RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 MTUS2Q5JR59 1369 aa21.27■■□□□ 1
CLK3-216ENST00000564468 FBXO41Q8TF61 875 aa21.27■■□□□ 1
CLK3-216ENST00000564468 ARHGAP5Q13017 1502 aa21.27■■□□□ 1
CLK3-216ENST00000564468 VPS8Q8N3P4 1428 aa21.27■■□□□ 1
CLK3-216ENST00000564468 PREX2Q70Z35 1606 aa21.26■□□□□ 0.99
CLK3-216ENST00000564468 FRMPD1Q5SYB0 1578 aa21.25■□□□□ 0.99
CLK3-216ENST00000564468 CDC42BPAQ5VT25 1732 aa21.25■□□□□ 0.99
CLK3-216ENST00000564468 SCAPERQ9BY12 1400 aa21.23■□□□□ 0.99
CLK3-216ENST00000564468 EHBP1L1Q8N3D4 1523 aa21.22■□□□□ 0.99
CLK3-216ENST00000564468 ZMYM4Q5VZL5 1548 aa21.19■□□□□ 0.98
CLK3-216ENST00000564468 POGZQ7Z3K3 1410 aa21.18■□□□□ 0.98
CLK3-216ENST00000564468 MAGI2Q86UL8 1455 aa21.18■□□□□ 0.98
CLK3-216ENST00000564468 TIAM1Q13009 1591 aa21.18■□□□□ 0.98
CLK3-216ENST00000564468 ARID4BQ4LE39 1312 aaPredicted RBP21.17■□□□□ 0.98
CLK3-216ENST00000564468 CCNB3Q8WWL7 1395 aa21.16■□□□□ 0.98
CLK3-216ENST00000564468 GPATCH8Q9UKJ3 1502 aaKnown RBP21.15■□□□□ 0.98
CLK3-216ENST00000564468 PTPRMP28827 1452 aa21.15■□□□□ 0.98
CLK3-216ENST00000564468 ZNF518AQ6AHZ1 1483 aa21.15■□□□□ 0.98
CLK3-216ENST00000564468 SUPT6HQ7KZ85 1726 aaKnown RBP21.15■□□□□ 0.98
CLK3-216ENST00000564468 ARHGEF40Q8TER5 1519 aa21.14■□□□□ 0.98
CLK3-216ENST00000564468 ITSN2Q9NZM3 1697 aa21.14■□□□□ 0.97
CLK3-216ENST00000564468 MAP3K1Q13233 1512 aa21.14■□□□□ 0.97
CLK3-216ENST00000564468 ZFYVE16Q7Z3T8 1539 aa21.13■□□□□ 0.97
CLK3-216ENST00000564468 CFDP1Q9UEE9 299 aaPredicted RBP21.12■□□□□ 0.97
CLK3-216ENST00000564468 ABCC1P33527 1531 aa21.12■□□□□ 0.97
CLK3-216ENST00000564468 APLP2Q06481 763 aa21.1■□□□□ 0.97
CLK3-216ENST00000564468 ZNF777Q9ULD5 760 aaPredicted RBP21.1■□□□□ 0.97
CLK3-216ENST00000564468 PLEKHH2Q8IVE3 1493 aa21.09■□□□□ 0.97
CLK3-216ENST00000564468 KDM5CP41229 1560 aa21.09■□□□□ 0.97
CLK3-216ENST00000564468 LRRC9Q6ZRR7 1453 aa21.07■□□□□ 0.96
CLK3-216ENST00000564468 SAMD9LQ8IVG5 1584 aa21.07■□□□□ 0.96
CLK3-216ENST00000564468 AFAP1Q8N556 730 aa21.07■□□□□ 0.96
CLK3-216ENST00000564468 MYT1LQ9UL68 1186 aa21.07■□□□□ 0.96
CLK3-216ENST00000564468 ADAMTSL3P82987 1691 aa21.06■□□□□ 0.96
CLK3-216ENST00000564468 NCOA2Q15596 1464 aa21.06■□□□□ 0.96
CLK3-216ENST00000564468 YEATS2Q9ULM3 1422 aa21.05■□□□□ 0.96
CLK3-216ENST00000564468 KIAA1107Q9UPP5 1409 aa21.04■□□□□ 0.96
CLK3-216ENST00000564468 BCORL1Q5H9F3 1711 aa21.04■□□□□ 0.96
CLK3-216ENST00000564468 ARHGEF12Q9NZN5 1544 aa21.04■□□□□ 0.96
CLK3-216ENST00000564468 ATP10AO60312 1499 aa21.03■□□□□ 0.96
CLK3-216ENST00000564468 MLH3Q9UHC1 1453 aa21.03■□□□□ 0.96
CLK3-216ENST00000564468 TRAPPC8Q9Y2L5 1435 aa21.03■□□□□ 0.96
CLK3-216ENST00000564468 SYCP2Q9BX26 1530 aa21.02■□□□□ 0.96
CLK3-216ENST00000564468 C9orf84Q5VXU9 1444 aa21.01■□□□□ 0.95
CLK3-216ENST00000564468 HNRNPMP52272 730 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLK3-216ENST00000564468 KIDINS220Q9ULH0 1771 aa20.97■□□□□ 0.95
CLK3-216ENST00000564468 KANK4Q5T7N3 995 aaPredicted RBP20.97■□□□□ 0.95
CLK3-216ENST00000564468 DIP2CQ9Y2E4 1556 aa20.97■□□□□ 0.95
CLK3-216ENST00000564468 LMTK3Q96Q04 1460 aa20.96■□□□□ 0.95
CLK3-216ENST00000564468 SPAG9O60271 1321 aaKnown RBP20.96■□□□□ 0.95
CLK3-216ENST00000564468 REREQ9P2R6 1566 aa20.95■□□□□ 0.94
CLK3-216ENST00000564468 ABCA6Q8N139 1617 aa20.95■□□□□ 0.94
CLK3-216ENST00000564468 MADDQ8WXG6 1647 aa20.95■□□□□ 0.94
CLK3-216ENST00000564468 RSPH4AQ5TD94 716 aa20.94■□□□□ 0.94
CLK3-216ENST00000564468 SIGLEC1Q9BZZ2 1709 aa20.94■□□□□ 0.94
CLK3-216ENST00000564468 ZNF644Q9H582 1327 aaPredicted RBP20.93■□□□□ 0.94
CLK3-216ENST00000564468 PLPPR3Q6T4P5 718 aa20.92■□□□□ 0.94
CLK3-216ENST00000564468 CAMSAP2Q08AD1 1489 aa20.92■□□□□ 0.94
CLK3-216ENST00000564468 ATP7AQ04656 1500 aa20.91■□□□□ 0.94
CLK3-216ENST00000564468 MBD5Q9P267 1494 aa20.9■□□□□ 0.94
CLK3-216ENST00000564468 HSPA2P54652 639 aa20.9■□□□□ 0.94
CLK3-216ENST00000564468 FER1L4A9Z1Z3 1794 aa20.9■□□□□ 0.94
CLK3-216ENST00000564468 RIMS1Q86UR5 1692 aaKnown RBP20.89■□□□□ 0.94
CLK3-216ENST00000564468 INO80Q9ULG1 1556 aaPredicted RBP20.89■□□□□ 0.94
CLK3-216ENST00000564468 MYOM3Q5VTT5 1437 aa20.89■□□□□ 0.94
CLK3-216ENST00000564468 MIA2Q96PC5 1412 aa20.89■□□□□ 0.94
CLK3-216ENST00000564468 MLECQ14165 292 aa20.88■□□□□ 0.93
CLK3-216ENST00000564468 AGLP35573 1532 aa20.88■□□□□ 0.93
CLK3-216ENST00000564468 CCDC141Q6ZP82 1450 aa20.87■□□□□ 0.93
CLK3-216ENST00000564468 ARHGEF5Q12774 1597 aa20.86■□□□□ 0.93
CLK3-216ENST00000564468 CERKQ8TCT0 537 aa20.86■□□□□ 0.93
CLK3-216ENST00000564468 ADGBQ8N7X0 1667 aa20.86■□□□□ 0.93
CLK3-216ENST00000564468 RTEL1-TNFRSF6BF6WH68 1400 aa20.86■□□□□ 0.93
CLK3-216ENST00000564468 TSPY4P0CV99 314 aa20.83■□□□□ 0.93
CLK3-216ENST00000564468 TSPY10P0CW01 314 aa20.83■□□□□ 0.93
CLK3-216ENST00000564468 A2MP01023 1474 aa20.81■□□□□ 0.92
CLK3-216ENST00000564468 DMRT2Q9Y5R5 561 aa20.8■□□□□ 0.92
CLK3-216ENST00000564468 ESF1Q9H501 851 aaKnown RBP20.79■□□□□ 0.92
CLK3-216ENST00000564468 PLXNC1O60486 1568 aa20.78■□□□□ 0.92
CLK3-216ENST00000564468 PTPN23Q9H3S7 1636 aa20.78■□□□□ 0.92
CLK3-216ENST00000564468 SETD1BQ9UPS6 1966 aaKnown RBP20.76■□□□□ 0.91
CLK3-216ENST00000564468 FGD6Q6ZV73 1430 aa20.75■□□□□ 0.91
CLK3-216ENST00000564468 MAST1Q9Y2H9 1570 aa20.75■□□□□ 0.91
CLK3-216ENST00000564468 DHX29Q7Z478 1369 aaKnown RBP20.73■□□□□ 0.91
CLK3-216ENST00000564468 CNTLNQ9NXG0 1405 aa20.73■□□□□ 0.91
CLK3-216ENST00000564468 TCOF1Q13428 1488 aaKnown RBP20.71■□□□□ 0.91
CLK3-216ENST00000564468 PPP6R1Q9UPN7 881 aa20.7■□□□□ 0.9
CLK3-216ENST00000564468 CROCC2H7BZ55 1655 aa20.7■□□□□ 0.9
CLK3-216ENST00000564468 MROH2AA6NES4 1674 aa20.69■□□□□ 0.9
CLK3-216ENST00000564468 C3P01024 1663 aa20.68■□□□□ 0.9
CLK3-216ENST00000564468 GGT6Q6P531 493 aa20.68■□□□□ 0.9
CLK3-216ENST00000564468 DNMT1P26358 1616 aaKnown RBP20.67■□□□□ 0.9
CLK3-216ENST00000564468 SHANK2Q9UPX8 1470 aa20.67■□□□□ 0.9
CLK3-216ENST00000564468 CEBPAP49715 358 aaPredicted RBP20.66■□□□□ 0.9
CLK3-216ENST00000564468 CLTCQ00610 1675 aaKnown RBP20.64■□□□□ 0.9
CLK3-216ENST00000564468 ABCC5O15440 1437 aa20.64■□□□□ 0.89
CLK3-216ENST00000564468 DAPK1P53355 1430 aa20.64■□□□□ 0.89
CLK3-216ENST00000564468 KIF3BO15066 747 aa20.64■□□□□ 0.89
CLK3-216ENST00000564468 PREX1Q8TCU6 1659 aa20.64■□□□□ 0.89
CLK3-216ENST00000564468 UHRF1BP1Q6BDS2 1440 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms