RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 RICTORQ6R327 1708 aa20.56■□□□□ 0.88
CTDSPL2-209ENST00000560620 VPS8Q8N3P4 1428 aa20.55■□□□□ 0.88
CTDSPL2-209ENST00000560620 CDC42BPBQ9Y5S2 1711 aa20.55■□□□□ 0.88
CTDSPL2-209ENST00000560620 PREX2Q70Z35 1606 aa20.54■□□□□ 0.88
CTDSPL2-209ENST00000560620 MYT1LQ9UL68 1186 aa20.53■□□□□ 0.88
CTDSPL2-209ENST00000560620 ZNF777Q9ULD5 760 aaPredicted RBP20.53■□□□□ 0.88
CTDSPL2-209ENST00000560620 ARID4BQ4LE39 1312 aaPredicted RBP20.53■□□□□ 0.88
CTDSPL2-209ENST00000560620 CCNB3Q8WWL7 1395 aa20.51■□□□□ 0.87
CTDSPL2-209ENST00000560620 CDC42BPAQ5VT25 1732 aa20.51■□□□□ 0.87
CTDSPL2-209ENST00000560620 POGZQ7Z3K3 1410 aa20.51■□□□□ 0.87
CTDSPL2-209ENST00000560620 EHBP1L1Q8N3D4 1523 aa20.5■□□□□ 0.87
CTDSPL2-209ENST00000560620 CFDP1Q9UEE9 299 aaPredicted RBP20.48■□□□□ 0.87
CTDSPL2-209ENST00000560620 ZFYVE16Q7Z3T8 1539 aa20.48■□□□□ 0.87
CTDSPL2-209ENST00000560620 AFAP1Q8N556 730 aa20.47■□□□□ 0.87
CTDSPL2-209ENST00000560620 ZNF518AQ6AHZ1 1483 aa20.47■□□□□ 0.87
CTDSPL2-209ENST00000560620 ZMYM4Q5VZL5 1548 aa20.47■□□□□ 0.87
CTDSPL2-209ENST00000560620 ARHGEF40Q8TER5 1519 aa20.47■□□□□ 0.87
CTDSPL2-209ENST00000560620 GPATCH8Q9UKJ3 1502 aaKnown RBP20.46■□□□□ 0.87
CTDSPL2-209ENST00000560620 TIAM1Q13009 1591 aa20.46■□□□□ 0.87
CTDSPL2-209ENST00000560620 YEATS2Q9ULM3 1422 aa20.44■□□□□ 0.86
CTDSPL2-209ENST00000560620 MAGI2Q86UL8 1455 aa20.44■□□□□ 0.86
CTDSPL2-209ENST00000560620 APLP2Q06481 763 aa20.44■□□□□ 0.86
CTDSPL2-209ENST00000560620 ABCC1P33527 1531 aa20.43■□□□□ 0.86
CTDSPL2-209ENST00000560620 SUPT6HQ7KZ85 1726 aaKnown RBP20.42■□□□□ 0.86
CTDSPL2-209ENST00000560620 ITSN2Q9NZM3 1697 aa20.41■□□□□ 0.86
CTDSPL2-209ENST00000560620 SAMD9LQ8IVG5 1584 aa20.39■□□□□ 0.85
CTDSPL2-209ENST00000560620 ARHGEF12Q9NZN5 1544 aa20.39■□□□□ 0.85
CTDSPL2-209ENST00000560620 TRAPPC8Q9Y2L5 1435 aa20.39■□□□□ 0.85
CTDSPL2-209ENST00000560620 HNRNPMP52272 730 aaKnown RBP eCLIP20.39■□□□□ 0.852e-13■■■■■ 135.8
CTDSPL2-209ENST00000560620 SYCP2Q9BX26 1530 aa20.38■□□□□ 0.85
CTDSPL2-209ENST00000560620 NCOA2Q15596 1464 aa20.38■□□□□ 0.85
CTDSPL2-209ENST00000560620 KDM5CP41229 1560 aa20.38■□□□□ 0.85
CTDSPL2-209ENST00000560620 HECW2Q9P2P5 1572 aa20.38■□□□□ 0.85
CTDSPL2-209ENST00000560620 LRRC9Q6ZRR7 1453 aa20.37■□□□□ 0.85
CTDSPL2-209ENST00000560620 MLECQ14165 292 aa20.36■□□□□ 0.85
CTDSPL2-209ENST00000560620 ATP10AO60312 1499 aa20.36■□□□□ 0.85
CTDSPL2-209ENST00000560620 PLEKHH2Q8IVE3 1493 aa20.36■□□□□ 0.85
CTDSPL2-209ENST00000560620 KANK4Q5T7N3 995 aaPredicted RBP20.35■□□□□ 0.85
CTDSPL2-209ENST00000560620 BCORL1Q5H9F3 1711 aa20.35■□□□□ 0.85
CTDSPL2-209ENST00000560620 MAP3K1Q13233 1512 aa20.34■□□□□ 0.85
CTDSPL2-209ENST00000560620 C9orf84Q5VXU9 1444 aa20.34■□□□□ 0.85
CTDSPL2-209ENST00000560620 ZNF644Q9H582 1327 aaPredicted RBP20.33■□□□□ 0.85
CTDSPL2-209ENST00000560620 MLH3Q9UHC1 1453 aa20.32■□□□□ 0.84
CTDSPL2-209ENST00000560620 ADAMTSL3P82987 1691 aa20.32■□□□□ 0.84
CTDSPL2-209ENST00000560620 SPAG9O60271 1321 aaKnown RBP20.31■□□□□ 0.84
CTDSPL2-209ENST00000560620 KIAA1107Q9UPP5 1409 aa20.31■□□□□ 0.84
CTDSPL2-209ENST00000560620 SIGLEC1Q9BZZ2 1709 aa20.3■□□□□ 0.84
CTDSPL2-209ENST00000560620 DIP2CQ9Y2E4 1556 aa20.29■□□□□ 0.84
CTDSPL2-209ENST00000560620 ABCA6Q8N139 1617 aa20.29■□□□□ 0.84
CTDSPL2-209ENST00000560620 MADDQ8WXG6 1647 aa20.29■□□□□ 0.84
CTDSPL2-209ENST00000560620 PLPPR3Q6T4P5 718 aa20.28■□□□□ 0.84
CTDSPL2-209ENST00000560620 KIDINS220Q9ULH0 1771 aa20.26■□□□□ 0.83
CTDSPL2-209ENST00000560620 PTPRMP28827 1452 aa20.26■□□□□ 0.83
CTDSPL2-209ENST00000560620 RIMS1Q86UR5 1692 aaKnown RBP20.26■□□□□ 0.83
CTDSPL2-209ENST00000560620 CAMSAP2Q08AD1 1489 aa20.25■□□□□ 0.83
CTDSPL2-209ENST00000560620 ATP7AQ04656 1500 aa20.23■□□□□ 0.83
CTDSPL2-209ENST00000560620 FER1L4A9Z1Z3 1794 aa20.21■□□□□ 0.83
CTDSPL2-209ENST00000560620 MYOM3Q5VTT5 1437 aa20.21■□□□□ 0.83
CTDSPL2-209ENST00000560620 MBD5Q9P267 1494 aa20.2■□□□□ 0.82
CTDSPL2-209ENST00000560620 ESF1Q9H501 851 aaKnown RBP20.2■□□□□ 0.82
CTDSPL2-209ENST00000560620 REREQ9P2R6 1566 aa20.2■□□□□ 0.82
CTDSPL2-209ENST00000560620 INO80Q9ULG1 1556 aaPredicted RBP20.2■□□□□ 0.82
CTDSPL2-209ENST00000560620 CCDC141Q6ZP82 1450 aa20.19■□□□□ 0.82
CTDSPL2-209ENST00000560620 RSPH4AQ5TD94 716 aa20.19■□□□□ 0.82
CTDSPL2-209ENST00000560620 TSPY4P0CV99 314 aa20.17■□□□□ 0.82
CTDSPL2-209ENST00000560620 TSPY10P0CW01 314 aa20.17■□□□□ 0.82
CTDSPL2-209ENST00000560620 MIA2Q96PC5 1412 aa20.16■□□□□ 0.82
CTDSPL2-209ENST00000560620 A2MP01023 1474 aa20.15■□□□□ 0.82
CTDSPL2-209ENST00000560620 AGLP35573 1532 aa20.15■□□□□ 0.82
CTDSPL2-209ENST00000560620 RTEL1-TNFRSF6BF6WH68 1400 aa20.13■□□□□ 0.81
CTDSPL2-209ENST00000560620 ADGBQ8N7X0 1667 aa20.13■□□□□ 0.81
CTDSPL2-209ENST00000560620 ARHGEF5Q12774 1597 aa20.12■□□□□ 0.81
CTDSPL2-209ENST00000560620 CEBPAP49715 358 aaPredicted RBP20.1■□□□□ 0.81
CTDSPL2-209ENST00000560620 GGT6Q6P531 493 aa20.1■□□□□ 0.81
CTDSPL2-209ENST00000560620 PTPN23Q9H3S7 1636 aa20.09■□□□□ 0.81
CTDSPL2-209ENST00000560620 PLXNC1O60486 1568 aa20.08■□□□□ 0.8
CTDSPL2-209ENST00000560620 FGD6Q6ZV73 1430 aa20.07■□□□□ 0.8
CTDSPL2-209ENST00000560620 PPARGC1BQ86YN6 1023 aaKnown RBP20.06■□□□□ 0.8
CTDSPL2-209ENST00000560620 DHX29Q7Z478 1369 aaKnown RBP20.06■□□□□ 0.8
CTDSPL2-209ENST00000560620 KIF3BO15066 747 aa20.04■□□□□ 0.8
CTDSPL2-209ENST00000560620 FAM50AQ14320 339 aaKnown RBP20.04■□□□□ 0.8
CTDSPL2-209ENST00000560620 CNTLNQ9NXG0 1405 aa20.03■□□□□ 0.8
CTDSPL2-209ENST00000560620 MAST1Q9Y2H9 1570 aa20.01■□□□□ 0.79
CTDSPL2-209ENST00000560620 C3P01024 1663 aa20■□□□□ 0.79
CTDSPL2-209ENST00000560620 TCOF1Q13428 1488 aaKnown RBP19.99■□□□□ 0.79
CTDSPL2-209ENST00000560620 LMTK3Q96Q04 1460 aa19.99■□□□□ 0.79
CTDSPL2-209ENST00000560620 CLTCQ00610 1675 aaKnown RBP19.99■□□□□ 0.79
CTDSPL2-209ENST00000560620 DAPK1P53355 1430 aa19.98■□□□□ 0.79
CTDSPL2-209ENST00000560620 CROCC2H7BZ55 1655 aa19.97■□□□□ 0.79
CTDSPL2-209ENST00000560620 ABCC5O15440 1437 aa19.97■□□□□ 0.79
CTDSPL2-209ENST00000560620 HSPA2P54652 639 aa19.97■□□□□ 0.79
CTDSPL2-209ENST00000560620 CHIC2Q9UKJ5 165 aa19.97■□□□□ 0.79
CTDSPL2-209ENST00000560620 DNMT1P26358 1616 aaKnown RBP19.97■□□□□ 0.79
CTDSPL2-209ENST00000560620 ZMYM3Q14202 1370 aa19.96■□□□□ 0.79
CTDSPL2-209ENST00000560620 RRP7BPQ9NSQ0 103 aa19.96■□□□□ 0.79
CTDSPL2-209ENST00000560620 PPP6R1Q9UPN7 881 aa19.96■□□□□ 0.79
CTDSPL2-209ENST00000560620 MROH2AA6NES4 1674 aa19.96■□□□□ 0.79
CTDSPL2-209ENST00000560620 PREX1Q8TCU6 1659 aa19.96■□□□□ 0.79
CTDSPL2-209ENST00000560620 SHANK2Q9UPX8 1470 aa19.95■□□□□ 0.78
CTDSPL2-209ENST00000560620 WASHC2CQ9Y4E1 1318 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms