RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 PPP4R2Q9NY27 417 aa25.59■■□□□ 1.69
RAB40C-206ENST00000561781 ABCA8O94911 1581 aa25.58■■□□□ 1.69
RAB40C-206ENST00000561781 FMN1Q68DA7 1419 aa25.58■■□□□ 1.69
RAB40C-206ENST00000561781 RAPGEF6Q8TEU7 1601 aa25.56■■□□□ 1.68
RAB40C-206ENST00000561781 ABCC2Q92887 1545 aa25.55■■□□□ 1.68
RAB40C-206ENST00000561781 NUP153P49790 1475 aaKnown RBP25.55■■□□□ 1.68
RAB40C-206ENST00000561781 C11orf95C9JLR9 678 aaPredicted RBP25.54■■□□□ 1.68
RAB40C-206ENST00000561781 CDK13Q14004 1512 aaKnown RBP25.52■■□□□ 1.68
RAB40C-206ENST00000561781 WASHC2AQ641Q2 1341 aa25.5■■□□□ 1.67
RAB40C-206ENST00000561781 RAB3GAP2Q9H2M9 1393 aa25.48■■□□□ 1.67
RAB40C-206ENST00000561781 IPO9Q96P70 1041 aaKnown RBP25.48■■□□□ 1.67
RAB40C-206ENST00000561781 CCNB3Q8WWL7 1395 aa25.48■■□□□ 1.67
RAB40C-206ENST00000561781 LRRIQ1Q96JM4 1722 aa25.47■■□□□ 1.67
RAB40C-206ENST00000561781 HIRIP3Q9BW71 556 aaPredicted RBP25.47■■□□□ 1.67
RAB40C-206ENST00000561781 CASKIN1Q8WXD9 1431 aa25.46■■□□□ 1.67
RAB40C-206ENST00000561781 ANP32AP39687 249 aaKnown RBP25.45■■□□□ 1.67
RAB40C-206ENST00000561781 UHRF1BP1LA0JNW5 1464 aa25.45■■□□□ 1.66
RAB40C-206ENST00000561781 ATP10BO94823 1461 aa25.45■■□□□ 1.66
RAB40C-206ENST00000561781 ZCCHC11Q5TAX3 1644 aaKnown RBP25.43■■□□□ 1.66
RAB40C-206ENST00000561781 ZBTB47Q9UFB7 747 aaPredicted RBP25.43■■□□□ 1.66
RAB40C-206ENST00000561781 HECW1Q76N89 1606 aa25.42■■□□□ 1.66
RAB40C-206ENST00000561781 FYCO1Q9BQS8 1478 aa25.42■■□□□ 1.66
RAB40C-206ENST00000561781 EPRSP07814 1512 aaKnown RBP25.42■■□□□ 1.66
RAB40C-206ENST00000561781 KDM5BQ9UGL1 1544 aa25.41■■□□□ 1.66
RAB40C-206ENST00000561781 NPM1P06748 294 aaKnown RBP eCLIP25.41■■□□□ 1.66
RAB40C-206ENST00000561781 HNRNPUQ00839 825 aaKnown RBP eCLIP25.41■■□□□ 1.66
RAB40C-206ENST00000561781 SIN3AQ96ST3 1273 aa25.41■■□□□ 1.66
RAB40C-206ENST00000561781 USP35Q9P2H5 1018 aa25.41■■□□□ 1.66
RAB40C-206ENST00000561781 WASHC2CQ9Y4E1 1318 aa25.39■■□□□ 1.66
RAB40C-206ENST00000561781 ASXL2Q76L83 1435 aa25.35■■□□□ 1.65
RAB40C-206ENST00000561781 MAGI3Q5TCQ9 1506 aa25.32■■□□□ 1.64
RAB40C-206ENST00000561781 RSPH6AQ9H0K4 717 aa25.31■■□□□ 1.64
RAB40C-206ENST00000561781 GLIPR1L2Q4G1C9 344 aa25.3■■□□□ 1.64
RAB40C-206ENST00000561781 B4GALNT3Q6L9W6 998 aa25.29■■□□□ 1.64
RAB40C-206ENST00000561781 SETD5Q9C0A6 1442 aa25.27■■□□□ 1.64
RAB40C-206ENST00000561781 SLC24A1O60721 1099 aa25.26■■□□□ 1.63
RAB40C-206ENST00000561781 TIMELESSQ9UNS1 1208 aa25.26■■□□□ 1.63
RAB40C-206ENST00000561781 CCDC18Q5T9S5 1454 aa25.25■■□□□ 1.63
RAB40C-206ENST00000561781 WDR7Q9Y4E6 1490 aa25.24■■□□□ 1.63
RAB40C-206ENST00000561781 TRHP20396 242 aaPredicted RBP25.24■■□□□ 1.63
RAB40C-206ENST00000561781 TIAM1Q13009 1591 aa25.24■■□□□ 1.63
RAB40C-206ENST00000561781 PLEKHD1A6NEE1 506 aa25.23■■□□□ 1.63
RAB40C-206ENST00000561781 MTUS2Q5JR59 1369 aa25.19■■□□□ 1.62
RAB40C-206ENST00000561781 NEFMP07197 916 aa25.19■■□□□ 1.62
RAB40C-206ENST00000561781 CFAP43Q8NDM7 1665 aa25.19■■□□□ 1.62
RAB40C-206ENST00000561781 KIF14Q15058 1648 aa25.18■■□□□ 1.62
RAB40C-206ENST00000561781 FAM69CQ0P6D2 419 aa25.18■■□□□ 1.62
RAB40C-206ENST00000561781 BRPF3Q9ULD4 1205 aa25.15■■□□□ 1.62
RAB40C-206ENST00000561781 TROQ12816 1431 aaPredicted RBP25.15■■□□□ 1.62
RAB40C-206ENST00000561781 LRRC9Q6ZRR7 1453 aa25.14■■□□□ 1.61
RAB40C-206ENST00000561781 DIP2BQ9P265 1576 aa25.13■■□□□ 1.61
RAB40C-206ENST00000561781 DAXXQ9UER7 740 aaPredicted RBP25.13■■□□□ 1.61
RAB40C-206ENST00000561781 ABCC10Q5T3U5 1492 aa25.12■■□□□ 1.61
RAB40C-206ENST00000561781 PPM1GO15355 546 aaPredicted RBP25.12■■□□□ 1.61
RAB40C-206ENST00000561781 PODXL2Q9NZ53 605 aa25.11■■□□□ 1.61
RAB40C-206ENST00000561781 TTC37Q6PGP7 1564 aa25.09■■□□□ 1.61
RAB40C-206ENST00000561781 KIF13AQ9H1H9 1805 aa25.08■■□□□ 1.6
RAB40C-206ENST00000561781 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.07■■□□□ 1.6
RAB40C-206ENST00000561781 EHBP1L1Q8N3D4 1523 aa25.06■■□□□ 1.6
RAB40C-206ENST00000561781 GSE1Q14687 1217 aa25.05■■□□□ 1.6
RAB40C-206ENST00000561781 MAP3K1Q13233 1512 aa25.03■■□□□ 1.6
RAB40C-206ENST00000561781 ZMYND15Q9H091 742 aa25.03■■□□□ 1.6
RAB40C-206ENST00000561781 TSPOAP1O95153 1857 aa25.03■■□□□ 1.6
RAB40C-206ENST00000561781 FAM43AQ8N2R8 423 aa25.02■■□□□ 1.6
RAB40C-206ENST00000561781 NCOA2Q15596 1464 aa25.01■■□□□ 1.59
RAB40C-206ENST00000561781 LAS1LQ9Y4W2 734 aaKnown RBP24.99■■□□□ 1.59
RAB40C-206ENST00000561781 TONSLQ96HA7 1378 aa24.99■■□□□ 1.59
RAB40C-206ENST00000561781 PLEKHG5O94827 1062 aa24.98■■□□□ 1.59
RAB40C-206ENST00000561781 CD109Q6YHK3 1445 aa24.98■■□□□ 1.59
RAB40C-206ENST00000561781 PHLDB1Q86UU1 1377 aa24.97■■□□□ 1.59
RAB40C-206ENST00000561781 ABCA9Q8IUA7 1624 aa24.97■■□□□ 1.59
RAB40C-206ENST00000561781 CCDC184Q52MB2 194 aa24.96■■□□□ 1.59
RAB40C-206ENST00000561781 FAM50AQ14320 339 aaKnown RBP24.95■■□□□ 1.59
RAB40C-206ENST00000561781 SUPT6HQ7KZ85 1726 aaKnown RBP24.95■■□□□ 1.58
RAB40C-206ENST00000561781 VSIG10Q8N0Z9 540 aa24.95■■□□□ 1.58
RAB40C-206ENST00000561781 MAP3K4Q9Y6R4 1608 aa24.94■■□□□ 1.58
RAB40C-206ENST00000561781 ZNF777Q9ULD5 760 aaPredicted RBP24.93■■□□□ 1.58
RAB40C-206ENST00000561781 GLI2P10070 1586 aa24.93■■□□□ 1.58
RAB40C-206ENST00000561781 ZBED9Q6R2W3 1325 aa24.93■■□□□ 1.58
RAB40C-206ENST00000561781 ZNF644Q9H582 1327 aaPredicted RBP24.91■■□□□ 1.58
RAB40C-206ENST00000561781 GPATCH8Q9UKJ3 1502 aaKnown RBP24.91■■□□□ 1.58
RAB40C-206ENST00000561781 PPRC1Q5VV67 1664 aaKnown RBP24.9■■□□□ 1.58
RAB40C-206ENST00000561781 FAM9BQ8IZU0 186 aa24.9■■□□□ 1.58
RAB40C-206ENST00000561781 CDC42BPAQ5VT25 1732 aa24.89■■□□□ 1.57
RAB40C-206ENST00000561781 ARHGAP5Q13017 1502 aa24.87■■□□□ 1.57
RAB40C-206ENST00000561781 CFDP1Q9UEE9 299 aaPredicted RBP24.86■■□□□ 1.57
RAB40C-206ENST00000561781 MYO5CQ9NQX4 1742 aa24.86■■□□□ 1.57
RAB40C-206ENST00000561781 CDC42BPBQ9Y5S2 1711 aa24.86■■□□□ 1.57
RAB40C-206ENST00000561781 PLCH2O75038 1416 aa24.85■■□□□ 1.57
RAB40C-206ENST00000561781 FANCAO15360 1455 aa24.84■■□□□ 1.57
RAB40C-206ENST00000561781 PREX2Q70Z35 1606 aa24.83■■□□□ 1.57
RAB40C-206ENST00000561781 MYOM3Q5VTT5 1437 aa24.81■■□□□ 1.56
RAB40C-206ENST00000561781 NPM2Q86SE8 214 aaKnown RBP24.81■■□□□ 1.56
RAB40C-206ENST00000561781 FRAT1Q92837 279 aaPredicted RBP24.8■■□□□ 1.56
RAB40C-206ENST00000561781 AKNAQ7Z591 1439 aa24.8■■□□□ 1.56
RAB40C-206ENST00000561781 MRS2Q9HD23 443 aa24.79■■□□□ 1.56
RAB40C-206ENST00000561781 CNTLNQ9NXG0 1405 aa24.77■■□□□ 1.56
RAB40C-206ENST00000561781 COL17A1Q9UMD9 1497 aaPredicted RBP24.76■■□□□ 1.55
RAB40C-206ENST00000561781 EFCAB2Q5VUJ9 269 aa24.76■■□□□ 1.55
RAB40C-206ENST00000561781 SAMD9LQ8IVG5 1584 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms