RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CDC42BPBQ9Y5S2 1711 aa17.6■□□□□ 0.41
VPS39-208ENST00000564994 SIGLEC1Q9BZZ2 1709 aa17.58■□□□□ 0.41
VPS39-208ENST00000564994 POGZQ7Z3K3 1410 aa17.58■□□□□ 0.41
VPS39-208ENST00000564994 YEATS2Q9ULM3 1422 aa17.57■□□□□ 0.4
VPS39-208ENST00000564994 EFCAB2Q5VUJ9 269 aa17.57■□□□□ 0.4
VPS39-208ENST00000564994 ARHGAP5Q13017 1502 aa17.57■□□□□ 0.4
VPS39-208ENST00000564994 ZFYVE16Q7Z3T8 1539 aa17.57■□□□□ 0.4
VPS39-208ENST00000564994 PREX2Q70Z35 1606 aa17.55■□□□□ 0.4
VPS39-208ENST00000564994 HECW2Q9P2P5 1572 aa17.55■□□□□ 0.4
VPS39-208ENST00000564994 MAGI2Q86UL8 1455 aa17.55■□□□□ 0.4
VPS39-208ENST00000564994 MADDQ8WXG6 1647 aa17.54■□□□□ 0.4
VPS39-208ENST00000564994 CDC42BPAQ5VT25 1732 aa17.54■□□□□ 0.4
VPS39-208ENST00000564994 ARID4BQ4LE39 1312 aaPredicted RBP17.53■□□□□ 0.4
VPS39-208ENST00000564994 PTPRMP28827 1452 aa17.53■□□□□ 0.4
VPS39-208ENST00000564994 CEP162Q5TB80 1403 aa17.5■□□□□ 0.39
VPS39-208ENST00000564994 KDM5CP41229 1560 aa17.49■□□□□ 0.39
VPS39-208ENST00000564994 ZNF518AQ6AHZ1 1483 aa17.49■□□□□ 0.39
VPS39-208ENST00000564994 RIMS1Q86UR5 1692 aaKnown RBP17.48■□□□□ 0.39
VPS39-208ENST00000564994 ABCC1P33527 1531 aa17.48■□□□□ 0.39
VPS39-208ENST00000564994 AFAP1Q8N556 730 aa17.48■□□□□ 0.39
VPS39-208ENST00000564994 ITSN2Q9NZM3 1697 aa17.48■□□□□ 0.39
VPS39-208ENST00000564994 ARHGEF12Q9NZN5 1544 aa17.47■□□□□ 0.39
VPS39-208ENST00000564994 ATP10AO60312 1499 aa17.46■□□□□ 0.39
VPS39-208ENST00000564994 GPATCH8Q9UKJ3 1502 aaKnown RBP17.44■□□□□ 0.38
VPS39-208ENST00000564994 C9orf84Q5VXU9 1444 aa17.44■□□□□ 0.38
VPS39-208ENST00000564994 TRAPPC8Q9Y2L5 1435 aa17.44■□□□□ 0.38
VPS39-208ENST00000564994 LOC105371045A0A1W2PR82 267 aa17.43■□□□□ 0.38
VPS39-208ENST00000564994 SAMD9LQ8IVG5 1584 aa17.43■□□□□ 0.38
VPS39-208ENST00000564994 DIP2CQ9Y2E4 1556 aa17.43■□□□□ 0.38
VPS39-208ENST00000564994 ABCA6Q8N139 1617 aa17.43■□□□□ 0.38
VPS39-208ENST00000564994 FER1L4A9Z1Z3 1794 aa17.43■□□□□ 0.38
VPS39-208ENST00000564994 MLECQ14165 292 aa17.42■□□□□ 0.38
VPS39-208ENST00000564994 MLH3Q9UHC1 1453 aa17.41■□□□□ 0.38
VPS39-208ENST00000564994 KIDINS220Q9ULH0 1771 aa17.4■□□□□ 0.38
VPS39-208ENST00000564994 MTUS2Q5JR59 1369 aa17.4■□□□□ 0.38
VPS39-208ENST00000564994 SYCP2Q9BX26 1530 aa17.38■□□□□ 0.37
VPS39-208ENST00000564994 REREQ9P2R6 1566 aa17.38■□□□□ 0.37
VPS39-208ENST00000564994 ZNF777Q9ULD5 760 aaPredicted RBP17.38■□□□□ 0.37
VPS39-208ENST00000564994 EHBP1L1Q8N3D4 1523 aa17.37■□□□□ 0.37
VPS39-208ENST00000564994 MYT1LQ9UL68 1186 aa17.37■□□□□ 0.37
VPS39-208ENST00000564994 TIAM1Q13009 1591 aa17.36■□□□□ 0.37
VPS39-208ENST00000564994 CCNB3Q8WWL7 1395 aa17.36■□□□□ 0.37
VPS39-208ENST00000564994 LMTK3Q96Q04 1460 aa17.35■□□□□ 0.37
VPS39-208ENST00000564994 PLPPR3Q6T4P5 718 aa17.34■□□□□ 0.37
VPS39-208ENST00000564994 CFDP1Q9UEE9 299 aaPredicted RBP17.34■□□□□ 0.37
VPS39-208ENST00000564994 HNRNPMP52272 730 aaKnown RBP eCLIP17.33■□□□□ 0.36
VPS39-208ENST00000564994 KIAA1107Q9UPP5 1409 aa17.32■□□□□ 0.36
VPS39-208ENST00000564994 AGLP35573 1532 aa17.31■□□□□ 0.36
VPS39-208ENST00000564994 PLEKHH2Q8IVE3 1493 aa17.31■□□□□ 0.36
VPS39-208ENST00000564994 VPS8Q8N3P4 1428 aa17.3■□□□□ 0.36
VPS39-208ENST00000564994 SUPT6HQ7KZ85 1726 aaKnown RBP17.3■□□□□ 0.36
VPS39-208ENST00000564994 ZNF644Q9H582 1327 aaPredicted RBP17.29■□□□□ 0.36
VPS39-208ENST00000564994 INO80Q9ULG1 1556 aaPredicted RBP17.29■□□□□ 0.36
VPS39-208ENST00000564994 ATP7AQ04656 1500 aa17.28■□□□□ 0.36
VPS39-208ENST00000564994 NCOA2Q15596 1464 aa17.28■□□□□ 0.36
VPS39-208ENST00000564994 SPAG9O60271 1321 aaKnown RBP17.27■□□□□ 0.36
VPS39-208ENST00000564994 CEBPAP49715 358 aaPredicted RBP17.27■□□□□ 0.36
VPS39-208ENST00000564994 MBD5Q9P267 1494 aa17.26■□□□□ 0.35
VPS39-208ENST00000564994 C3P01024 1663 aa17.25■□□□□ 0.35
VPS39-208ENST00000564994 PREX1Q8TCU6 1659 aa17.24■□□□□ 0.35
VPS39-208ENST00000564994 HSPA2P54652 639 aa17.24■□□□□ 0.35
VPS39-208ENST00000564994 LRRC9Q6ZRR7 1453 aa17.24■□□□□ 0.35
VPS39-208ENST00000564994 PLXNC1O60486 1568 aa17.23■□□□□ 0.35
VPS39-208ENST00000564994 SETD1BQ9UPS6 1966 aaKnown RBP17.22■□□□□ 0.35
VPS39-208ENST00000564994 A2MP01023 1474 aa17.21■□□□□ 0.35
VPS39-208ENST00000564994 MAP3K1Q13233 1512 aa17.21■□□□□ 0.34
VPS39-208ENST00000564994 ADGBQ8N7X0 1667 aa17.2■□□□□ 0.34
VPS39-208ENST00000564994 CAMSAP2Q08AD1 1489 aa17.2■□□□□ 0.34
VPS39-208ENST00000564994 ILDR1Q86SU0 546 aaPredicted RBP17.2■□□□□ 0.34
VPS39-208ENST00000564994 KANK4Q5T7N3 995 aaPredicted RBP17.19■□□□□ 0.34
VPS39-208ENST00000564994 MROH2AA6NES4 1674 aa17.17■□□□□ 0.34
VPS39-208ENST00000564994 RTEL1-TNFRSF6BF6WH68 1400 aa17.16■□□□□ 0.34
VPS39-208ENST00000564994 CNTLNQ9NXG0 1405 aa17.16■□□□□ 0.34
VPS39-208ENST00000564994 CCDC141Q6ZP82 1450 aa17.16■□□□□ 0.34
VPS39-208ENST00000564994 CLTCQ00610 1675 aaKnown RBP17.16■□□□□ 0.34
VPS39-208ENST00000564994 ESF1Q9H501 851 aaKnown RBP17.15■□□□□ 0.34
VPS39-208ENST00000564994 ARHGEF5Q12774 1597 aa17.15■□□□□ 0.34
VPS39-208ENST00000564994 UHRF1BP1Q6BDS2 1440 aa17.13■□□□□ 0.33
VPS39-208ENST00000564994 STRCQ7RTU9 1775 aa17.12■□□□□ 0.33
VPS39-208ENST00000564994 GGT6Q6P531 493 aa17.11■□□□□ 0.33
VPS39-208ENST00000564994 ZMYM3Q14202 1370 aa17.11■□□□□ 0.33
VPS39-208ENST00000564994 DHX29Q7Z478 1369 aaKnown RBP17.11■□□□□ 0.33
VPS39-208ENST00000564994 RSPH4AQ5TD94 716 aa17.1■□□□□ 0.33
VPS39-208ENST00000564994 MYOM3Q5VTT5 1437 aa17.09■□□□□ 0.33
VPS39-208ENST00000564994 NPATQ14207 1427 aa17.07■□□□□ 0.32
VPS39-208ENST00000564994 MIA2Q96PC5 1412 aa17.07■□□□□ 0.32
VPS39-208ENST00000564994 MAST1Q9Y2H9 1570 aa17.06■□□□□ 0.32
VPS39-208ENST00000564994 PTPRKQ15262 1439 aa17.04■□□□□ 0.32
VPS39-208ENST00000564994 KIF3BO15066 747 aa17.04■□□□□ 0.32
VPS39-208ENST00000564994 TSPY4P0CV99 314 aa17.04■□□□□ 0.32
VPS39-208ENST00000564994 TSPY10P0CW01 314 aa17.04■□□□□ 0.32
VPS39-208ENST00000564994 PPP6R1Q9UPN7 881 aa17.04■□□□□ 0.32
VPS39-208ENST00000564994 MYO3AQ8NEV4 1616 aa17.03■□□□□ 0.32
VPS39-208ENST00000564994 APLP2Q06481 763 aa17.02■□□□□ 0.32
VPS39-208ENST00000564994 ZNF142P52746 1687 aaPredicted RBP17.01■□□□□ 0.31
VPS39-208ENST00000564994 PTPN23Q9H3S7 1636 aa17.01■□□□□ 0.31
VPS39-208ENST00000564994 FBXO41Q8TF61 875 aa17■□□□□ 0.31
VPS39-208ENST00000564994 CROCC2H7BZ55 1655 aa17■□□□□ 0.31
VPS39-208ENST00000564994 KDM5DQ9BY66 1539 aa17■□□□□ 0.31
VPS39-208ENST00000564994 NCOA1Q15788 1441 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms