RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 SUPT6HQ7KZ85 1726 aaKnown RBP20.76■□□□□ 0.91
SMPD3-205ENST00000563455 DENND4BO75064 1496 aaPredicted RBP20.75■□□□□ 0.91
SMPD3-205ENST00000563455 AKNAQ7Z591 1439 aa20.75■□□□□ 0.91
SMPD3-205ENST00000563455 FANCAO15360 1455 aa20.74■□□□□ 0.91
SMPD3-205ENST00000563455 NCOA2Q15596 1464 aa20.74■□□□□ 0.91
SMPD3-205ENST00000563455 MYOM3Q5VTT5 1437 aa20.73■□□□□ 0.91
SMPD3-205ENST00000563455 MIA2Q96PC5 1412 aa20.72■□□□□ 0.91
SMPD3-205ENST00000563455 EFCAB2Q5VUJ9 269 aa20.71■□□□□ 0.91
SMPD3-205ENST00000563455 FGD6Q6ZV73 1430 aa20.7■□□□□ 0.9
SMPD3-205ENST00000563455 TROQ12816 1431 aaPredicted RBP20.69■□□□□ 0.9
SMPD3-205ENST00000563455 CFAP74Q9C0B2 1584 aa20.68■□□□□ 0.9
SMPD3-205ENST00000563455 ACIN1Q9UKV3 1341 aaKnown RBP20.68■□□□□ 0.9
SMPD3-205ENST00000563455 PLCH2O75038 1416 aa20.68■□□□□ 0.9
SMPD3-205ENST00000563455 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.68■□□□□ 0.9
SMPD3-205ENST00000563455 LRRIQ1Q96JM4 1722 aa20.67■□□□□ 0.9
SMPD3-205ENST00000563455 CCER1Q8TC90 406 aaPredicted RBP20.67■□□□□ 0.9
SMPD3-205ENST00000563455 POGZQ7Z3K3 1410 aa20.67■□□□□ 0.9
SMPD3-205ENST00000563455 HECW2Q9P2P5 1572 aa20.65■□□□□ 0.9
SMPD3-205ENST00000563455 CDK13Q14004 1512 aaKnown RBP20.65■□□□□ 0.9
SMPD3-205ENST00000563455 MAGI2Q86UL8 1455 aa20.65■□□□□ 0.9
SMPD3-205ENST00000563455 CLSPNQ9HAW4 1339 aa20.65■□□□□ 0.9
SMPD3-205ENST00000563455 FAM50AQ14320 339 aaKnown RBP20.63■□□□□ 0.89
SMPD3-205ENST00000563455 PTPRMP28827 1452 aa20.62■□□□□ 0.89
SMPD3-205ENST00000563455 SCAPERQ9BY12 1400 aa20.62■□□□□ 0.89
SMPD3-205ENST00000563455 TCOF1Q13428 1488 aaKnown RBP20.6■□□□□ 0.89
SMPD3-205ENST00000563455 ILDR1Q86SU0 546 aaPredicted RBP20.59■□□□□ 0.89
SMPD3-205ENST00000563455 FRMPD1Q5SYB0 1578 aa20.57■□□□□ 0.88
SMPD3-205ENST00000563455 ADAMTSL3P82987 1691 aa20.57■□□□□ 0.88
SMPD3-205ENST00000563455 TTC37Q6PGP7 1564 aa20.56■□□□□ 0.88
SMPD3-205ENST00000563455 ZMYM4Q5VZL5 1548 aa20.55■□□□□ 0.88
SMPD3-205ENST00000563455 MYT1LQ9UL68 1186 aa20.55■□□□□ 0.88
SMPD3-205ENST00000563455 ZFYVE16Q7Z3T8 1539 aa20.54■□□□□ 0.88
SMPD3-205ENST00000563455 ARHGEF40Q8TER5 1519 aa20.54■□□□□ 0.88
SMPD3-205ENST00000563455 SETD5Q9C0A6 1442 aa20.53■□□□□ 0.88
SMPD3-205ENST00000563455 RICTORQ6R327 1708 aa20.53■□□□□ 0.88
SMPD3-205ENST00000563455 BCORL1Q5H9F3 1711 aa20.52■□□□□ 0.88
SMPD3-205ENST00000563455 PTPN23Q9H3S7 1636 aa20.51■□□□□ 0.87
SMPD3-205ENST00000563455 ATP10AO60312 1499 aa20.5■□□□□ 0.87
SMPD3-205ENST00000563455 MLECQ14165 292 aa20.5■□□□□ 0.87
SMPD3-205ENST00000563455 YEATS2Q9ULM3 1422 aa20.5■□□□□ 0.87
SMPD3-205ENST00000563455 KIF14Q15058 1648 aa20.49■□□□□ 0.87
SMPD3-205ENST00000563455 ZNF518AQ6AHZ1 1483 aa20.49■□□□□ 0.87
SMPD3-205ENST00000563455 ITSN2Q9NZM3 1697 aa20.48■□□□□ 0.87
SMPD3-205ENST00000563455 CFDP1Q9UEE9 299 aaPredicted RBP20.48■□□□□ 0.87
SMPD3-205ENST00000563455 ARHGAP5Q13017 1502 aa20.48■□□□□ 0.87
SMPD3-205ENST00000563455 AFAP1Q8N556 730 aa20.47■□□□□ 0.87
SMPD3-205ENST00000563455 ITGAEP38570 1179 aa20.46■□□□□ 0.87
SMPD3-205ENST00000563455 RSPH4AQ5TD94 716 aa20.46■□□□□ 0.87
SMPD3-205ENST00000563455 MADDQ8WXG6 1647 aa20.45■□□□□ 0.87
SMPD3-205ENST00000563455 HFM1A2PYH4 1435 aa20.45■□□□□ 0.86
SMPD3-205ENST00000563455 C9orf84Q5VXU9 1444 aa20.45■□□□□ 0.86
SMPD3-205ENST00000563455 GPATCH8Q9UKJ3 1502 aaKnown RBP20.45■□□□□ 0.86
SMPD3-205ENST00000563455 PLPPR3Q6T4P5 718 aa20.45■□□□□ 0.86
SMPD3-205ENST00000563455 MYO5CQ9NQX4 1742 aa20.44■□□□□ 0.86
SMPD3-205ENST00000563455 ESF1Q9H501 851 aaKnown RBP20.43■□□□□ 0.86
SMPD3-205ENST00000563455 ROCK1Q13464 1354 aa20.43■□□□□ 0.86
SMPD3-205ENST00000563455 RAB3GAP2Q9H2M9 1393 aa20.42■□□□□ 0.86
SMPD3-205ENST00000563455 FBXO41Q8TF61 875 aa20.39■□□□□ 0.85
SMPD3-205ENST00000563455 DHX57Q6P158 1386 aaKnown RBP20.38■□□□□ 0.85
SMPD3-205ENST00000563455 LMTK3Q96Q04 1460 aa20.37■□□□□ 0.85
SMPD3-205ENST00000563455 MLH3Q9UHC1 1453 aa20.37■□□□□ 0.85
SMPD3-205ENST00000563455 RIMS1Q86UR5 1692 aaKnown RBP20.37■□□□□ 0.85
SMPD3-205ENST00000563455 ZNF777Q9ULD5 760 aaPredicted RBP20.36■□□□□ 0.85
SMPD3-205ENST00000563455 DAPK1P53355 1430 aa20.35■□□□□ 0.85
SMPD3-205ENST00000563455 HSPA2P54652 639 aa20.34■□□□□ 0.85
SMPD3-205ENST00000563455 DMRT2Q9Y5R5 561 aa20.34■□□□□ 0.85
SMPD3-205ENST00000563455 PLEKHH2Q8IVE3 1493 aa20.34■□□□□ 0.85
SMPD3-205ENST00000563455 KDM5CP41229 1560 aa20.34■□□□□ 0.85
SMPD3-205ENST00000563455 DNMT1P26358 1616 aaKnown RBP20.33■□□□□ 0.84
SMPD3-205ENST00000563455 NAIPQ13075 1403 aa20.33■□□□□ 0.84
SMPD3-205ENST00000563455 ARHGEF12Q9NZN5 1544 aa20.32■□□□□ 0.84
SMPD3-205ENST00000563455 CAMSAP2Q08AD1 1489 aa20.32■□□□□ 0.84
SMPD3-205ENST00000563455 PTPRKQ15262 1439 aa20.31■□□□□ 0.84
SMPD3-205ENST00000563455 TIMELESSQ9UNS1 1208 aa20.31■□□□□ 0.84
SMPD3-205ENST00000563455 ABCC5O15440 1437 aa20.3■□□□□ 0.84
SMPD3-205ENST00000563455 SHANK2Q9UPX8 1470 aa20.3■□□□□ 0.84
SMPD3-205ENST00000563455 SPAG9O60271 1321 aaKnown RBP20.29■□□□□ 0.84
SMPD3-205ENST00000563455 TRAPPC8Q9Y2L5 1435 aa20.29■□□□□ 0.84
SMPD3-205ENST00000563455 CEBPAP49715 358 aaPredicted RBP20.29■□□□□ 0.84
SMPD3-205ENST00000563455 KIAA1107Q9UPP5 1409 aa20.28■□□□□ 0.84
SMPD3-205ENST00000563455 TSPY4P0CV99 314 aa20.28■□□□□ 0.84
SMPD3-205ENST00000563455 TSPY10P0CW01 314 aa20.28■□□□□ 0.84
SMPD3-205ENST00000563455 REREQ9P2R6 1566 aa20.28■□□□□ 0.84
SMPD3-205ENST00000563455 PREX2Q70Z35 1606 aa20.27■□□□□ 0.84
SMPD3-205ENST00000563455 ARHGEF5Q12774 1597 aa20.26■□□□□ 0.83
SMPD3-205ENST00000563455 ADGRL2O95490 1459 aa20.26■□□□□ 0.83
SMPD3-205ENST00000563455 ANKRD30AQ9BXX3 1397 aa20.26■□□□□ 0.83
SMPD3-205ENST00000563455 HNRNPMP52272 730 aaKnown RBP eCLIP20.26■□□□□ 0.83
SMPD3-205ENST00000563455 ABCC1P33527 1531 aa20.26■□□□□ 0.83
SMPD3-205ENST00000563455 CDC42BPAQ5VT25 1732 aa20.25■□□□□ 0.83
SMPD3-205ENST00000563455 CDC42BPBQ9Y5S2 1711 aa20.25■□□□□ 0.83
SMPD3-205ENST00000563455 AGLP35573 1532 aa20.25■□□□□ 0.83
SMPD3-205ENST00000563455 FER1L4A9Z1Z3 1794 aa20.25■□□□□ 0.83
SMPD3-205ENST00000563455 CNTLNQ9NXG0 1405 aa20.24■□□□□ 0.83
SMPD3-205ENST00000563455 UHRF1BP1Q6BDS2 1440 aa20.23■□□□□ 0.83
SMPD3-205ENST00000563455 DIP2CQ9Y2E4 1556 aa20.23■□□□□ 0.83
SMPD3-205ENST00000563455 ZNF644Q9H582 1327 aaPredicted RBP20.23■□□□□ 0.83
SMPD3-205ENST00000563455 GCC2Q8IWJ2 1684 aa20.22■□□□□ 0.83
SMPD3-205ENST00000563455 SIGLEC1Q9BZZ2 1709 aa20.22■□□□□ 0.83
SMPD3-205ENST00000563455 NCOA1Q15788 1441 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms