RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 LRRIQ1Q96JM4 1722 aa31.38■■■□□ 2.61
VPS35-202ENST00000561713 PLCH2O75038 1416 aa31.37■■■□□ 2.61
VPS35-202ENST00000561713 MAGI2Q86UL8 1455 aa31.36■■■□□ 2.61
VPS35-202ENST00000561713 SCAPERQ9BY12 1400 aa31.36■■■□□ 2.61
VPS35-202ENST00000561713 HSPA2P54652 639 aa31.35■■■□□ 2.61
VPS35-202ENST00000561713 ATP1B4Q9UN42 357 aaPredicted RBP31.35■■■□□ 2.61
VPS35-202ENST00000561713 MLECQ14165 292 aa31.34■■■□□ 2.61
VPS35-202ENST00000561713 FMN1Q68DA7 1419 aa31.31■■■□□ 2.6
VPS35-202ENST00000561713 KIF14Q15058 1648 aa31.27■■■□□ 2.6
VPS35-202ENST00000561713 EFCAB2Q5VUJ9 269 aa31.25■■■□□ 2.59
VPS35-202ENST00000561713 MYO5CQ9NQX4 1742 aa31.24■■■□□ 2.59
VPS35-202ENST00000561713 FER1L4A9Z1Z3 1794 aa31.23■■■□□ 2.59
VPS35-202ENST00000561713 ATP10AO60312 1499 aa31.22■■■□□ 2.59
VPS35-202ENST00000561713 CDK11AQ9UQ88 783 aaPredicted RBP31.22■■■□□ 2.59
VPS35-202ENST00000561713 C9orf84Q5VXU9 1444 aa31.18■■■□□ 2.58
VPS35-202ENST00000561713 ARHGEF12Q9NZN5 1544 aa31.17■■■□□ 2.58
VPS35-202ENST00000561713 TROQ12816 1431 aaPredicted RBP31.14■■■□□ 2.58
VPS35-202ENST00000561713 AFAP1Q8N556 730 aa31.13■■■□□ 2.57
VPS35-202ENST00000561713 ZNF518AQ6AHZ1 1483 aa31.12■■■□□ 2.57
VPS35-202ENST00000561713 ARHGAP5Q13017 1502 aa31.12■■■□□ 2.57
VPS35-202ENST00000561713 CEBPAP49715 358 aaPredicted RBP31.11■■■□□ 2.57
VPS35-202ENST00000561713 CLIP1P30622 1438 aa31.07■■■□□ 2.57
VPS35-202ENST00000561713 KDM5CP41229 1560 aa31.06■■■□□ 2.56
VPS35-202ENST00000561713 CERKQ8TCT0 537 aa31.06■■■□□ 2.56
VPS35-202ENST00000561713 MYT1LQ9UL68 1186 aa31.05■■■□□ 2.56
VPS35-202ENST00000561713 PREX1Q8TCU6 1659 aa31.03■■■□□ 2.56
VPS35-202ENST00000561713 CASKIN1Q8WXD9 1431 aa31.03■■■□□ 2.56
VPS35-202ENST00000561713 CDC42BPBQ9Y5S2 1711 aa31.02■■■□□ 2.56
VPS35-202ENST00000561713 CCDC18Q5T9S5 1454 aa31■■■□□ 2.55
VPS35-202ENST00000561713 DIP2CQ9Y2E4 1556 aa31■■■□□ 2.55
VPS35-202ENST00000561713 PREX2Q70Z35 1606 aa30.98■■■□□ 2.55
VPS35-202ENST00000561713 FYCO1Q9BQS8 1478 aa30.97■■■□□ 2.55
VPS35-202ENST00000561713 MLH3Q9UHC1 1453 aa30.95■■■□□ 2.54
VPS35-202ENST00000561713 ABCA6Q8N139 1617 aa30.95■■■□□ 2.54
VPS35-202ENST00000561713 CDC42BPAQ5VT25 1732 aa30.94■■■□□ 2.54
VPS35-202ENST00000561713 TRAPPC8Q9Y2L5 1435 aa30.94■■■□□ 2.54
VPS35-202ENST00000561713 REREQ9P2R6 1566 aa30.93■■■□□ 2.54
VPS35-202ENST00000561713 ABCC1P33527 1531 aa30.91■■■□□ 2.54
VPS35-202ENST00000561713 UHRF1BP1Q6BDS2 1440 aa30.9■■■□□ 2.54
VPS35-202ENST00000561713 STRCQ7RTU9 1775 aa30.9■■■□□ 2.54
VPS35-202ENST00000561713 ITSN2Q9NZM3 1697 aa30.88■■■□□ 2.53
VPS35-202ENST00000561713 DMRT2Q9Y5R5 561 aa30.86■■■□□ 2.53
VPS35-202ENST00000561713 SETD1BQ9UPS6 1966 aaKnown RBP30.85■■■□□ 2.53
VPS35-202ENST00000561713 C3P01024 1663 aa30.84■■■□□ 2.53
VPS35-202ENST00000561713 AGLP35573 1532 aa30.84■■■□□ 2.53
VPS35-202ENST00000561713 ESF1Q9H501 851 aaKnown RBP30.82■■■□□ 2.52
VPS35-202ENST00000561713 KIDINS220Q9ULH0 1771 aa30.81■■■□□ 2.52
VPS35-202ENST00000561713 ZNF777Q9ULD5 760 aaPredicted RBP30.77■■■□□ 2.52
VPS35-202ENST00000561713 SAMD9LQ8IVG5 1584 aa30.75■■■□□ 2.51
VPS35-202ENST00000561713 PTPRTO14522 1441 aa30.72■■■□□ 2.51
VPS35-202ENST00000561713 CEP162Q5TB80 1403 aa30.72■■■□□ 2.51
VPS35-202ENST00000561713 CNTLNQ9NXG0 1405 aa30.71■■■□□ 2.51
VPS35-202ENST00000561713 GPATCH8Q9UKJ3 1502 aaKnown RBP30.7■■■□□ 2.51
VPS35-202ENST00000561713 HNRNPMP52272 730 aaKnown RBP eCLIP30.7■■■□□ 2.516e-6■■■■□ 20.3
VPS35-202ENST00000561713 SYCP2Q9BX26 1530 aa30.69■■■□□ 2.5
VPS35-202ENST00000561713 SPAG9O60271 1321 aaKnown RBP30.68■■■□□ 2.5
VPS35-202ENST00000561713 NCOA1Q15788 1441 aa30.63■■■□□ 2.49
VPS35-202ENST00000561713 ZMYM3Q14202 1370 aa30.62■■■□□ 2.49
VPS35-202ENST00000561713 SUPT6HQ7KZ85 1726 aaKnown RBP30.61■■■□□ 2.49
VPS35-202ENST00000561713 EHBP1L1Q8N3D4 1523 aa30.61■■■□□ 2.49
VPS35-202ENST00000561713 TIAM1Q13009 1591 aa30.61■■■□□ 2.49
VPS35-202ENST00000561713 MROH2AA6NES4 1674 aa30.6■■■□□ 2.49
VPS35-202ENST00000561713 NPATQ14207 1427 aa30.6■■■□□ 2.49
VPS35-202ENST00000561713 MTUS2Q5JR59 1369 aa30.6■■■□□ 2.49
VPS35-202ENST00000561713 CFDP1Q9UEE9 299 aaPredicted RBP30.6■■■□□ 2.49
VPS35-202ENST00000561713 LTBP4Q8N2S1 1624 aa30.59■■■□□ 2.49
VPS35-202ENST00000561713 ATP7AQ04656 1500 aa30.58■■■□□ 2.49
VPS35-202ENST00000561713 KIAA1107Q9UPP5 1409 aa30.58■■■□□ 2.49
VPS35-202ENST00000561713 CCNB3Q8WWL7 1395 aa30.56■■■□□ 2.48
VPS35-202ENST00000561713 DISP3Q9P2K9 1392 aa30.56■■■□□ 2.48
VPS35-202ENST00000561713 CAMSAP1Q5T5Y3 1602 aa30.56■■■□□ 2.48
VPS35-202ENST00000561713 INO80Q9ULG1 1556 aaPredicted RBP30.55■■■□□ 2.48
VPS35-202ENST00000561713 PLEKHH2Q8IVE3 1493 aa30.55■■■□□ 2.48
VPS35-202ENST00000561713 A2MP01023 1474 aa30.54■■■□□ 2.48
VPS35-202ENST00000561713 PLXNC1O60486 1568 aa30.54■■■□□ 2.48
VPS35-202ENST00000561713 CLTCQ00610 1675 aaKnown RBP30.52■■■□□ 2.48
VPS35-202ENST00000561713 NCKAP5LQ9HCH0 1330 aa30.51■■■□□ 2.48
VPS35-202ENST00000561713 ILDR2Q71H61 639 aa30.51■■■□□ 2.47
VPS35-202ENST00000561713 GGT6Q6P531 493 aa30.5■■■□□ 2.47
VPS35-202ENST00000561713 ZNF644Q9H582 1327 aaPredicted RBP30.47■■■□□ 2.47
VPS35-202ENST00000561713 PTPRKQ15262 1439 aa30.46■■■□□ 2.47
VPS35-202ENST00000561713 IQSEC2Q5JU85 1478 aa30.45■■■□□ 2.47
VPS35-202ENST00000561713 MYO3AQ8NEV4 1616 aa30.44■■■□□ 2.46
VPS35-202ENST00000561713 LOC105371045A0A1W2PR82 267 aa30.42■■■□□ 2.46
VPS35-202ENST00000561713 ZNF335Q9H4Z2 1342 aaPredicted RBP30.42■■■□□ 2.46
VPS35-202ENST00000561713 ZNF142P52746 1687 aaPredicted RBP30.41■■■□□ 2.46
VPS35-202ENST00000561713 ADGBQ8N7X0 1667 aa30.4■■■□□ 2.46
VPS35-202ENST00000561713 CEP170BQ9Y4F5 1589 aaPredicted RBP30.4■■■□□ 2.46
VPS35-202ENST00000561713 MBD5Q9P267 1494 aa30.39■■■□□ 2.46
VPS35-202ENST00000561713 NCOA2Q15596 1464 aa30.38■■■□□ 2.45
VPS35-202ENST00000561713 PKD2Q13563 968 aa30.38■■■□□ 2.45
VPS35-202ENST00000561713 PPP6R1Q9UPN7 881 aa30.38■■■□□ 2.45
VPS35-202ENST00000561713 PLA2R1Q13018 1463 aa30.38■■■□□ 2.45
VPS35-202ENST00000561713 VPS8Q8N3P4 1428 aa30.35■■■□□ 2.45
VPS35-202ENST00000561713 TCOF1Q13428 1488 aaKnown RBP30.35■■■□□ 2.45
VPS35-202ENST00000561713 SPATA31D1Q6ZQQ2 1576 aa30.35■■■□□ 2.45
VPS35-202ENST00000561713 SOCS7O14512 581 aa30.33■■■□□ 2.45
VPS35-202ENST00000561713 RTEL1-TNFRSF6BF6WH68 1400 aa30.32■■■□□ 2.44
VPS35-202ENST00000561713 CAMSAP2Q08AD1 1489 aa30.31■■■□□ 2.44
VPS35-202ENST00000561713 DHX29Q7Z478 1369 aaKnown RBP30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms