RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 CCDC180Q9P1Z9 1646 aa7.36□□□□□ -1.23
SPG11-225ENST00000561391 RB1CC1Q8TDY2 1594 aa7.36□□□□□ -1.23
SPG11-225ENST00000561391 TMEM92Q6UXU6 159 aa7.35□□□□□ -1.23
SPG11-225ENST00000561391 SOX12O15370 315 aa7.33□□□□□ -1.24
SPG11-225ENST00000561391 GPR153Q6NV75 609 aa7.33□□□□□ -1.24
SPG11-225ENST00000561391 ANKRD13DQ6ZTN6 518 aa7.33□□□□□ -1.24
SPG11-225ENST00000561391 CECR2Q9BXF3 1484 aa7.32□□□□□ -1.24
SPG11-225ENST00000561391 RIOK3O14730 519 aaKnown RBP7.31□□□□□ -1.24
SPG11-225ENST00000561391 ARSIQ5FYB1 569 aa7.31□□□□□ -1.24
SPG11-225ENST00000561391 PHF8Q9UPP1 1060 aa7.31□□□□□ -1.24
SPG11-225ENST00000561391 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.3□□□□□ -1.24
SPG11-225ENST00000561391 DCAF8L2P0C7V8 631 aa7.3□□□□□ -1.24
SPG11-225ENST00000561391 ZFP91Q96JP5 570 aaPredicted RBP7.3□□□□□ -1.24
SPG11-225ENST00000561391 VGFO15240 615 aaPredicted RBP7.29□□□□□ -1.24
SPG11-225ENST00000561391 MS4A4AQ96JQ5 239 aa7.29□□□□□ -1.24
SPG11-225ENST00000561391 RTN4Q9NQC3 1192 aaKnown RBP7.29□□□□□ -1.24
SPG11-225ENST00000561391 ZNF316A6NFI3 1004 aaPredicted RBP7.28□□□□□ -1.24
SPG11-225ENST00000561391 LSM11P83369 360 aaKnown RBP eCLIP7.27□□□□□ -1.25
SPG11-225ENST00000561391 AMER1Q5JTC6 1135 aaPredicted RBP7.26□□□□□ -1.25
SPG11-225ENST00000561391 KHSRPQ92945 711 aaKnown RBP eCLIP7.26□□□□□ -1.25
SPG11-225ENST00000561391 NLRP6P59044 892 aa7.25□□□□□ -1.25
SPG11-225ENST00000561391 RNF25Q96BH1 459 aaPredicted RBP7.25□□□□□ -1.25
SPG11-225ENST00000561391 IRX2Q9BZI1 471 aaPredicted RBP7.23□□□□□ -1.25
SPG11-225ENST00000561391 HCSTQ9UBK5 93 aa7.23□□□□□ -1.25
SPG11-225ENST00000561391 CC2D2AQ9P2K1 1620 aa7.23□□□□□ -1.25
SPG11-225ENST00000561391 NUDT7P0C024 238 aa7.22□□□□□ -1.25
SPG11-225ENST00000561391 PBX2P40425 430 aa7.22□□□□□ -1.25
SPG11-225ENST00000561391 TAOK2Q9UL54 1235 aa7.22□□□□□ -1.25
SPG11-225ENST00000561391 BCL11BQ9C0K0 894 aaPredicted RBP7.21□□□□□ -1.26
SPG11-225ENST00000561391 STK24Q9Y6E0 443 aa7.2□□□□□ -1.26
SPG11-225ENST00000561391 C2orf72A6NCS6 295 aa7.18□□□□□ -1.26
SPG11-225ENST00000561391 LHX6Q9UPM6 363 aa7.18□□□□□ -1.26
SPG11-225ENST00000561391 AXIN2Q9Y2T1 843 aa7.18□□□□□ -1.26
SPG11-225ENST00000561391 BICRAQ9NZM4 1560 aa7.17□□□□□ -1.26
SPG11-225ENST00000561391 FBXO22Q8NEZ5 403 aa7.17□□□□□ -1.26
SPG11-225ENST00000561391 UNC13AQ9UPW8 1703 aa7.17□□□□□ -1.26
SPG11-225ENST00000561391 NACADO15069 1562 aa7.16□□□□□ -1.26
SPG11-225ENST00000561391 STK25O00506 426 aa7.15□□□□□ -1.26
SPG11-225ENST00000561391 TMC2Q8TDI7 906 aa7.15□□□□□ -1.26
SPG11-225ENST00000561391 PCDHGA4Q9Y5G9 962 aa7.15□□□□□ -1.26
SPG11-225ENST00000561391 KIF3CO14782 793 aa7.14□□□□□ -1.27
SPG11-225ENST00000561391 MFRPQ9BY79 579 aa7.14□□□□□ -1.27
SPG11-225ENST00000561391 ADGRD1Q6QNK2 874 aa7.13□□□□□ -1.27
SPG11-225ENST00000561391 POTEEQ6S8J3 1075 aa7.12□□□□□ -1.27
SPG11-225ENST00000561391 CUX2O14529 1486 aa7.11□□□□□ -1.27
SPG11-225ENST00000561391 PSDA5PKW4 1024 aaPredicted RBP7.11□□□□□ -1.27
SPG11-225ENST00000561391 ARHGAP33O14559 1287 aa7.11□□□□□ -1.27
SPG11-225ENST00000561391 SLC34A2O95436 690 aa7.11□□□□□ -1.27
SPG11-225ENST00000561391 RGS20O76081 388 aa7.09□□□□□ -1.27
SPG11-225ENST00000561391 STAC3Q96MF2 364 aa7.09□□□□□ -1.27
SPG11-225ENST00000561391 ECM2O94769 699 aaPredicted RBP7.07□□□□□ -1.28
SPG11-225ENST00000561391 KCTD12Q96CX2 325 aaKnown RBP7.06□□□□□ -1.28
SPG11-225ENST00000561391 KCNH8Q96L42 1107 aa7.06□□□□□ -1.28
SPG11-225ENST00000561391 TK2O00142 265 aa7.05□□□□□ -1.28
SPG11-225ENST00000561391 EIF4G1Q04637 1599 aaKnown RBP7.04□□□□□ -1.28
SPG11-225ENST00000561391 PSEN2P49810 448 aa7.04□□□□□ -1.28
SPG11-225ENST00000561391 PPP4R3BQ5MIZ7 849 aa7.04□□□□□ -1.28
SPG11-225ENST00000561391 Q6ZNB5 142 aa7.04□□□□□ -1.28
SPG11-225ENST00000561391 DMRTA1Q5VZB9 504 aa7.03□□□□□ -1.28
SPG11-225ENST00000561391 ERCC6Q03468 1493 aa7.02□□□□□ -1.29
SPG11-225ENST00000561391 HRO43593 1189 aa7.01□□□□□ -1.29
SPG11-225ENST00000561391 PKD2Q13563 968 aa7.01□□□□□ -1.29
SPG11-225ENST00000561391 PTCD2Q8WV60 388 aaKnown RBP7□□□□□ -1.29
SPG11-225ENST00000561391 KCNK17Q96T54 332 aa7□□□□□ -1.29
SPG11-225ENST00000561391 TBC1D12O60347 775 aa6.99□□□□□ -1.29
SPG11-225ENST00000561391 PPP1R37O75864 691 aa6.99□□□□□ -1.29
SPG11-225ENST00000561391 PTPN5P54829 565 aa6.99□□□□□ -1.29
SPG11-225ENST00000561391 PLPP6Q8IY26 295 aa6.99□□□□□ -1.29
SPG11-225ENST00000561391 RGL2O15211 777 aa6.97□□□□□ -1.29
SPG11-225ENST00000561391 KDM4FA0A1W2PPD8 638 aa6.96□□□□□ -1.3
SPG11-225ENST00000561391 FOXK1P85037 733 aa6.96□□□□□ -1.3
SPG11-225ENST00000561391 GPHNQ9NQX3 736 aaPredicted RBP6.94□□□□□ -1.3
SPG11-225ENST00000561391 GOLGA8CPA6NN73 597 aa6.93□□□□□ -1.3
SPG11-225ENST00000561391 DSG2Q14126 1118 aa6.93□□□□□ -1.3
SPG11-225ENST00000561391 ZNF454Q8N9F8 522 aa6.93□□□□□ -1.3
SPG11-225ENST00000561391 VPS9D1Q9Y2B5 631 aa6.93□□□□□ -1.3
SPG11-225ENST00000561391 A0A0G2JS52 829 aa6.92□□□□□ -1.3
SPG11-225ENST00000561391 UPF1Q92900 1129 aaKnown RBP eCLIP6.92□□□□□ -1.3
SPG11-225ENST00000561391 IFFO2Q5TF58 517 aa6.91□□□□□ -1.3
SPG11-225ENST00000561391 SHROOM4Q9ULL8 1493 aa6.9□□□□□ -1.31
SPG11-225ENST00000561391 THSD4Q6ZMP0 1018 aa6.89□□□□□ -1.31
SPG11-225ENST00000561391 MRPL50Q8N5N7 158 aaKnown RBP6.89□□□□□ -1.31
SPG11-225ENST00000561391 PTPREP23469 700 aa6.88□□□□□ -1.31
SPG11-225ENST00000561391 WNT2BQ93097 391 aa6.88□□□□□ -1.31
SPG11-225ENST00000561391 BCL2L12Q9HB09 334 aa6.88□□□□□ -1.31
SPG11-225ENST00000561391 SLC4A5Q9BY07 1137 aa6.86□□□□□ -1.31
SPG11-225ENST00000561391 NBPF3Q9H094 633 aa6.86□□□□□ -1.31
SPG11-225ENST00000561391 OXER1Q8TDS5 423 aa6.85□□□□□ -1.31
SPG11-225ENST00000561391 HS6ST3Q8IZP7 471 aa6.83□□□□□ -1.32
SPG11-225ENST00000561391 ZBED2Q9BTP6 218 aa6.83□□□□□ -1.32
SPG11-225ENST00000561391 SCRIBQ14160 1630 aa6.83□□□□□ -1.32
SPG11-225ENST00000561391 BHMG1C9JSJ3 638 aaPredicted RBP6.82□□□□□ -1.32
SPG11-225ENST00000561391 FOSBP53539 338 aa6.82□□□□□ -1.32
SPG11-225ENST00000561391 PPP1R15BQ5SWA1 713 aa6.82□□□□□ -1.32
SPG11-225ENST00000561391 SLC24A1O60721 1099 aa6.81□□□□□ -1.32
SPG11-225ENST00000561391 CHGAP10645 457 aaKnown RBP6.81□□□□□ -1.32
SPG11-225ENST00000561391 TRAF7Q6Q0C0 670 aa6.81□□□□□ -1.32
SPG11-225ENST00000561391 JPH4Q96JJ6 628 aa6.81□□□□□ -1.32
SPG11-225ENST00000561391 ANKK1Q8NFD2 765 aa6.8□□□□□ -1.32
SPG11-225ENST00000561391 ZDHHC16Q969W1 377 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms