RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 GPATCH8Q9UKJ3 1502 aaKnown RBP29.2■■■□□ 2.26
RAB40C-207ENST00000563109 FANCAO15360 1455 aa29.18■■■□□ 2.26
RAB40C-207ENST00000563109 NEO1Q92859 1461 aa29.17■■■□□ 2.26
RAB40C-207ENST00000563109 EFCAB2Q5VUJ9 269 aa29.13■■■□□ 2.25
RAB40C-207ENST00000563109 PPARGC1BQ86YN6 1023 aaKnown RBP29.12■■■□□ 2.25
RAB40C-207ENST00000563109 PHLDB1Q86UU1 1377 aa29.12■■■□□ 2.25
RAB40C-207ENST00000563109 MYOM3Q5VTT5 1437 aa29.11■■■□□ 2.25
RAB40C-207ENST00000563109 CFDP1Q9UEE9 299 aaPredicted RBP29.1■■■□□ 2.25
RAB40C-207ENST00000563109 AKNAQ7Z591 1439 aa29.08■■■□□ 2.25
RAB40C-207ENST00000563109 KDM6BO15054 1643 aa29.07■■■□□ 2.24
RAB40C-207ENST00000563109 SAMD9LQ8IVG5 1584 aa29.05■■■□□ 2.24
RAB40C-207ENST00000563109 ADGRL1O94910 1474 aa29.05■■■□□ 2.24
RAB40C-207ENST00000563109 MIA2Q96PC5 1412 aa29.04■■■□□ 2.24
RAB40C-207ENST00000563109 ZNF777Q9ULD5 760 aaPredicted RBP29.04■■■□□ 2.24
RAB40C-207ENST00000563109 ABCC1P33527 1531 aa29.04■■■□□ 2.24
RAB40C-207ENST00000563109 PLEKHH2Q8IVE3 1493 aa29.03■■■□□ 2.24
RAB40C-207ENST00000563109 CAMSAP2Q08AD1 1489 aa29■■■□□ 2.23
RAB40C-207ENST00000563109 FGD6Q6ZV73 1430 aa29■■■□□ 2.23
RAB40C-207ENST00000563109 PTPN23Q9H3S7 1636 aa28.98■■■□□ 2.23
RAB40C-207ENST00000563109 SYCP2Q9BX26 1530 aa28.97■■■□□ 2.23
RAB40C-207ENST00000563109 DENND4BO75064 1496 aaPredicted RBP28.97■■■□□ 2.23
RAB40C-207ENST00000563109 SCAPERQ9BY12 1400 aa28.96■■■□□ 2.23
RAB40C-207ENST00000563109 RICTORQ6R327 1708 aa28.94■■■□□ 2.22
RAB40C-207ENST00000563109 KIAA1107Q9UPP5 1409 aa28.93■■■□□ 2.22
RAB40C-207ENST00000563109 POGZQ7Z3K3 1410 aa28.92■■■□□ 2.22
RAB40C-207ENST00000563109 ZNF644Q9H582 1327 aaPredicted RBP28.91■■■□□ 2.22
RAB40C-207ENST00000563109 TCOF1Q13428 1488 aaKnown RBP28.91■■■□□ 2.22
RAB40C-207ENST00000563109 COL17A1Q9UMD9 1497 aaPredicted RBP28.91■■■□□ 2.22
RAB40C-207ENST00000563109 FRMPD1Q5SYB0 1578 aa28.9■■■□□ 2.22
RAB40C-207ENST00000563109 ZNF518AQ6AHZ1 1483 aa28.9■■■□□ 2.22
RAB40C-207ENST00000563109 ARHGEF12Q9NZN5 1544 aa28.89■■■□□ 2.21
RAB40C-207ENST00000563109 ARHGEF5Q12774 1597 aa28.86■■■□□ 2.21
RAB40C-207ENST00000563109 RAPGEF3O95398 923 aa28.84■■■□□ 2.21
RAB40C-207ENST00000563109 HNRNPMP52272 730 aaKnown RBP eCLIP28.84■■■□□ 2.21
RAB40C-207ENST00000563109 TRAPPC8Q9Y2L5 1435 aa28.84■■■□□ 2.21
RAB40C-207ENST00000563109 KDM5CP41229 1560 aa28.84■■■□□ 2.21
RAB40C-207ENST00000563109 CCDC141Q6ZP82 1450 aa28.83■■■□□ 2.21
RAB40C-207ENST00000563109 MBD5Q9P267 1494 aa28.83■■■□□ 2.21
RAB40C-207ENST00000563109 ZMYM4Q5VZL5 1548 aa28.83■■■□□ 2.21
RAB40C-207ENST00000563109 RRBP1Q9P2E9 1410 aaKnown RBP28.81■■■□□ 2.2
RAB40C-207ENST00000563109 FAM50AQ14320 339 aaKnown RBP28.81■■■□□ 2.2
RAB40C-207ENST00000563109 HECW2Q9P2P5 1572 aa28.8■■■□□ 2.2
RAB40C-207ENST00000563109 RSPH4AQ5TD94 716 aa28.79■■■□□ 2.2
RAB40C-207ENST00000563109 DNMT1P26358 1616 aaKnown RBP28.79■■■□□ 2.2
RAB40C-207ENST00000563109 CROCC2H7BZ55 1655 aa28.78■■■□□ 2.2
RAB40C-207ENST00000563109 AFAP1Q8N556 730 aa28.77■■■□□ 2.2
RAB40C-207ENST00000563109 MAGI2Q86UL8 1455 aa28.75■■■□□ 2.19
RAB40C-207ENST00000563109 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.75■■■□□ 2.191e-6■■■□□ 17.4
RAB40C-207ENST00000563109 ZFYVE16Q7Z3T8 1539 aa28.74■■■□□ 2.19
RAB40C-207ENST00000563109 MYT1LQ9UL68 1186 aa28.73■■■□□ 2.19
RAB40C-207ENST00000563109 INO80Q9ULG1 1556 aaPredicted RBP28.73■■■□□ 2.19
RAB40C-207ENST00000563109 SPAG9O60271 1321 aaKnown RBP28.72■■■□□ 2.19
RAB40C-207ENST00000563109 DAPK1P53355 1430 aa28.72■■■□□ 2.19
RAB40C-207ENST00000563109 ARHGEF40Q8TER5 1519 aa28.72■■■□□ 2.19
RAB40C-207ENST00000563109 MLH3Q9UHC1 1453 aa28.72■■■□□ 2.19
RAB40C-207ENST00000563109 ATP7AQ04656 1500 aa28.71■■■□□ 2.19
RAB40C-207ENST00000563109 SHANK2Q9UPX8 1470 aa28.71■■■□□ 2.19
RAB40C-207ENST00000563109 MAST1Q9Y2H9 1570 aa28.7■■■□□ 2.18
RAB40C-207ENST00000563109 TSPY4P0CV99 314 aa28.69■■■□□ 2.18
RAB40C-207ENST00000563109 TSPY10P0CW01 314 aa28.69■■■□□ 2.18
RAB40C-207ENST00000563109 KIDINS220Q9ULH0 1771 aa28.69■■■□□ 2.18
RAB40C-207ENST00000563109 ABCC5O15440 1437 aa28.69■■■□□ 2.18
RAB40C-207ENST00000563109 C9orf84Q5VXU9 1444 aa28.67■■■□□ 2.18
RAB40C-207ENST00000563109 RTEL1-TNFRSF6BF6WH68 1400 aa28.66■■■□□ 2.18
RAB40C-207ENST00000563109 ABCA6Q8N139 1617 aa28.65■■■□□ 2.18
RAB40C-207ENST00000563109 ADGBQ8N7X0 1667 aa28.64■■■□□ 2.18
RAB40C-207ENST00000563109 DIP2CQ9Y2E4 1556 aa28.63■■■□□ 2.17
RAB40C-207ENST00000563109 YEATS2Q9ULM3 1422 aa28.63■■■□□ 2.17
RAB40C-207ENST00000563109 PLXNC1O60486 1568 aa28.61■■■□□ 2.17
RAB40C-207ENST00000563109 ITGAEP38570 1179 aa28.58■■■□□ 2.17
RAB40C-207ENST00000563109 ATP10AO60312 1499 aa28.57■■■□□ 2.16
RAB40C-207ENST00000563109 REREQ9P2R6 1566 aa28.54■■■□□ 2.16
RAB40C-207ENST00000563109 ADGRL2O95490 1459 aa28.54■■■□□ 2.16
RAB40C-207ENST00000563109 ANKRD30AQ9BXX3 1397 aa28.53■■■□□ 2.16
RAB40C-207ENST00000563109 CHIC2Q9UKJ5 165 aa28.52■■■□□ 2.16
RAB40C-207ENST00000563109 PTPRKQ15262 1439 aa28.52■■■□□ 2.16
RAB40C-207ENST00000563109 A2MP01023 1474 aa28.5■■■□□ 2.15
RAB40C-207ENST00000563109 ROCK1Q13464 1354 aa28.48■■■□□ 2.15
RAB40C-207ENST00000563109 KIF15Q9NS87 1388 aa28.48■■■□□ 2.15
RAB40C-207ENST00000563109 DUOX2Q9NRD8 1548 aa28.47■■■□□ 2.15
RAB40C-207ENST00000563109 NCOA1Q15788 1441 aa28.46■■■□□ 2.15
RAB40C-207ENST00000563109 SIGLEC1Q9BZZ2 1709 aa28.43■■■□□ 2.14
RAB40C-207ENST00000563109 RRP7BPQ9NSQ0 103 aa28.43■■■□□ 2.14
RAB40C-207ENST00000563109 DHX29Q7Z478 1369 aaKnown RBP28.42■■■□□ 2.14
RAB40C-207ENST00000563109 AGLP35573 1532 aa28.42■■■□□ 2.14
RAB40C-207ENST00000563109 EIF2AK4Q9P2K8 1649 aaKnown RBP28.41■■■□□ 2.14
RAB40C-207ENST00000563109 ARID4BQ4LE39 1312 aaPredicted RBP28.41■■■□□ 2.14
RAB40C-207ENST00000563109 GCC2Q8IWJ2 1684 aa28.39■■■□□ 2.14
RAB40C-207ENST00000563109 ERBINQ96RT1 1412 aa28.39■■■□□ 2.14
RAB40C-207ENST00000563109 BCORL1Q5H9F3 1711 aa28.38■■■□□ 2.13
RAB40C-207ENST00000563109 ANKRD50Q9ULJ7 1429 aa28.33■■■□□ 2.13
RAB40C-207ENST00000563109 TRIM26Q12899 539 aaPredicted RBP28.32■■■□□ 2.12
RAB40C-207ENST00000563109 HFM1A2PYH4 1435 aa28.32■■■□□ 2.12
RAB40C-207ENST00000563109 RNF17Q9BXT8 1623 aaKnown RBP28.29■■■□□ 2.12
RAB40C-207ENST00000563109 NAIPQ13075 1403 aa28.28■■■□□ 2.12
RAB40C-207ENST00000563109 KIF3BO15066 747 aa28.28■■■□□ 2.12
RAB40C-207ENST00000563109 MLECQ14165 292 aa28.25■■■□□ 2.11
RAB40C-207ENST00000563109 DEPDC5O75140 1603 aa28.25■■■□□ 2.11
RAB40C-207ENST00000563109 FER1L4A9Z1Z3 1794 aa28.24■■■□□ 2.11
RAB40C-207ENST00000563109 ADAMTSL3P82987 1691 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms