RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 LRRIQ1Q96JM4 1722 aa26.4■■□□□ 1.82
SNX1-213ENST00000561026 POGZQ7Z3K3 1410 aa26.4■■□□□ 1.82
SNX1-213ENST00000561026 YEATS2Q9ULM3 1422 aa26.39■■□□□ 1.82
SNX1-213ENST00000561026 MYO5CQ9NQX4 1742 aa26.39■■□□□ 1.81
SNX1-213ENST00000561026 ZFYVE16Q7Z3T8 1539 aa26.38■■□□□ 1.81
SNX1-213ENST00000561026 PCF11O94913 1555 aaKnown RBP26.37■■□□□ 1.81
SNX1-213ENST00000561026 CCDC18Q5T9S5 1454 aa26.36■■□□□ 1.81
SNX1-213ENST00000561026 MADDQ8WXG6 1647 aa26.34■■□□□ 1.81
SNX1-213ENST00000561026 ARHGAP5Q13017 1502 aa26.33■■□□□ 1.81
SNX1-213ENST00000561026 FYCO1Q9BQS8 1478 aa26.31■■□□□ 1.8
SNX1-213ENST00000561026 AFAP1Q8N556 730 aa26.29■■□□□ 1.8
SNX1-213ENST00000561026 ATP10AO60312 1499 aa26.27■■□□□ 1.8
SNX1-213ENST00000561026 ZNF518AQ6AHZ1 1483 aa26.27■■□□□ 1.8
SNX1-213ENST00000561026 SIGLEC1Q9BZZ2 1709 aa26.26■■□□□ 1.79
SNX1-213ENST00000561026 MLECQ14165 292 aa26.23■■□□□ 1.79
SNX1-213ENST00000561026 CDC42BPBQ9Y5S2 1711 aa26.23■■□□□ 1.79
SNX1-213ENST00000561026 C9orf84Q5VXU9 1444 aa26.23■■□□□ 1.79
SNX1-213ENST00000561026 RIMS1Q86UR5 1692 aaKnown RBP26.22■■□□□ 1.79
SNX1-213ENST00000561026 KDM5CP41229 1560 aa26.21■■□□□ 1.79
SNX1-213ENST00000561026 PREX2Q70Z35 1606 aa26.2■■□□□ 1.78
SNX1-213ENST00000561026 ILDR1Q86SU0 546 aaPredicted RBP26.19■■□□□ 1.78
SNX1-213ENST00000561026 MYT1LQ9UL68 1186 aa26.18■■□□□ 1.78
SNX1-213ENST00000561026 ARHGEF12Q9NZN5 1544 aa26.17■■□□□ 1.78
SNX1-213ENST00000561026 PLPPR3Q6T4P5 718 aa26.16■■□□□ 1.78
SNX1-213ENST00000561026 LMTK3Q96Q04 1460 aa26.15■■□□□ 1.78
SNX1-213ENST00000561026 TRAPPC8Q9Y2L5 1435 aa26.15■■□□□ 1.78
SNX1-213ENST00000561026 ABCC1P33527 1531 aa26.15■■□□□ 1.78
SNX1-213ENST00000561026 MLH3Q9UHC1 1453 aa26.15■■□□□ 1.78
SNX1-213ENST00000561026 CDC42BPAQ5VT25 1732 aa26.13■■□□□ 1.77
SNX1-213ENST00000561026 GPATCH8Q9UKJ3 1502 aaKnown RBP26.11■■□□□ 1.77
SNX1-213ENST00000561026 ZNF777Q9ULD5 760 aaPredicted RBP26.1■■□□□ 1.77
SNX1-213ENST00000561026 FER1L4A9Z1Z3 1794 aa26.1■■□□□ 1.77
SNX1-213ENST00000561026 DIP2CQ9Y2E4 1556 aa26.09■■□□□ 1.77
SNX1-213ENST00000561026 CEP162Q5TB80 1403 aa26.08■■□□□ 1.76
SNX1-213ENST00000561026 ITSN2Q9NZM3 1697 aa26.07■■□□□ 1.76
SNX1-213ENST00000561026 MTUS2Q5JR59 1369 aa26.07■■□□□ 1.76
SNX1-213ENST00000561026 REREQ9P2R6 1566 aa26.06■■□□□ 1.76
SNX1-213ENST00000561026 CFDP1Q9UEE9 299 aaPredicted RBP26.05■■□□□ 1.76
SNX1-213ENST00000561026 ABCA6Q8N139 1617 aa26.05■■□□□ 1.76
SNX1-213ENST00000561026 HSPA2P54652 639 aa26.04■■□□□ 1.76
SNX1-213ENST00000561026 CCNB3Q8WWL7 1395 aa26.04■■□□□ 1.76
SNX1-213ENST00000561026 SAMD9LQ8IVG5 1584 aa26.03■■□□□ 1.76
SNX1-213ENST00000561026 CEBPAP49715 358 aaPredicted RBP26.02■■□□□ 1.76
SNX1-213ENST00000561026 HNRNPMP52272 730 aaKnown RBP eCLIP26.02■■□□□ 1.76
SNX1-213ENST00000561026 AGLP35573 1532 aa26■■□□□ 1.75
SNX1-213ENST00000561026 KIAA1107Q9UPP5 1409 aa26■■□□□ 1.75
SNX1-213ENST00000561026 KIDINS220Q9ULH0 1771 aa26■■□□□ 1.75
SNX1-213ENST00000561026 SYCP2Q9BX26 1530 aa25.99■■□□□ 1.75
SNX1-213ENST00000561026 SPAG9O60271 1321 aaKnown RBP25.98■■□□□ 1.75
SNX1-213ENST00000561026 PLEKHH2Q8IVE3 1493 aa25.98■■□□□ 1.75
SNX1-213ENST00000561026 EHBP1L1Q8N3D4 1523 aa25.93■■□□□ 1.74
SNX1-213ENST00000561026 LOC105371045A0A1W2PR82 267 aa25.93■■□□□ 1.74
SNX1-213ENST00000561026 ESF1Q9H501 851 aaKnown RBP25.93■■□□□ 1.74
SNX1-213ENST00000561026 ZNF644Q9H582 1327 aaPredicted RBP25.9■■□□□ 1.74
SNX1-213ENST00000561026 TIAM1Q13009 1591 aa25.9■■□□□ 1.74
SNX1-213ENST00000561026 ATP7AQ04656 1500 aa25.88■■□□□ 1.73
SNX1-213ENST00000561026 PREX1Q8TCU6 1659 aa25.87■■□□□ 1.73
SNX1-213ENST00000561026 FBXO41Q8TF61 875 aa25.86■■□□□ 1.73
SNX1-213ENST00000561026 CNTLNQ9NXG0 1405 aa25.85■■□□□ 1.73
SNX1-213ENST00000561026 SETD1BQ9UPS6 1966 aaKnown RBP25.85■■□□□ 1.73
SNX1-213ENST00000561026 INO80Q9ULG1 1556 aaPredicted RBP25.84■■□□□ 1.73
SNX1-213ENST00000561026 UHRF1BP1Q6BDS2 1440 aa25.84■■□□□ 1.73
SNX1-213ENST00000561026 MBD5Q9P267 1494 aa25.84■■□□□ 1.73
SNX1-213ENST00000561026 C3P01024 1663 aa25.83■■□□□ 1.72
SNX1-213ENST00000561026 A2MP01023 1474 aa25.83■■□□□ 1.72
SNX1-213ENST00000561026 NCOA2Q15596 1464 aa25.81■■□□□ 1.72
SNX1-213ENST00000561026 VPS8Q8N3P4 1428 aa25.79■■□□□ 1.72
SNX1-213ENST00000561026 PLXNC1O60486 1568 aa25.79■■□□□ 1.72
SNX1-213ENST00000561026 SUPT6HQ7KZ85 1726 aaKnown RBP25.78■■□□□ 1.72
SNX1-213ENST00000561026 ZMYM3Q14202 1370 aa25.77■■□□□ 1.72
SNX1-213ENST00000561026 RTEL1-TNFRSF6BF6WH68 1400 aa25.76■■□□□ 1.71
SNX1-213ENST00000561026 RSPH4AQ5TD94 716 aa25.74■■□□□ 1.71
SNX1-213ENST00000561026 GGT6Q6P531 493 aa25.74■■□□□ 1.71
SNX1-213ENST00000561026 DMRT2Q9Y5R5 561 aa25.74■■□□□ 1.71
SNX1-213ENST00000561026 PPP6R1Q9UPN7 881 aa25.72■■□□□ 1.71
SNX1-213ENST00000561026 NPATQ14207 1427 aa25.72■■□□□ 1.71
SNX1-213ENST00000561026 MROH2AA6NES4 1674 aa25.71■■□□□ 1.71
SNX1-213ENST00000561026 ADGBQ8N7X0 1667 aa25.71■■□□□ 1.71
SNX1-213ENST00000561026 CAMSAP2Q08AD1 1489 aa25.71■■□□□ 1.71
SNX1-213ENST00000561026 LRRC9Q6ZRR7 1453 aa25.71■■□□□ 1.71
SNX1-213ENST00000561026 CCDC141Q6ZP82 1450 aa25.7■■□□□ 1.7
SNX1-213ENST00000561026 STRCQ7RTU9 1775 aa25.7■■□□□ 1.7
SNX1-213ENST00000561026 DHX29Q7Z478 1369 aaKnown RBP25.69■■□□□ 1.7
SNX1-213ENST00000561026 CERKQ8TCT0 537 aa25.69■■□□□ 1.7
SNX1-213ENST00000561026 KANK4Q5T7N3 995 aaPredicted RBP25.67■■□□□ 1.7
SNX1-213ENST00000561026 MAP3K1Q13233 1512 aa25.66■■□□□ 1.7
SNX1-213ENST00000561026 CLTCQ00610 1675 aaKnown RBP25.65■■□□□ 1.7
SNX1-213ENST00000561026 TSPY4P0CV99 314 aa25.63■■□□□ 1.69
SNX1-213ENST00000561026 TSPY10P0CW01 314 aa25.63■■□□□ 1.69
SNX1-213ENST00000561026 PTPRKQ15262 1439 aa25.62■■□□□ 1.69
SNX1-213ENST00000561026 PTPRTO14522 1441 aa25.61■■□□□ 1.69
SNX1-213ENST00000561026 KIF3BO15066 747 aa25.61■■□□□ 1.69
SNX1-213ENST00000561026 ARHGEF5Q12774 1597 aa25.6■■□□□ 1.69
SNX1-213ENST00000561026 NCOA1Q15788 1441 aa25.6■■□□□ 1.69
SNX1-213ENST00000561026 MIA2Q96PC5 1412 aa25.55■■□□□ 1.68
SNX1-213ENST00000561026 CAMSAP1Q5T5Y3 1602 aa25.54■■□□□ 1.68
SNX1-213ENST00000561026 MYOM3Q5VTT5 1437 aa25.54■■□□□ 1.68
SNX1-213ENST00000561026 WASHC2CQ9Y4E1 1318 aa25.51■■□□□ 1.67
SNX1-213ENST00000561026 APLP2Q06481 763 aa25.51■■□□□ 1.67
SNX1-213ENST00000561026 MYO3AQ8NEV4 1616 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms