RNA–Protein interactions for RNA: ENST00000560448.5

PKNOX1-209, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 5

Gene PKNOX1, Length 1,429 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-209ENST00000560448 CCNB3Q8WWL7 1395 aa21.91■■□□□ 1.1
PKNOX1-209ENST00000560448 COL17A1Q9UMD9 1497 aaPredicted RBP21.91■■□□□ 1.1
PKNOX1-209ENST00000560448 CDC42BPAQ5VT25 1732 aa21.9■■□□□ 1.1
PKNOX1-209ENST00000560448 CDC42BPBQ9Y5S2 1711 aa21.9■■□□□ 1.1
PKNOX1-209ENST00000560448 ITSN2Q9NZM3 1697 aa21.9■■□□□ 1.1
PKNOX1-209ENST00000560448 GPATCH8Q9UKJ3 1502 aaKnown RBP21.9■■□□□ 1.1
PKNOX1-209ENST00000560448 DENND4BO75064 1496 aaPredicted RBP21.88■■□□□ 1.09
PKNOX1-209ENST00000560448 ADGRL1O94910 1474 aa21.88■■□□□ 1.09
PKNOX1-209ENST00000560448 NCOA2Q15596 1464 aa21.87■■□□□ 1.09
PKNOX1-209ENST00000560448 PLEKHH2Q8IVE3 1493 aa21.84■■□□□ 1.09
PKNOX1-209ENST00000560448 CFDP1Q9UEE9 299 aaPredicted RBP21.83■■□□□ 1.09
PKNOX1-209ENST00000560448 SCAPERQ9BY12 1400 aa21.82■■□□□ 1.08
PKNOX1-209ENST00000560448 POGZQ7Z3K3 1410 aa21.82■■□□□ 1.08
PKNOX1-209ENST00000560448 KANK4Q5T7N3 995 aaPredicted RBP21.81■■□□□ 1.08
PKNOX1-209ENST00000560448 RICTORQ6R327 1708 aa21.81■■□□□ 1.08
PKNOX1-209ENST00000560448 ZNF518AQ6AHZ1 1483 aa21.81■■□□□ 1.08
PKNOX1-209ENST00000560448 ABCC1P33527 1531 aa21.81■■□□□ 1.08
PKNOX1-209ENST00000560448 MAGI2Q86UL8 1455 aa21.8■■□□□ 1.08
PKNOX1-209ENST00000560448 KIAA1107Q9UPP5 1409 aa21.8■■□□□ 1.08
PKNOX1-209ENST00000560448 ZMYM4Q5VZL5 1548 aa21.8■■□□□ 1.08
PKNOX1-209ENST00000560448 FRMPD1Q5SYB0 1578 aa21.79■■□□□ 1.08
PKNOX1-209ENST00000560448 MIA2Q96PC5 1412 aa21.77■■□□□ 1.08
PKNOX1-209ENST00000560448 RAPGEF3O95398 923 aa21.76■■□□□ 1.07
PKNOX1-209ENST00000560448 SAMD9LQ8IVG5 1584 aa21.76■■□□□ 1.07
PKNOX1-209ENST00000560448 KDM5CP41229 1560 aa21.74■■□□□ 1.07
PKNOX1-209ENST00000560448 MYOM3Q5VTT5 1437 aa21.74■■□□□ 1.07
PKNOX1-209ENST00000560448 RSPH4AQ5TD94 716 aa21.72■■□□□ 1.07
PKNOX1-209ENST00000560448 ZNF777Q9ULD5 760 aaPredicted RBP21.72■■□□□ 1.07
PKNOX1-209ENST00000560448 SYCP2Q9BX26 1530 aa21.7■■□□□ 1.06
PKNOX1-209ENST00000560448 ARHGEF40Q8TER5 1519 aa21.69■■□□□ 1.06
PKNOX1-209ENST00000560448 MLH3Q9UHC1 1453 aa21.69■■□□□ 1.06
PKNOX1-209ENST00000560448 ARHGEF12Q9NZN5 1544 aa21.69■■□□□ 1.06
PKNOX1-209ENST00000560448 ZFYVE16Q7Z3T8 1539 aa21.68■■□□□ 1.06
PKNOX1-209ENST00000560448 HECW2Q9P2P5 1572 aa21.67■■□□□ 1.06
PKNOX1-209ENST00000560448 CAMSAP2Q08AD1 1489 aa21.67■■□□□ 1.06
PKNOX1-209ENST00000560448 TRAPPC8Q9Y2L5 1435 aa21.66■■□□□ 1.06
PKNOX1-209ENST00000560448 MBD5Q9P267 1494 aa21.65■■□□□ 1.06
PKNOX1-209ENST00000560448 AFAP1Q8N556 730 aa21.64■■□□□ 1.06
PKNOX1-209ENST00000560448 ARHGEF5Q12774 1597 aa21.64■■□□□ 1.05
PKNOX1-209ENST00000560448 AEBP2Q6ZN18 517 aaPredicted RBP21.63■■□□□ 1.05
PKNOX1-209ENST00000560448 CCDC141Q6ZP82 1450 aa21.62■■□□□ 1.05
PKNOX1-209ENST00000560448 HNRNPMP52272 730 aaKnown RBP eCLIP21.62■■□□□ 1.05
PKNOX1-209ENST00000560448 FGD6Q6ZV73 1430 aa21.62■■□□□ 1.05
PKNOX1-209ENST00000560448 ZNF644Q9H582 1327 aaPredicted RBP21.6■■□□□ 1.05
PKNOX1-209ENST00000560448 RTEL1-TNFRSF6BF6WH68 1400 aa21.6■■□□□ 1.05
PKNOX1-209ENST00000560448 ATP10AO60312 1499 aa21.59■■□□□ 1.05
PKNOX1-209ENST00000560448 TCOF1Q13428 1488 aaKnown RBP21.59■■□□□ 1.05
PKNOX1-209ENST00000560448 SPAG9O60271 1321 aaKnown RBP21.59■■□□□ 1.05
PKNOX1-209ENST00000560448 REREQ9P2R6 1566 aa21.59■■□□□ 1.05
PKNOX1-209ENST00000560448 C9orf84Q5VXU9 1444 aa21.58■■□□□ 1.05
PKNOX1-209ENST00000560448 YEATS2Q9ULM3 1422 aa21.58■■□□□ 1.05
PKNOX1-209ENST00000560448 PTPN23Q9H3S7 1636 aa21.58■■□□□ 1.05
PKNOX1-209ENST00000560448 INO80Q9ULG1 1556 aaPredicted RBP21.57■■□□□ 1.04
PKNOX1-209ENST00000560448 ATP7AQ04656 1500 aa21.57■■□□□ 1.04
PKNOX1-209ENST00000560448 KIDINS220Q9ULH0 1771 aa21.56■■□□□ 1.04
PKNOX1-209ENST00000560448 MYT1LQ9UL68 1186 aa21.55■■□□□ 1.04
PKNOX1-209ENST00000560448 DIP2CQ9Y2E4 1556 aa21.55■■□□□ 1.04
PKNOX1-209ENST00000560448 TSPY4P0CV99 314 aa21.55■■□□□ 1.04
PKNOX1-209ENST00000560448 TSPY10P0CW01 314 aa21.55■■□□□ 1.04
PKNOX1-209ENST00000560448 ABCA6Q8N139 1617 aa21.52■■□□□ 1.04
PKNOX1-209ENST00000560448 MAST1Q9Y2H9 1570 aa21.52■■□□□ 1.04
PKNOX1-209ENST00000560448 SHANK2Q9UPX8 1470 aa21.51■■□□□ 1.03
PKNOX1-209ENST00000560448 AGLP35573 1532 aa21.51■■□□□ 1.03
PKNOX1-209ENST00000560448 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.5■■□□□ 1.03
PKNOX1-209ENST00000560448 ADGBQ8N7X0 1667 aa21.49■■□□□ 1.03
PKNOX1-209ENST00000560448 DNMT1P26358 1616 aaKnown RBP21.48■■□□□ 1.03
PKNOX1-209ENST00000560448 ARID4BQ4LE39 1312 aaPredicted RBP21.47■■□□□ 1.03
PKNOX1-209ENST00000560448 BCORL1Q5H9F3 1711 aa21.46■■□□□ 1.03
PKNOX1-209ENST00000560448 CROCC2H7BZ55 1655 aa21.45■■□□□ 1.02
PKNOX1-209ENST00000560448 PLXNC1O60486 1568 aa21.45■■□□□ 1.02
PKNOX1-209ENST00000560448 A2MP01023 1474 aa21.45■■□□□ 1.02
PKNOX1-209ENST00000560448 DAPK1P53355 1430 aa21.45■■□□□ 1.02
PKNOX1-209ENST00000560448 ABCC5O15440 1437 aa21.43■■□□□ 1.02
PKNOX1-209ENST00000560448 ADAMTSL3P82987 1691 aa21.42■■□□□ 1.02
PKNOX1-209ENST00000560448 RRBP1Q9P2E9 1410 aaKnown RBP21.41■■□□□ 1.02
PKNOX1-209ENST00000560448 KDM4FA0A1W2PPD8 638 aa21.41■■□□□ 1.02
PKNOX1-209ENST00000560448 DHX29Q7Z478 1369 aaKnown RBP21.4■■□□□ 1.02
PKNOX1-209ENST00000560448 SIGLEC1Q9BZZ2 1709 aa21.39■■□□□ 1.02
PKNOX1-209ENST00000560448 FAM50AQ14320 339 aaKnown RBP21.39■■□□□ 1.02
PKNOX1-209ENST00000560448 PPARGC1BQ86YN6 1023 aaKnown RBP21.38■■□□□ 1.01
PKNOX1-209ENST00000560448 ANKRD30AQ9BXX3 1397 aa21.36■■□□□ 1.01
PKNOX1-209ENST00000560448 ADGRL2O95490 1459 aa21.36■■□□□ 1.01
PKNOX1-209ENST00000560448 PPP6R1Q9UPN7 881 aa21.36■■□□□ 1.01
PKNOX1-209ENST00000560448 DUOX2Q9NRD8 1548 aa21.35■■□□□ 1.01
PKNOX1-209ENST00000560448 FAM135AQ9P2D6 1515 aa21.33■■□□□ 1.01
PKNOX1-209ENST00000560448 EIF2AK4Q9P2K8 1649 aaKnown RBP21.33■■□□□ 1.01
PKNOX1-209ENST00000560448 ERBINQ96RT1 1412 aa21.32■■□□□ 1
PKNOX1-209ENST00000560448 CNTLNQ9NXG0 1405 aa21.32■■□□□ 1
PKNOX1-209ENST00000560448 KIF15Q9NS87 1388 aa21.31■■□□□ 1
PKNOX1-209ENST00000560448 MADDQ8WXG6 1647 aa21.31■■□□□ 1
PKNOX1-209ENST00000560448 NCOA1Q15788 1441 aa21.31■■□□□ 1
PKNOX1-209ENST00000560448 ROCK1Q13464 1354 aa21.31■■□□□ 1
PKNOX1-209ENST00000560448 FER1L4A9Z1Z3 1794 aa21.31■■□□□ 1
PKNOX1-209ENST00000560448 ESF1Q9H501 851 aaKnown RBP21.28■■□□□ 1
PKNOX1-209ENST00000560448 PTPRMP28827 1452 aa21.28■■□□□ 1
PKNOX1-209ENST00000560448 MLECQ14165 292 aa21.27■■□□□ 1
PKNOX1-209ENST00000560448 KIF3BO15066 747 aa21.25■□□□□ 0.99
PKNOX1-209ENST00000560448 RIMS1Q86UR5 1692 aaKnown RBP21.25■□□□□ 0.99
PKNOX1-209ENST00000560448 RNF17Q9BXT8 1623 aaKnown RBP21.24■□□□□ 0.99
PKNOX1-209ENST00000560448 MROH2AA6NES4 1674 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms