RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PTPRMP28827 1452 aa19.16■□□□□ 0.66
USP3-220ENST00000561381 ARHGEF40Q8TER5 1519 aa19.15■□□□□ 0.66
USP3-220ENST00000561381 BCORL1Q5H9F3 1711 aa19.14■□□□□ 0.66
USP3-220ENST00000561381 PLCH2O75038 1416 aa19.14■□□□□ 0.65
USP3-220ENST00000561381 MADDQ8WXG6 1647 aa19.11■□□□□ 0.65
USP3-220ENST00000561381 YEATS2Q9ULM3 1422 aa19.11■□□□□ 0.65
USP3-220ENST00000561381 KIF14Q15058 1648 aa19.11■□□□□ 0.65
USP3-220ENST00000561381 ZMYM4Q5VZL5 1548 aa19.1■□□□□ 0.65
USP3-220ENST00000561381 SCAPERQ9BY12 1400 aa19.1■□□□□ 0.65
USP3-220ENST00000561381 ILDR1Q86SU0 546 aaPredicted RBP19.1■□□□□ 0.65
USP3-220ENST00000561381 CDK11AQ9UQ88 783 aaPredicted RBP19.1■□□□□ 0.65
USP3-220ENST00000561381 LRRIQ1Q96JM4 1722 aa19.1■□□□□ 0.65
USP3-220ENST00000561381 ZFYVE16Q7Z3T8 1539 aa19.09■□□□□ 0.65
USP3-220ENST00000561381 TROQ12816 1431 aaPredicted RBP19.08■□□□□ 0.65
USP3-220ENST00000561381 SIGLEC1Q9BZZ2 1709 aa19.08■□□□□ 0.64
USP3-220ENST00000561381 POGZQ7Z3K3 1410 aa19.08■□□□□ 0.64
USP3-220ENST00000561381 MYO5CQ9NQX4 1742 aa19.07■□□□□ 0.64
USP3-220ENST00000561381 EFCAB2Q5VUJ9 269 aa19.06■□□□□ 0.64
USP3-220ENST00000561381 MAGI2Q86UL8 1455 aa19.04■□□□□ 0.64
USP3-220ENST00000561381 PCF11O94913 1555 aaKnown RBP19.04■□□□□ 0.64
USP3-220ENST00000561381 RIMS1Q86UR5 1692 aaKnown RBP19.04■□□□□ 0.64
USP3-220ENST00000561381 CLIP1P30622 1438 aa19.03■□□□□ 0.64
USP3-220ENST00000561381 MLECQ14165 292 aa19.02■□□□□ 0.64
USP3-220ENST00000561381 CASKIN1Q8WXD9 1431 aa19.01■□□□□ 0.63
USP3-220ENST00000561381 ARHGAP5Q13017 1502 aa19.01■□□□□ 0.63
USP3-220ENST00000561381 AFAP1Q8N556 730 aa18.99■□□□□ 0.63
USP3-220ENST00000561381 ATP10AO60312 1499 aa18.97■□□□□ 0.63
USP3-220ENST00000561381 LMTK3Q96Q04 1460 aa18.97■□□□□ 0.63
USP3-220ENST00000561381 CCDC18Q5T9S5 1454 aa18.97■□□□□ 0.63
USP3-220ENST00000561381 CDC42BPBQ9Y5S2 1711 aa18.96■□□□□ 0.63
USP3-220ENST00000561381 ZNF518AQ6AHZ1 1483 aa18.96■□□□□ 0.63
USP3-220ENST00000561381 C9orf84Q5VXU9 1444 aa18.95■□□□□ 0.62
USP3-220ENST00000561381 KDM5CP41229 1560 aa18.93■□□□□ 0.62
USP3-220ENST00000561381 FYCO1Q9BQS8 1478 aa18.93■□□□□ 0.62
USP3-220ENST00000561381 FER1L4A9Z1Z3 1794 aa18.92■□□□□ 0.62
USP3-220ENST00000561381 ARHGEF12Q9NZN5 1544 aa18.92■□□□□ 0.62
USP3-220ENST00000561381 PREX2Q70Z35 1606 aa18.92■□□□□ 0.62
USP3-220ENST00000561381 HSPA2P54652 639 aa18.91■□□□□ 0.62
USP3-220ENST00000561381 MYT1LQ9UL68 1186 aa18.91■□□□□ 0.62
USP3-220ENST00000561381 TRAPPC8Q9Y2L5 1435 aa18.91■□□□□ 0.62
USP3-220ENST00000561381 ABCC1P33527 1531 aa18.89■□□□□ 0.61
USP3-220ENST00000561381 DIP2CQ9Y2E4 1556 aa18.88■□□□□ 0.61
USP3-220ENST00000561381 CDC42BPAQ5VT25 1732 aa18.88■□□□□ 0.61
USP3-220ENST00000561381 ABCA6Q8N139 1617 aa18.86■□□□□ 0.61
USP3-220ENST00000561381 MLH3Q9UHC1 1453 aa18.86■□□□□ 0.61
USP3-220ENST00000561381 CEBPAP49715 358 aaPredicted RBP18.86■□□□□ 0.61
USP3-220ENST00000561381 CNKSR2Q8WXI2 1034 aa18.86■□□□□ 0.61
USP3-220ENST00000561381 ITSN2Q9NZM3 1697 aa18.85■□□□□ 0.61
USP3-220ENST00000561381 HOXD11P31277 338 aaPredicted RBP18.84■□□□□ 0.61
USP3-220ENST00000561381 ZNF777Q9ULD5 760 aaPredicted RBP18.84■□□□□ 0.61
USP3-220ENST00000561381 GPATCH8Q9UKJ3 1502 aaKnown RBP18.83■□□□□ 0.6
USP3-220ENST00000561381 DCAF8L1A6NGE4 600 aa18.82■□□□□ 0.6
USP3-220ENST00000561381 REREQ9P2R6 1566 aa18.81■□□□□ 0.6
USP3-220ENST00000561381 SAMD9LQ8IVG5 1584 aa18.81■□□□□ 0.6
USP3-220ENST00000561381 KIDINS220Q9ULH0 1771 aa18.8■□□□□ 0.6
USP3-220ENST00000561381 HNRNPMP52272 730 aaKnown RBP eCLIP18.79■□□□□ 0.6
USP3-220ENST00000561381 CACNB1Q02641 598 aaPredicted RBP18.79■□□□□ 0.6
USP3-220ENST00000561381 SYCP2Q9BX26 1530 aa18.79■□□□□ 0.6
USP3-220ENST00000561381 FBXO41Q8TF61 875 aa18.78■□□□□ 0.6
USP3-220ENST00000561381 AGLP35573 1532 aa18.77■□□□□ 0.6
USP3-220ENST00000561381 MTUS2Q5JR59 1369 aa18.77■□□□□ 0.6
USP3-220ENST00000561381 CFDP1Q9UEE9 299 aaPredicted RBP18.76■□□□□ 0.59
USP3-220ENST00000561381 CCNB3Q8WWL7 1395 aa18.76■□□□□ 0.59
USP3-220ENST00000561381 PREX1Q8TCU6 1659 aa18.75■□□□□ 0.59
USP3-220ENST00000561381 CEP162Q5TB80 1403 aa18.74■□□□□ 0.59
USP3-220ENST00000561381 SPAG9O60271 1321 aaKnown RBP18.74■□□□□ 0.59
USP3-220ENST00000561381 KIAA1107Q9UPP5 1409 aa18.72■□□□□ 0.59
USP3-220ENST00000561381 C3P01024 1663 aa18.71■□□□□ 0.59
USP3-220ENST00000561381 ZNF644Q9H582 1327 aaPredicted RBP18.71■□□□□ 0.59
USP3-220ENST00000561381 ESF1Q9H501 851 aaKnown RBP18.7■□□□□ 0.58
USP3-220ENST00000561381 SETD1BQ9UPS6 1966 aaKnown RBP18.7■□□□□ 0.58
USP3-220ENST00000561381 TIAM1Q13009 1591 aa18.69■□□□□ 0.58
USP3-220ENST00000561381 UHRF1BP1Q6BDS2 1440 aa18.69■□□□□ 0.58
USP3-220ENST00000561381 RNF216Q9NWF9 866 aaPredicted RBP18.69■□□□□ 0.58
USP3-220ENST00000561381 PLEKHH2Q8IVE3 1493 aa18.69■□□□□ 0.58
USP3-220ENST00000561381 ATP7AQ04656 1500 aa18.69■□□□□ 0.58
USP3-220ENST00000561381 EHBP1L1Q8N3D4 1523 aa18.68■□□□□ 0.58
USP3-220ENST00000561381 SUPT6HQ7KZ85 1726 aaKnown RBP18.67■□□□□ 0.58
USP3-220ENST00000561381 INO80Q9ULG1 1556 aaPredicted RBP18.67■□□□□ 0.58
USP3-220ENST00000561381 STRCQ7RTU9 1775 aa18.65■□□□□ 0.58
USP3-220ENST00000561381 LOC105371045A0A1W2PR82 267 aa18.65■□□□□ 0.58
USP3-220ENST00000561381 CNTLNQ9NXG0 1405 aa18.65■□□□□ 0.58
USP3-220ENST00000561381 A2MP01023 1474 aa18.65■□□□□ 0.58
USP3-220ENST00000561381 PLXNC1O60486 1568 aa18.64■□□□□ 0.57
USP3-220ENST00000561381 CERKQ8TCT0 537 aa18.63■□□□□ 0.57
USP3-220ENST00000561381 MBD5Q9P267 1494 aa18.63■□□□□ 0.57
USP3-220ENST00000561381 ZMYM3Q14202 1370 aa18.61■□□□□ 0.57
USP3-220ENST00000561381 GGT6Q6P531 493 aa18.6■□□□□ 0.57
USP3-220ENST00000561381 NCOA2Q15596 1464 aa18.59■□□□□ 0.57
USP3-220ENST00000561381 MROH2AA6NES4 1674 aa18.59■□□□□ 0.57
USP3-220ENST00000561381 CLTCQ00610 1675 aaKnown RBP18.57■□□□□ 0.56
USP3-220ENST00000561381 NPATQ14207 1427 aa18.57■□□□□ 0.56
USP3-220ENST00000561381 ADGBQ8N7X0 1667 aa18.56■□□□□ 0.56
USP3-220ENST00000561381 RTEL1-TNFRSF6BF6WH68 1400 aa18.55■□□□□ 0.56
USP3-220ENST00000561381 CAMSAP2Q08AD1 1489 aa18.54■□□□□ 0.56
USP3-220ENST00000561381 VPS8Q8N3P4 1428 aa18.54■□□□□ 0.56
USP3-220ENST00000561381 PTPRTO14522 1441 aa18.53■□□□□ 0.56
USP3-220ENST00000561381 NCOA1Q15788 1441 aa18.53■□□□□ 0.56
USP3-220ENST00000561381 PTPRKQ15262 1439 aa18.52■□□□□ 0.56
USP3-220ENST00000561381 NCBP3Q53F19 620 aaKnown RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms