RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 KIF14Q15058 1648 aa27.75■■■□□ 2.03
HDGFL3-203ENST00000563404 MAGI2Q86UL8 1455 aa27.75■■■□□ 2.03
HDGFL3-203ENST00000563404 PCF11O94913 1555 aaKnown RBP27.71■■■□□ 2.03
HDGFL3-203ENST00000563404 LRRIQ1Q96JM4 1722 aa27.71■■■□□ 2.03
HDGFL3-203ENST00000563404 CDK11AQ9UQ88 783 aaPredicted RBP27.71■■■□□ 2.03
HDGFL3-203ENST00000563404 LMTK3Q96Q04 1460 aa27.7■■■□□ 2.03
HDGFL3-203ENST00000563404 MYO5CQ9NQX4 1742 aa27.7■■■□□ 2.03
HDGFL3-203ENST00000563404 TROQ12816 1431 aaPredicted RBP27.7■■■□□ 2.03
HDGFL3-203ENST00000563404 EFCAB2Q5VUJ9 269 aa27.69■■■□□ 2.02
HDGFL3-203ENST00000563404 MLECQ14165 292 aa27.64■■■□□ 2.02
HDGFL3-203ENST00000563404 PLPPR3Q6T4P5 718 aa27.62■■■□□ 2.01
HDGFL3-203ENST00000563404 ATP10AO60312 1499 aa27.62■■■□□ 2.01
HDGFL3-203ENST00000563404 CLIP1P30622 1438 aa27.61■■■□□ 2.01
HDGFL3-203ENST00000563404 ARHGAP5Q13017 1502 aa27.61■■■□□ 2.01
HDGFL3-203ENST00000563404 C9orf84Q5VXU9 1444 aa27.58■■■□□ 2.01
HDGFL3-203ENST00000563404 CASKIN1Q8WXD9 1431 aa27.58■■■□□ 2.01
HDGFL3-203ENST00000563404 AFAP1Q8N556 730 aa27.58■■■□□ 2.01
HDGFL3-203ENST00000563404 ZNF518AQ6AHZ1 1483 aa27.57■■■□□ 2
HDGFL3-203ENST00000563404 ARHGEF12Q9NZN5 1544 aa27.57■■■□□ 2
HDGFL3-203ENST00000563404 KDM5CP41229 1560 aa27.56■■■□□ 2
HDGFL3-203ENST00000563404 FER1L4A9Z1Z3 1794 aa27.56■■■□□ 2
HDGFL3-203ENST00000563404 HSPA2P54652 639 aa27.56■■■□□ 2
HDGFL3-203ENST00000563404 CDC42BPBQ9Y5S2 1711 aa27.55■■■□□ 2
HDGFL3-203ENST00000563404 CCDC18Q5T9S5 1454 aa27.51■■■□□ 2
HDGFL3-203ENST00000563404 FBXO41Q8TF61 875 aa27.5■■□□□ 1.99
HDGFL3-203ENST00000563404 PREX2Q70Z35 1606 aa27.49■■□□□ 1.99
HDGFL3-203ENST00000563404 DIP2CQ9Y2E4 1556 aa27.48■■□□□ 1.99
HDGFL3-203ENST00000563404 TRAPPC8Q9Y2L5 1435 aa27.47■■□□□ 1.99
HDGFL3-203ENST00000563404 ABCC1P33527 1531 aa27.46■■□□□ 1.99
HDGFL3-203ENST00000563404 CEBPAP49715 358 aaPredicted RBP27.45■■□□□ 1.98
HDGFL3-203ENST00000563404 FYCO1Q9BQS8 1478 aa27.44■■□□□ 1.98
HDGFL3-203ENST00000563404 MLH3Q9UHC1 1453 aa27.44■■□□□ 1.98
HDGFL3-203ENST00000563404 ABCA6Q8N139 1617 aa27.44■■□□□ 1.98
HDGFL3-203ENST00000563404 MYT1LQ9UL68 1186 aa27.43■■□□□ 1.98
HDGFL3-203ENST00000563404 REREQ9P2R6 1566 aa27.42■■□□□ 1.98
HDGFL3-203ENST00000563404 ITSN2Q9NZM3 1697 aa27.41■■□□□ 1.98
HDGFL3-203ENST00000563404 CDC42BPAQ5VT25 1732 aa27.41■■□□□ 1.98
HDGFL3-203ENST00000563404 PREX1Q8TCU6 1659 aa27.35■■□□□ 1.97
HDGFL3-203ENST00000563404 AGLP35573 1532 aa27.34■■□□□ 1.97
HDGFL3-203ENST00000563404 KIDINS220Q9ULH0 1771 aa27.34■■□□□ 1.97
HDGFL3-203ENST00000563404 GPATCH8Q9UKJ3 1502 aaKnown RBP27.33■■□□□ 1.97
HDGFL3-203ENST00000563404 SAMD9LQ8IVG5 1584 aa27.32■■□□□ 1.96
HDGFL3-203ENST00000563404 ZNF777Q9ULD5 760 aaPredicted RBP27.3■■□□□ 1.96
HDGFL3-203ENST00000563404 SYCP2Q9BX26 1530 aa27.27■■□□□ 1.96
HDGFL3-203ENST00000563404 C3P01024 1663 aa27.26■■□□□ 1.95
HDGFL3-203ENST00000563404 HNRNPMP52272 730 aaKnown RBP eCLIP27.25■■□□□ 1.95
HDGFL3-203ENST00000563404 UHRF1BP1Q6BDS2 1440 aa27.24■■□□□ 1.95
HDGFL3-203ENST00000563404 STRCQ7RTU9 1775 aa27.22■■□□□ 1.95
HDGFL3-203ENST00000563404 CERKQ8TCT0 537 aa27.22■■□□□ 1.95
HDGFL3-203ENST00000563404 SETD1BQ9UPS6 1966 aaKnown RBP27.21■■□□□ 1.95
HDGFL3-203ENST00000563404 SPAG9O60271 1321 aaKnown RBP27.2■■□□□ 1.95
HDGFL3-203ENST00000563404 CFDP1Q9UEE9 299 aaPredicted RBP27.2■■□□□ 1.94
HDGFL3-203ENST00000563404 KIAA1107Q9UPP5 1409 aa27.19■■□□□ 1.94
HDGFL3-203ENST00000563404 CCNB3Q8WWL7 1395 aa27.19■■□□□ 1.94
HDGFL3-203ENST00000563404 ESF1Q9H501 851 aaKnown RBP27.18■■□□□ 1.94
HDGFL3-203ENST00000563404 MTUS2Q5JR59 1369 aa27.17■■□□□ 1.94
HDGFL3-203ENST00000563404 ATP7AQ04656 1500 aa27.16■■□□□ 1.94
HDGFL3-203ENST00000563404 CNTLNQ9NXG0 1405 aa27.16■■□□□ 1.94
HDGFL3-203ENST00000563404 INO80Q9ULG1 1556 aaPredicted RBP27.14■■□□□ 1.94
HDGFL3-203ENST00000563404 PLEKHH2Q8IVE3 1493 aa27.14■■□□□ 1.94
HDGFL3-203ENST00000563404 SUPT6HQ7KZ85 1726 aaKnown RBP27.13■■□□□ 1.93
HDGFL3-203ENST00000563404 TIAM1Q13009 1591 aa27.12■■□□□ 1.93
HDGFL3-203ENST00000563404 ZNF644Q9H582 1327 aaPredicted RBP27.12■■□□□ 1.93
HDGFL3-203ENST00000563404 PLXNC1O60486 1568 aa27.11■■□□□ 1.93
HDGFL3-203ENST00000563404 DMRT2Q9Y5R5 561 aa27.11■■□□□ 1.93
HDGFL3-203ENST00000563404 CEP162Q5TB80 1403 aa27.09■■□□□ 1.93
HDGFL3-203ENST00000563404 A2MP01023 1474 aa27.09■■□□□ 1.93
HDGFL3-203ENST00000563404 EHBP1L1Q8N3D4 1523 aa27.08■■□□□ 1.93
HDGFL3-203ENST00000563404 ZMYM3Q14202 1370 aa27.08■■□□□ 1.93
HDGFL3-203ENST00000563404 MROH2AA6NES4 1674 aa27.08■■□□□ 1.92
HDGFL3-203ENST00000563404 MBD5Q9P267 1494 aa27.06■■□□□ 1.92
HDGFL3-203ENST00000563404 PTPRTO14522 1441 aa27.06■■□□□ 1.92
HDGFL3-203ENST00000563404 NPATQ14207 1427 aa27.05■■□□□ 1.92
HDGFL3-203ENST00000563404 CLTCQ00610 1675 aaKnown RBP27.02■■□□□ 1.92
HDGFL3-203ENST00000563404 NCOA1Q15788 1441 aa27.02■■□□□ 1.92
HDGFL3-203ENST00000563404 GGT6Q6P531 493 aa27■■□□□ 1.91
HDGFL3-203ENST00000563404 ADGBQ8N7X0 1667 aa26.98■■□□□ 1.91
HDGFL3-203ENST00000563404 PTPRKQ15262 1439 aa26.97■■□□□ 1.91
HDGFL3-203ENST00000563404 CAMSAP1Q5T5Y3 1602 aa26.97■■□□□ 1.91
HDGFL3-203ENST00000563404 RTEL1-TNFRSF6BF6WH68 1400 aa26.95■■□□□ 1.9
HDGFL3-203ENST00000563404 LTBP4Q8N2S1 1624 aa26.94■■□□□ 1.9
HDGFL3-203ENST00000563404 NCOA2Q15596 1464 aa26.94■■□□□ 1.9
HDGFL3-203ENST00000563404 MYO3AQ8NEV4 1616 aa26.91■■□□□ 1.9
HDGFL3-203ENST00000563404 DHX29Q7Z478 1369 aaKnown RBP26.91■■□□□ 1.9
HDGFL3-203ENST00000563404 NCKAP5LQ9HCH0 1330 aa26.9■■□□□ 1.9
HDGFL3-203ENST00000563404 CAMSAP2Q08AD1 1489 aa26.9■■□□□ 1.9
HDGFL3-203ENST00000563404 PPP6R1Q9UPN7 881 aa26.9■■□□□ 1.9
HDGFL3-203ENST00000563404 ZNF142P52746 1687 aaPredicted RBP26.89■■□□□ 1.89
HDGFL3-203ENST00000563404 CCDC141Q6ZP82 1450 aa26.88■■□□□ 1.89
HDGFL3-203ENST00000563404 CEP170BQ9Y4F5 1589 aaPredicted RBP26.87■■□□□ 1.89
HDGFL3-203ENST00000563404 LOC105371045A0A1W2PR82 267 aa26.85■■□□□ 1.89
HDGFL3-203ENST00000563404 PLA2R1Q13018 1463 aa26.83■■□□□ 1.89
HDGFL3-203ENST00000563404 KIF3BO15066 747 aa26.82■■□□□ 1.88
HDGFL3-203ENST00000563404 TCOF1Q13428 1488 aaKnown RBP26.81■■□□□ 1.88
HDGFL3-203ENST00000563404 RSPH4AQ5TD94 716 aa26.81■■□□□ 1.88
HDGFL3-203ENST00000563404 VPS8Q8N3P4 1428 aa26.81■■□□□ 1.88
HDGFL3-203ENST00000563404 LRRC9Q6ZRR7 1453 aa26.8■■□□□ 1.88
HDGFL3-203ENST00000563404 PKD2Q13563 968 aa26.79■■□□□ 1.88
HDGFL3-203ENST00000563404 ZNF335Q9H4Z2 1342 aaPredicted RBP26.79■■□□□ 1.88
HDGFL3-203ENST00000563404 ARHGEF5Q12774 1597 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms