RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 PLCH2O75038 1416 aa16.05■□□□□ 0.16
HERC1-209ENST00000560519 YEATS2Q9ULM3 1422 aa16.04■□□□□ 0.16
HERC1-209ENST00000560519 LRRIQ1Q96JM4 1722 aa16.04■□□□□ 0.16
HERC1-209ENST00000560519 ZNF518AQ6AHZ1 1483 aa16.03■□□□□ 0.16
HERC1-209ENST00000560519 C9orf84Q5VXU9 1444 aa16.03■□□□□ 0.16
HERC1-209ENST00000560519 KDM5CP41229 1560 aa16.03■□□□□ 0.16
HERC1-209ENST00000560519 ARHGEF12Q9NZN5 1544 aa16.03■□□□□ 0.16
HERC1-209ENST00000560519 CLIP1P30622 1438 aa16.02■□□□□ 0.16
HERC1-209ENST00000560519 SCAPERQ9BY12 1400 aa16.02■□□□□ 0.15
HERC1-209ENST00000560519 ARHGAP5Q13017 1502 aa16.01■□□□□ 0.15
HERC1-209ENST00000560519 PREX2Q70Z35 1606 aa16.01■□□□□ 0.15
HERC1-209ENST00000560519 REREQ9P2R6 1566 aa16■□□□□ 0.15
HERC1-209ENST00000560519 ARHGAP35Q9NRY4 1499 aa16■□□□□ 0.15
HERC1-209ENST00000560519 ATP10AO60312 1499 aa15.99■□□□□ 0.15
HERC1-209ENST00000560519 CDK11AQ9UQ88 783 aaPredicted RBP15.99■□□□□ 0.15
HERC1-209ENST00000560519 TROQ12816 1431 aaPredicted RBP15.98■□□□□ 0.15
HERC1-209ENST00000560519 CDC42BPBQ9Y5S2 1711 aa15.98■□□□□ 0.15
HERC1-209ENST00000560519 ITSN2Q9NZM3 1697 aa15.97■□□□□ 0.15
HERC1-209ENST00000560519 CCDC18Q5T9S5 1454 aa15.97■□□□□ 0.15
HERC1-209ENST00000560519 DIP2CQ9Y2E4 1556 aa15.96■□□□□ 0.15
HERC1-209ENST00000560519 ABCA6Q8N139 1617 aa15.95■□□□□ 0.14
HERC1-209ENST00000560519 ABCC1P33527 1531 aa15.94■□□□□ 0.14
HERC1-209ENST00000560519 EFCAB2Q5VUJ9 269 aa15.94■□□□□ 0.14
HERC1-209ENST00000560519 UBTFP17480 764 aaKnown RBP15.93■□□□□ 0.14
HERC1-209ENST00000560519 C3P01024 1663 aa15.92■□□□□ 0.14
HERC1-209ENST00000560519 CDC42BPAQ5VT25 1732 aa15.92■□□□□ 0.14
HERC1-209ENST00000560519 ATP1B4Q9UN42 357 aaPredicted RBP15.91■□□□□ 0.14
HERC1-209ENST00000560519 MLH3Q9UHC1 1453 aa15.9■□□□□ 0.14
HERC1-209ENST00000560519 UHRF1BP1Q6BDS2 1440 aa15.89■□□□□ 0.13
HERC1-209ENST00000560519 MLECQ14165 292 aa15.89■□□□□ 0.13
HERC1-209ENST00000560519 PLPPR3Q6T4P5 718 aa15.89■□□□□ 0.13
HERC1-209ENST00000560519 MROH2AA6NES4 1674 aa15.89■□□□□ 0.13
HERC1-209ENST00000560519 AGLP35573 1532 aa15.89■□□□□ 0.13
HERC1-209ENST00000560519 STRCQ7RTU9 1775 aa15.88■□□□□ 0.13
HERC1-209ENST00000560519 HSPA2P54652 639 aa15.88■□□□□ 0.13
HERC1-209ENST00000560519 FYCO1Q9BQS8 1478 aa15.87■□□□□ 0.13
HERC1-209ENST00000560519 KIDINS220Q9ULH0 1771 aa15.86■□□□□ 0.13
HERC1-209ENST00000560519 CASKIN1Q8WXD9 1431 aa15.85■□□□□ 0.13
HERC1-209ENST00000560519 SETD1BQ9UPS6 1966 aaKnown RBP15.84■□□□□ 0.13
HERC1-209ENST00000560519 MYT1LQ9UL68 1186 aa15.82■□□□□ 0.12
HERC1-209ENST00000560519 CNTLNQ9NXG0 1405 aa15.82■□□□□ 0.12
HERC1-209ENST00000560519 SAMD9LQ8IVG5 1584 aa15.81■□□□□ 0.12
HERC1-209ENST00000560519 CERKQ8TCT0 537 aa15.81■□□□□ 0.12
HERC1-209ENST00000560519 EHMT2Q96KQ7 1210 aa15.81■□□□□ 0.12
HERC1-209ENST00000560519 DMRT2Q9Y5R5 561 aa15.81■□□□□ 0.12
HERC1-209ENST00000560519 SUPT6HQ7KZ85 1726 aaKnown RBP15.8■□□□□ 0.12
HERC1-209ENST00000560519 SYCP2Q9BX26 1530 aa15.79■□□□□ 0.12
HERC1-209ENST00000560519 ZNF142P52746 1687 aaPredicted RBP15.79■□□□□ 0.12
HERC1-209ENST00000560519 INO80Q9ULG1 1556 aaPredicted RBP15.79■□□□□ 0.12
HERC1-209ENST00000560519 AFAP1Q8N556 730 aa15.78■□□□□ 0.12
HERC1-209ENST00000560519 ESF1Q9H501 851 aaKnown RBP15.78■□□□□ 0.12
HERC1-209ENST00000560519 TRAPPC8Q9Y2L5 1435 aa15.77■□□□□ 0.12
HERC1-209ENST00000560519 ADGBQ8N7X0 1667 aa15.76■□□□□ 0.11
HERC1-209ENST00000560519 PLXNC1O60486 1568 aa15.76■□□□□ 0.11
HERC1-209ENST00000560519 ATP7AQ04656 1500 aa15.76■□□□□ 0.11
HERC1-209ENST00000560519 PLEKHH2Q8IVE3 1493 aa15.76■□□□□ 0.11
HERC1-209ENST00000560519 PTPRTO14522 1441 aa15.76■□□□□ 0.11
HERC1-209ENST00000560519 MYO3AQ8NEV4 1616 aa15.76■□□□□ 0.11
HERC1-209ENST00000560519 CLTCQ00610 1675 aaKnown RBP15.75■□□□□ 0.11
HERC1-209ENST00000560519 IQSEC2Q5JU85 1478 aa15.74■□□□□ 0.11
HERC1-209ENST00000560519 CEBPAP49715 358 aaPredicted RBP15.74■□□□□ 0.11
HERC1-209ENST00000560519 NPATQ14207 1427 aa15.74■□□□□ 0.11
HERC1-209ENST00000560519 CHIC1Q5VXU3 224 aa15.72■□□□□ 0.11
HERC1-209ENST00000560519 NCOA1Q15788 1441 aa15.7■□□□□ 0.1
HERC1-209ENST00000560519 GPATCH8Q9UKJ3 1502 aaKnown RBP15.7■□□□□ 0.1
HERC1-209ENST00000560519 CAMSAP1Q5T5Y3 1602 aa15.7■□□□□ 0.1
HERC1-209ENST00000560519 KIAA1107Q9UPP5 1409 aa15.69■□□□□ 0.1
HERC1-209ENST00000560519 EHBP1L1Q8N3D4 1523 aa15.69■□□□□ 0.1
HERC1-209ENST00000560519 SPATA31D1Q6ZQQ2 1576 aa15.69■□□□□ 0.1
HERC1-209ENST00000560519 CEP170BQ9Y4F5 1589 aaPredicted RBP15.68■□□□□ 0.1
HERC1-209ENST00000560519 LTBP4Q8N2S1 1624 aa15.68■□□□□ 0.1
HERC1-209ENST00000560519 TIAM1Q13009 1591 aa15.67■□□□□ 0.1
HERC1-209ENST00000560519 A2MP01023 1474 aa15.67■□□□□ 0.1
HERC1-209ENST00000560519 SPAG9O60271 1321 aaKnown RBP15.67■□□□□ 0.1
HERC1-209ENST00000560519 POLR1AO95602 1720 aaPredicted RBP15.65■□□□□ 0.1
HERC1-209ENST00000560519 PLA2R1Q13018 1463 aa15.65■□□□□ 0.1
HERC1-209ENST00000560519 MTUS2Q5JR59 1369 aa15.64■□□□□ 0.09
HERC1-209ENST00000560519 CCNB3Q8WWL7 1395 aa15.64■□□□□ 0.09
HERC1-209ENST00000560519 FAM135AQ9P2D6 1515 aa15.64■□□□□ 0.09
HERC1-209ENST00000560519 ZNF777Q9ULD5 760 aaPredicted RBP15.63■□□□□ 0.09
HERC1-209ENST00000560519 ZMYM3Q14202 1370 aa15.62■□□□□ 0.09
HERC1-209ENST00000560519 CFDP1Q9UEE9 299 aaPredicted RBP15.6■□□□□ 0.09
HERC1-209ENST00000560519 DISP3Q9P2K9 1392 aa15.59■□□□□ 0.09
HERC1-209ENST00000560519 RTEL1-TNFRSF6BF6WH68 1400 aa15.58■□□□□ 0.08
HERC1-209ENST00000560519 TCOF1Q13428 1488 aaKnown RBP15.58■□□□□ 0.08
HERC1-209ENST00000560519 KDM5DQ9BY66 1539 aa15.58■□□□□ 0.08
HERC1-209ENST00000560519 HNRNPMP52272 730 aaKnown RBP eCLIP15.57■□□□□ 0.08
HERC1-209ENST00000560519 PTPRKQ15262 1439 aa15.57■□□□□ 0.08
HERC1-209ENST00000560519 PPP6R1Q9UPN7 881 aa15.56■□□□□ 0.08
HERC1-209ENST00000560519 CEP162Q5TB80 1403 aa15.56■□□□□ 0.08
HERC1-209ENST00000560519 DNMT1P26358 1616 aaKnown RBP15.56■□□□□ 0.08
HERC1-209ENST00000560519 ZC3H13Q5T200 1668 aaKnown RBP15.56■□□□□ 0.08
HERC1-209ENST00000560519 CCDC141Q6ZP82 1450 aa15.55■□□□□ 0.08
HERC1-209ENST00000560519 A2ML1A8K2U0 1454 aa15.54■□□□□ 0.08
HERC1-209ENST00000560519 MBD5Q9P267 1494 aa15.54■□□□□ 0.08
HERC1-209ENST00000560519 PKD2Q13563 968 aa15.54■□□□□ 0.08
HERC1-209ENST00000560519 CAMSAP2Q08AD1 1489 aa15.52■□□□□ 0.08
HERC1-209ENST00000560519 ARHGEF5Q12774 1597 aa15.52■□□□□ 0.07
HERC1-209ENST00000560519 GGT6Q6P531 493 aa15.51■□□□□ 0.07
HERC1-209ENST00000560519 PZPP20742 1482 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms