□□□□ 0.14
CMTM3-209ENST00000565003 C3P01024 1663 aa15.94■□□□□ 0.14
CMTM3-209ENST00000565003 PREX1Q8TCU6 1659 aa15.94■□□□□ 0.14
CMTM3-209ENST00000565003 ILDR1Q86SU0 546 aaPredicted RBP15.93■□□□□ 0.14
CMTM3-209ENST00000565003 MAP3K1Q13233 1512 aa15.93■□□□□ 0.14
CMTM3-209ENST00000565003 KANK4Q5T7N3 995 aaPredicted RBP15.91■□□□□ 0.14
CMTM3-209ENST00000565003 CNTLNQ9NXG0 1405 aa15.91■□□□□ 0.14
CMTM3-209ENST00000565003 CCDC141Q6ZP82 1450 aa15.91■□□□□ 0.14
CMTM3-209ENST00000565003 ADGBQ8N7X0 1667 aa15.9■□□□□ 0.14
CMTM3-209ENST00000565003 ESF1Q9H501 851 aaKnown RBP15.9■□□□□ 0.14
CMTM3-209ENST00000565003 RTEL1-TNFRSF6BF6WH68 1400 aa15.9■□□□□ 0.14
CMTM3-209ENST00000565003 UHRF1BP1Q6BDS2 1440 aa15.88■□□□□ 0.13
CMTM3-209ENST00000565003 MROH2AA6NES4 1674 aa15.88■□□□□ 0.13
CMTM3-209ENST00000565003 SETD1BQ9UPS6 1966 aaKnown RBP15.87■□□□□ 0.13
CMTM3-209ENST00000565003 ARHGEF5Q12774 1597 aa15.87■□□□□ 0.13
CMTM3-209ENST00000565003 CLTCQ00610 1675 aaKnown RBP15.86■□□□□ 0.13
CMTM3-209ENST00000565003 ZMYM3Q14202 1370 aa15.85■□□□□ 0.13
CMTM3-209ENST00000565003 MYOM3Q5VTT5 1437 aa15.85■□□□□ 0.13
CMTM3-209ENST00000565003 RSPH4AQ5TD94 716 aa15.84■□□□□ 0.13
CMTM3-209ENST00000565003 GGT6Q6P531 493 aa15.84■□□□□ 0.13
CMTM3-209ENST00000565003 DHX29Q7Z478 1369 aaKnown RBP15.84■□□□□ 0.13
CMTM3-209ENST00000565003 NPATQ14207 1427 aa15.82■□□□□ 0.12
CMTM3-209ENST00000565003 MIA2Q96PC5 1412 aa15.82■□□□□ 0.12
CMTM3-209ENST00000565003 STRCQ7RTU9 1775 aa15.81■□□□□ 0.12
CMTM3-209ENST00000565003 MAST1Q9Y2H9 1570 aa15.79■□□□□ 0.12
CMTM3-209ENST00000565003 PTPRKQ15262 1439 aa15.78■□□□□ 0.12
CMTM3-209ENST00000565003 KIF3BO15066 747 aa15.78■□□□□ 0.12
CMTM3-209ENST00000565003 TSPY4P0CV99 314 aa15.78■□□□□ 0.12
CMTM3-209ENST00000565003 TSPY10P0CW01 314 aa15.78■□□□□ 0.12
CMTM3-209ENST00000565003 APLP2Q06481 763 aa15.78■□□□□ 0.12
CMTM3-209ENST00000565003 PPP6R1Q9UPN7 881 aa15.78■□□□□ 0.12
CMTM3-209ENST00000565003 MYO3AQ8NEV4 1616 aa15.76■□□□□ 0.11
CMTM3-209ENST00000565003 KDM5DQ9BY66 1539 aa15.75■□□□□ 0.11
CMTM3-209ENST00000565003 FBXO41Q8TF61 875 aa15.75■□□□□ 0.11
CMTM3-209ENST00000565003 NCOA1Q15788 1441 aa15.75■□□□□ 0.11
CMTM3-209ENST00000565003 ZNF142P52746 1687 aaPredicted RBP15.74■□□□□ 0.11
CMTM3-209ENST00000565003 PTPN23Q9H3S7 1636 aa15.74■□□□□ 0.11
CMTM3-209ENST00000565003 FAM135AQ9P2D6 1515 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms