RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 FANCAO15360 1455 aa18.79■□□□□ 0.6
RABGGTA-215ENST00000560207 CCNB3Q8WWL7 1395 aa18.79■□□□□ 0.6
RABGGTA-215ENST00000560207 ARHGAP5Q13017 1502 aa18.76■□□□□ 0.59
RABGGTA-215ENST00000560207 NCOA2Q15596 1464 aa18.76■□□□□ 0.59
RABGGTA-215ENST00000560207 GPATCH8Q9UKJ3 1502 aaKnown RBP18.74■□□□□ 0.59
RABGGTA-215ENST00000560207 AKNAQ7Z591 1439 aa18.74■□□□□ 0.59
RABGGTA-215ENST00000560207 PLEKHH2Q8IVE3 1493 aa18.72■□□□□ 0.59
RABGGTA-215ENST00000560207 CFDP1Q9UEE9 299 aaPredicted RBP18.71■□□□□ 0.59
RABGGTA-215ENST00000560207 KANK4Q5T7N3 995 aaPredicted RBP18.7■□□□□ 0.58
RABGGTA-215ENST00000560207 DENND4BO75064 1496 aaPredicted RBP18.69■□□□□ 0.58
RABGGTA-215ENST00000560207 ADGRL1O94910 1474 aa18.69■□□□□ 0.58
RABGGTA-215ENST00000560207 MIA2Q96PC5 1412 aa18.68■□□□□ 0.58
RABGGTA-215ENST00000560207 MYOM3Q5VTT5 1437 aa18.66■□□□□ 0.58
RABGGTA-215ENST00000560207 KIAA1107Q9UPP5 1409 aa18.66■□□□□ 0.58
RABGGTA-215ENST00000560207 RICTORQ6R327 1708 aa18.66■□□□□ 0.58
RABGGTA-215ENST00000560207 RSPH4AQ5TD94 716 aa18.65■□□□□ 0.58
RABGGTA-215ENST00000560207 SCAPERQ9BY12 1400 aa18.65■□□□□ 0.58
RABGGTA-215ENST00000560207 ABCC1P33527 1531 aa18.64■□□□□ 0.58
RABGGTA-215ENST00000560207 ZNF518AQ6AHZ1 1483 aa18.64■□□□□ 0.57
RABGGTA-215ENST00000560207 MAGI2Q86UL8 1455 aa18.63■□□□□ 0.57
RABGGTA-215ENST00000560207 SAMD9LQ8IVG5 1584 aa18.63■□□□□ 0.57
RABGGTA-215ENST00000560207 ZMYM4Q5VZL5 1548 aa18.61■□□□□ 0.57
RABGGTA-215ENST00000560207 COL17A1Q9UMD9 1497 aaPredicted RBP18.61■□□□□ 0.57
RABGGTA-215ENST00000560207 POGZQ7Z3K3 1410 aa18.61■□□□□ 0.57
RABGGTA-215ENST00000560207 ZNF777Q9ULD5 760 aaPredicted RBP18.59■□□□□ 0.57
RABGGTA-215ENST00000560207 KDM5CP41229 1560 aa18.58■□□□□ 0.56
RABGGTA-215ENST00000560207 FRMPD1Q5SYB0 1578 aa18.57■□□□□ 0.56
RABGGTA-215ENST00000560207 CAMSAP2Q08AD1 1489 aa18.57■□□□□ 0.56
RABGGTA-215ENST00000560207 ARHGEF5Q12774 1597 aa18.56■□□□□ 0.56
RABGGTA-215ENST00000560207 SYCP2Q9BX26 1530 aa18.56■□□□□ 0.56
RABGGTA-215ENST00000560207 PTPN23Q9H3S7 1636 aa18.56■□□□□ 0.56
RABGGTA-215ENST00000560207 RAPGEF3O95398 923 aa18.55■□□□□ 0.56
RABGGTA-215ENST00000560207 FGD6Q6ZV73 1430 aa18.55■□□□□ 0.56
RABGGTA-215ENST00000560207 MLH3Q9UHC1 1453 aa18.54■□□□□ 0.56
RABGGTA-215ENST00000560207 HECW2Q9P2P5 1572 aa18.54■□□□□ 0.56
RABGGTA-215ENST00000560207 TCOF1Q13428 1488 aaKnown RBP18.52■□□□□ 0.56
RABGGTA-215ENST00000560207 ARHGEF12Q9NZN5 1544 aa18.52■□□□□ 0.56
RABGGTA-215ENST00000560207 CCDC141Q6ZP82 1450 aa18.52■□□□□ 0.55
RABGGTA-215ENST00000560207 MBD5Q9P267 1494 aa18.52■□□□□ 0.55
RABGGTA-215ENST00000560207 ZFYVE16Q7Z3T8 1539 aa18.51■□□□□ 0.55
RABGGTA-215ENST00000560207 RTEL1-TNFRSF6BF6WH68 1400 aa18.5■□□□□ 0.55
RABGGTA-215ENST00000560207 ARHGEF40Q8TER5 1519 aa18.5■□□□□ 0.55
RABGGTA-215ENST00000560207 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.5■□□□□ 0.55
RABGGTA-215ENST00000560207 TRAPPC8Q9Y2L5 1435 aa18.49■□□□□ 0.55
RABGGTA-215ENST00000560207 TSPY4P0CV99 314 aa18.49■□□□□ 0.55
RABGGTA-215ENST00000560207 TSPY10P0CW01 314 aa18.49■□□□□ 0.55
RABGGTA-215ENST00000560207 HNRNPMP52272 730 aaKnown RBP eCLIP18.49■□□□□ 0.55
RABGGTA-215ENST00000560207 AFAP1Q8N556 730 aa18.49■□□□□ 0.55
RABGGTA-215ENST00000560207 SPAG9O60271 1321 aaKnown RBP18.48■□□□□ 0.55
RABGGTA-215ENST00000560207 ZNF644Q9H582 1327 aaPredicted RBP18.48■□□□□ 0.55
RABGGTA-215ENST00000560207 KIDINS220Q9ULH0 1771 aa18.47■□□□□ 0.55
RABGGTA-215ENST00000560207 INO80Q9ULG1 1556 aaPredicted RBP18.47■□□□□ 0.55
RABGGTA-215ENST00000560207 MAST1Q9Y2H9 1570 aa18.47■□□□□ 0.55
RABGGTA-215ENST00000560207 DNMT1P26358 1616 aaKnown RBP18.46■□□□□ 0.55
RABGGTA-215ENST00000560207 REREQ9P2R6 1566 aa18.46■□□□□ 0.55
RABGGTA-215ENST00000560207 ATP7AQ04656 1500 aa18.45■□□□□ 0.54
RABGGTA-215ENST00000560207 ADGBQ8N7X0 1667 aa18.45■□□□□ 0.54
RABGGTA-215ENST00000560207 MYT1LQ9UL68 1186 aa18.45■□□□□ 0.54
RABGGTA-215ENST00000560207 ATP10AO60312 1499 aa18.45■□□□□ 0.54
RABGGTA-215ENST00000560207 SHANK2Q9UPX8 1470 aa18.45■□□□□ 0.54
RABGGTA-215ENST00000560207 CROCC2H7BZ55 1655 aa18.44■□□□□ 0.54
RABGGTA-215ENST00000560207 C9orf84Q5VXU9 1444 aa18.41■□□□□ 0.54
RABGGTA-215ENST00000560207 RRBP1Q9P2E9 1410 aaKnown RBP18.41■□□□□ 0.54
RABGGTA-215ENST00000560207 DIP2CQ9Y2E4 1556 aa18.41■□□□□ 0.54
RABGGTA-215ENST00000560207 DAPK1P53355 1430 aa18.4■□□□□ 0.54
RABGGTA-215ENST00000560207 PLXNC1O60486 1568 aa18.39■□□□□ 0.53
RABGGTA-215ENST00000560207 ABCA6Q8N139 1617 aa18.39■□□□□ 0.53
RABGGTA-215ENST00000560207 FAM50AQ14320 339 aaKnown RBP18.39■□□□□ 0.53
RABGGTA-215ENST00000560207 PPARGC1BQ86YN6 1023 aaKnown RBP18.38■□□□□ 0.53
RABGGTA-215ENST00000560207 YEATS2Q9ULM3 1422 aa18.38■□□□□ 0.53
RABGGTA-215ENST00000560207 AGLP35573 1532 aa18.37■□□□□ 0.53
RABGGTA-215ENST00000560207 ABCC5O15440 1437 aa18.36■□□□□ 0.53
RABGGTA-215ENST00000560207 A2MP01023 1474 aa18.33■□□□□ 0.53
RABGGTA-215ENST00000560207 ANKRD30AQ9BXX3 1397 aa18.33■□□□□ 0.53
RABGGTA-215ENST00000560207 ADGRL2O95490 1459 aa18.32■□□□□ 0.52
RABGGTA-215ENST00000560207 BCORL1Q5H9F3 1711 aa18.32■□□□□ 0.52
RABGGTA-215ENST00000560207 DHX29Q7Z478 1369 aaKnown RBP18.31■□□□□ 0.52
RABGGTA-215ENST00000560207 EIF2AK4Q9P2K8 1649 aaKnown RBP18.31■□□□□ 0.52
RABGGTA-215ENST00000560207 ARID4BQ4LE39 1312 aaPredicted RBP18.31■□□□□ 0.52
RABGGTA-215ENST00000560207 DUOX2Q9NRD8 1548 aa18.31■□□□□ 0.52
RABGGTA-215ENST00000560207 ROCK1Q13464 1354 aa18.3■□□□□ 0.52
RABGGTA-215ENST00000560207 PPP6R1Q9UPN7 881 aa18.29■□□□□ 0.52
RABGGTA-215ENST00000560207 NCOA1Q15788 1441 aa18.27■□□□□ 0.52
RABGGTA-215ENST00000560207 FAM135AQ9P2D6 1515 aa18.27■□□□□ 0.51
RABGGTA-215ENST00000560207 ERBINQ96RT1 1412 aa18.26■□□□□ 0.51
RABGGTA-215ENST00000560207 ADAMTSL3P82987 1691 aa18.25■□□□□ 0.51
RABGGTA-215ENST00000560207 KIF15Q9NS87 1388 aa18.25■□□□□ 0.51
RABGGTA-215ENST00000560207 SIGLEC1Q9BZZ2 1709 aa18.24■□□□□ 0.51
RABGGTA-215ENST00000560207 FER1L4A9Z1Z3 1794 aa18.23■□□□□ 0.51
RABGGTA-215ENST00000560207 ACIN1Q9UKV3 1341 aaKnown RBP18.23■□□□□ 0.51
RABGGTA-215ENST00000560207 ESF1Q9H501 851 aaKnown RBP18.21■□□□□ 0.51
RABGGTA-215ENST00000560207 CNTLNQ9NXG0 1405 aa18.21■□□□□ 0.51
RABGGTA-215ENST00000560207 RNF17Q9BXT8 1623 aaKnown RBP18.2■□□□□ 0.5
RABGGTA-215ENST00000560207 CHIC2Q9UKJ5 165 aa18.2■□□□□ 0.5
RABGGTA-215ENST00000560207 MROH2AA6NES4 1674 aa18.19■□□□□ 0.5
RABGGTA-215ENST00000560207 RRP7BPQ9NSQ0 103 aa18.19■□□□□ 0.5
RABGGTA-215ENST00000560207 KIF3BO15066 747 aa18.18■□□□□ 0.5
RABGGTA-215ENST00000560207 ZC3H13Q5T200 1668 aaKnown RBP18.18■□□□□ 0.5
RABGGTA-215ENST00000560207 PTPRKQ15262 1439 aa18.17■□□□□ 0.5
RABGGTA-215ENST00000560207 ANKRD50Q9ULJ7 1429 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms