RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CCNB3Q8WWL7 1395 aa34.06■■■■□ 3.04
SNX1-210ENST00000560260 CFAP74Q9C0B2 1584 aa34.06■■■■□ 3.04
SNX1-210ENST00000560260 COL17A1Q9UMD9 1497 aaPredicted RBP34.04■■■■□ 3.04
SNX1-210ENST00000560260 ITSN2Q9NZM3 1697 aa34.03■■■■□ 3.04
SNX1-210ENST00000560260 KDM6BO15054 1643 aa34.02■■■■□ 3.04
SNX1-210ENST00000560260 AKNAQ7Z591 1439 aa34■■■■□ 3.03
SNX1-210ENST00000560260 EFCAB2Q5VUJ9 269 aa33.96■■■■□ 3.03
SNX1-210ENST00000560260 SAMD9LQ8IVG5 1584 aa33.96■■■■□ 3.03
SNX1-210ENST00000560260 PHLDB1Q86UU1 1377 aa33.95■■■■□ 3.03
SNX1-210ENST00000560260 PPARGC1BQ86YN6 1023 aaKnown RBP33.95■■■■□ 3.03
SNX1-210ENST00000560260 ADGRL1O94910 1474 aa33.92■■■■□ 3.02
SNX1-210ENST00000560260 ABCC1P33527 1531 aa33.92■■■■□ 3.02
SNX1-210ENST00000560260 MYOM3Q5VTT5 1437 aa33.91■■■■□ 3.02
SNX1-210ENST00000560260 FRMPD1Q5SYB0 1578 aa33.91■■■■□ 3.02
SNX1-210ENST00000560260 CFDP1Q9UEE9 299 aaPredicted RBP33.9■■■■□ 3.02
SNX1-210ENST00000560260 ARHGEF12Q9NZN5 1544 aa33.88■■■■□ 3.01
SNX1-210ENST00000560260 SCAPERQ9BY12 1400 aa33.85■■■■□ 3.01
SNX1-210ENST00000560260 RICTORQ6R327 1708 aa33.85■■■■□ 3.01
SNX1-210ENST00000560260 ZNF777Q9ULD5 760 aaPredicted RBP33.84■■■■□ 3.01
SNX1-210ENST00000560260 DENND4BO75064 1496 aaPredicted RBP33.84■■■■□ 3.01
SNX1-210ENST00000560260 ZNF644Q9H582 1327 aaPredicted RBP33.83■■■■□ 3.01
SNX1-210ENST00000560260 SYCP2Q9BX26 1530 aa33.83■■■■□ 3.01
SNX1-210ENST00000560260 CAMSAP2Q08AD1 1489 aa33.81■■■■□ 3
SNX1-210ENST00000560260 POGZQ7Z3K3 1410 aa33.81■■■■□ 3
SNX1-210ENST00000560260 MIA2Q96PC5 1412 aa33.8■■■■□ 3
SNX1-210ENST00000560260 RAPGEF3O95398 923 aa33.79■■■■□ 3
SNX1-210ENST00000560260 FGD6Q6ZV73 1430 aa33.78■■■■□ 3
SNX1-210ENST00000560260 TRAPPC8Q9Y2L5 1435 aa33.77■■■■□ 3
SNX1-210ENST00000560260 PLEKHH2Q8IVE3 1493 aa33.76■■■■□ 3
SNX1-210ENST00000560260 KIAA1107Q9UPP5 1409 aa33.76■■■□□ 2.99
SNX1-210ENST00000560260 PTPN23Q9H3S7 1636 aa33.75■■■□□ 2.99
SNX1-210ENST00000560260 KDM5CP41229 1560 aa33.72■■■□□ 2.99
SNX1-210ENST00000560260 MBD5Q9P267 1494 aa33.72■■■□□ 2.99
SNX1-210ENST00000560260 ZMYM4Q5VZL5 1548 aa33.72■■■□□ 2.99
SNX1-210ENST00000560260 TCOF1Q13428 1488 aaKnown RBP33.7■■■□□ 2.99
SNX1-210ENST00000560260 HNRNPMP52272 730 aaKnown RBP eCLIP33.7■■■□□ 2.99
SNX1-210ENST00000560260 ZNF518AQ6AHZ1 1483 aa33.7■■■□□ 2.98
SNX1-210ENST00000560260 AFAP1Q8N556 730 aa33.66■■■□□ 2.98
SNX1-210ENST00000560260 ARHGEF5Q12774 1597 aa33.64■■■□□ 2.98
SNX1-210ENST00000560260 HECW2Q9P2P5 1572 aa33.61■■■□□ 2.97
SNX1-210ENST00000560260 CCDC141Q6ZP82 1450 aa33.6■■■□□ 2.97
SNX1-210ENST00000560260 ARHGEF40Q8TER5 1519 aa33.59■■■□□ 2.97
SNX1-210ENST00000560260 YEATS2Q9ULM3 1422 aa33.58■■■□□ 2.97
SNX1-210ENST00000560260 INO80Q9ULG1 1556 aaPredicted RBP33.57■■■□□ 2.96
SNX1-210ENST00000560260 ZFYVE16Q7Z3T8 1539 aa33.56■■■□□ 2.96
SNX1-210ENST00000560260 KIDINS220Q9ULH0 1771 aa33.56■■■□□ 2.96
SNX1-210ENST00000560260 MLH3Q9UHC1 1453 aa33.55■■■□□ 2.96
SNX1-210ENST00000560260 MAGI2Q86UL8 1455 aa33.55■■■□□ 2.96
SNX1-210ENST00000560260 RRBP1Q9P2E9 1410 aaKnown RBP33.54■■■□□ 2.96
SNX1-210ENST00000560260 DNMT1P26358 1616 aaKnown RBP33.54■■■□□ 2.96
SNX1-210ENST00000560260 CROCC2H7BZ55 1655 aa33.53■■■□□ 2.96
SNX1-210ENST00000560260 ABCA6Q8N139 1617 aa33.52■■■□□ 2.96
SNX1-210ENST00000560260 ATP7AQ04656 1500 aa33.51■■■□□ 2.95
SNX1-210ENST00000560260 ABCC5O15440 1437 aa33.5■■■□□ 2.95
SNX1-210ENST00000560260 DIP2CQ9Y2E4 1556 aa33.5■■■□□ 2.95
SNX1-210ENST00000560260 FAM50AQ14320 339 aaKnown RBP33.49■■■□□ 2.95
SNX1-210ENST00000560260 DAPK1P53355 1430 aa33.48■■■□□ 2.95
SNX1-210ENST00000560260 SPAG9O60271 1321 aaKnown RBP33.48■■■□□ 2.95
SNX1-210ENST00000560260 MAST1Q9Y2H9 1570 aa33.46■■■□□ 2.95
SNX1-210ENST00000560260 RSPH4AQ5TD94 716 aa33.45■■■□□ 2.95
SNX1-210ENST00000560260 SIGLEC1Q9BZZ2 1709 aa33.44■■■□□ 2.94
SNX1-210ENST00000560260 SHANK2Q9UPX8 1470 aa33.43■■■□□ 2.94
SNX1-210ENST00000560260 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.42■■■□□ 2.94
SNX1-210ENST00000560260 RTEL1-TNFRSF6BF6WH68 1400 aa33.41■■■□□ 2.94
SNX1-210ENST00000560260 C9orf84Q5VXU9 1444 aa33.41■■■□□ 2.94
SNX1-210ENST00000560260 MYT1LQ9UL68 1186 aa33.38■■■□□ 2.93
SNX1-210ENST00000560260 PTPRKQ15262 1439 aa33.38■■■□□ 2.93
SNX1-210ENST00000560260 ATP10AO60312 1499 aa33.38■■■□□ 2.93
SNX1-210ENST00000560260 ADGBQ8N7X0 1667 aa33.37■■■□□ 2.93
SNX1-210ENST00000560260 REREQ9P2R6 1566 aa33.35■■■□□ 2.93
SNX1-210ENST00000560260 TSPY4P0CV99 314 aa33.34■■■□□ 2.93
SNX1-210ENST00000560260 TSPY10P0CW01 314 aa33.34■■■□□ 2.93
SNX1-210ENST00000560260 PLXNC1O60486 1568 aa33.34■■■□□ 2.93
SNX1-210ENST00000560260 ADGRL2O95490 1459 aa33.28■■■□□ 2.92
SNX1-210ENST00000560260 A2MP01023 1474 aa33.27■■■□□ 2.92
SNX1-210ENST00000560260 CHIC2Q9UKJ5 165 aa33.27■■■□□ 2.92
SNX1-210ENST00000560260 ITGAEP38570 1179 aa33.24■■■□□ 2.91
SNX1-210ENST00000560260 AGLP35573 1532 aa33.22■■■□□ 2.91
SNX1-210ENST00000560260 NCOA1Q15788 1441 aa33.21■■■□□ 2.91
SNX1-210ENST00000560260 KIF15Q9NS87 1388 aa33.19■■■□□ 2.9
SNX1-210ENST00000560260 DHX29Q7Z478 1369 aaKnown RBP33.18■■■□□ 2.9
SNX1-210ENST00000560260 BCORL1Q5H9F3 1711 aa33.18■■■□□ 2.9
SNX1-210ENST00000560260 ANKRD30AQ9BXX3 1397 aa33.18■■■□□ 2.9
SNX1-210ENST00000560260 DUOX2Q9NRD8 1548 aa33.16■■■□□ 2.9
SNX1-210ENST00000560260 RRP7BPQ9NSQ0 103 aa33.15■■■□□ 2.9
SNX1-210ENST00000560260 ARID4BQ4LE39 1312 aaPredicted RBP33.15■■■□□ 2.9
SNX1-210ENST00000560260 ROCK1Q13464 1354 aa33.14■■■□□ 2.9
SNX1-210ENST00000560260 ADAMTSL3P82987 1691 aa33.09■■■□□ 2.89
SNX1-210ENST00000560260 EIF2AK4Q9P2K8 1649 aaKnown RBP33.09■■■□□ 2.89
SNX1-210ENST00000560260 ERBINQ96RT1 1412 aa33.07■■■□□ 2.88
SNX1-210ENST00000560260 MLECQ14165 292 aa33.05■■■□□ 2.88
SNX1-210ENST00000560260 MADDQ8WXG6 1647 aa33.04■■■□□ 2.88
SNX1-210ENST00000560260 KDM4FA0A1W2PPD8 638 aa33.03■■■□□ 2.88
SNX1-210ENST00000560260 RNF17Q9BXT8 1623 aaKnown RBP33.02■■■□□ 2.88
SNX1-210ENST00000560260 MROH1Q8NDA8 1641 aa33.01■■■□□ 2.87
SNX1-210ENST00000560260 GCC2Q8IWJ2 1684 aa33.01■■■□□ 2.87
SNX1-210ENST00000560260 ANKRD50Q9ULJ7 1429 aa33■■■□□ 2.87
SNX1-210ENST00000560260 KIF3BO15066 747 aa33■■■□□ 2.87
SNX1-210ENST00000560260 FER1L4A9Z1Z3 1794 aa32.98■■■□□ 2.87
SNX1-210ENST00000560260 NAIPQ13075 1403 aa32.98■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms