RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CAMSAP2Q08AD1 1489 aa16.88■□□□□ 0.29
USP3-218ENST00000560202 PLCH2O75038 1416 aa16.87■□□□□ 0.29
USP3-218ENST00000560202 ABCA9Q8IUA7 1624 aa16.85■□□□□ 0.29
USP3-218ENST00000560202 ARHGAP5Q13017 1502 aa16.85■□□□□ 0.29
USP3-218ENST00000560202 PTPRKQ15262 1439 aa16.85■□□□□ 0.29
USP3-218ENST00000560202 MYO5CQ9NQX4 1742 aa16.84■□□□□ 0.29
USP3-218ENST00000560202 CDC42BPBQ9Y5S2 1711 aa16.84■□□□□ 0.29
USP3-218ENST00000560202 EFCAB2Q5VUJ9 269 aa16.82■□□□□ 0.28
USP3-218ENST00000560202 ABCC5O15440 1437 aa16.82■□□□□ 0.28
USP3-218ENST00000560202 DAPK1P53355 1430 aa16.82■□□□□ 0.28
USP3-218ENST00000560202 ARAP3Q8WWN8 1544 aa16.81■□□□□ 0.28
USP3-218ENST00000560202 DNAJC5Q9H3Z4 198 aa16.81■□□□□ 0.28
USP3-218ENST00000560202 DNMT1P26358 1616 aaKnown RBP16.81■□□□□ 0.28
USP3-218ENST00000560202 SAMD9LQ8IVG5 1584 aa16.8■□□□□ 0.28
USP3-218ENST00000560202 HNRNPMP52272 730 aaKnown RBP eCLIP16.78■□□□□ 0.28
USP3-218ENST00000560202 CD109Q6YHK3 1445 aa16.78■□□□□ 0.28
USP3-218ENST00000560202 PLEKHH2Q8IVE3 1493 aa16.78■□□□□ 0.28
USP3-218ENST00000560202 CHIC2Q9UKJ5 165 aa16.78■□□□□ 0.28
USP3-218ENST00000560202 MBD5Q9P267 1494 aa16.77■□□□□ 0.28
USP3-218ENST00000560202 SETD5Q9C0A6 1442 aa16.77■□□□□ 0.27
USP3-218ENST00000560202 KIAA1107Q9UPP5 1409 aa16.77■□□□□ 0.27
USP3-218ENST00000560202 RSPH4AQ5TD94 716 aa16.76■□□□□ 0.27
USP3-218ENST00000560202 FANCAO15360 1455 aa16.76■□□□□ 0.27
USP3-218ENST00000560202 GLI2P10070 1586 aa16.75■□□□□ 0.27
USP3-218ENST00000560202 ARHGEF5Q12774 1597 aa16.75■□□□□ 0.27
USP3-218ENST00000560202 AKNAQ7Z591 1439 aa16.75■□□□□ 0.27
USP3-218ENST00000560202 HFM1A2PYH4 1435 aa16.74■□□□□ 0.27
USP3-218ENST00000560202 FAM69CQ0P6D2 419 aa16.74■□□□□ 0.27
USP3-218ENST00000560202 SYCP2Q9BX26 1530 aa16.74■□□□□ 0.27
USP3-218ENST00000560202 ROCK1Q13464 1354 aa16.74■□□□□ 0.27
USP3-218ENST00000560202 RAB3GAP2Q9H2M9 1393 aa16.74■□□□□ 0.27
USP3-218ENST00000560202 TSPY4P0CV99 314 aa16.73■□□□□ 0.27
USP3-218ENST00000560202 TSPY10P0CW01 314 aa16.73■□□□□ 0.27
USP3-218ENST00000560202 CCDC141Q6ZP82 1450 aa16.73■□□□□ 0.27
USP3-218ENST00000560202 ARHGEF12Q9NZN5 1544 aa16.72■□□□□ 0.27
USP3-218ENST00000560202 DIP2BQ9P265 1576 aa16.72■□□□□ 0.27
USP3-218ENST00000560202 RRP7BPQ9NSQ0 103 aa16.72■□□□□ 0.27
USP3-218ENST00000560202 NAIPQ13075 1403 aa16.72■□□□□ 0.27
USP3-218ENST00000560202 ABCC1P33527 1531 aa16.72■□□□□ 0.27
USP3-218ENST00000560202 SHANK2Q9UPX8 1470 aa16.71■□□□□ 0.27
USP3-218ENST00000560202 HRCP23327 699 aa16.71■□□□□ 0.27
USP3-218ENST00000560202 CROCC2H7BZ55 1655 aa16.7■□□□□ 0.26
USP3-218ENST00000560202 C9orf84Q5VXU9 1444 aa16.7■□□□□ 0.26
USP3-218ENST00000560202 MAP3K4Q9Y6R4 1608 aa16.7■□□□□ 0.26
USP3-218ENST00000560202 ADGRL2O95490 1459 aa16.69■□□□□ 0.26
USP3-218ENST00000560202 NCOA1Q15788 1441 aa16.69■□□□□ 0.26
USP3-218ENST00000560202 CCER1Q8TC90 406 aaPredicted RBP16.69■□□□□ 0.26
USP3-218ENST00000560202 ADGRL1O94910 1474 aa16.68■□□□□ 0.26
USP3-218ENST00000560202 ANKRD30AQ9BXX3 1397 aa16.68■□□□□ 0.26
USP3-218ENST00000560202 TRAPPC8Q9Y2L5 1435 aa16.67■□□□□ 0.26
USP3-218ENST00000560202 CFAP74Q9C0B2 1584 aa16.67■□□□□ 0.26
USP3-218ENST00000560202 SCAPERQ9BY12 1400 aa16.67■□□□□ 0.26
USP3-218ENST00000560202 NEO1Q92859 1461 aa16.66■□□□□ 0.26
USP3-218ENST00000560202 ADGBQ8N7X0 1667 aa16.65■□□□□ 0.26
USP3-218ENST00000560202 GCC2Q8IWJ2 1684 aa16.65■□□□□ 0.26
USP3-218ENST00000560202 MAST1Q9Y2H9 1570 aa16.64■□□□□ 0.25
USP3-218ENST00000560202 AFAP1Q8N556 730 aa16.63■□□□□ 0.25
USP3-218ENST00000560202 DHX57Q6P158 1386 aaKnown RBP16.62■□□□□ 0.25
USP3-218ENST00000560202 SPAG9O60271 1321 aaKnown RBP16.61■□□□□ 0.25
USP3-218ENST00000560202 KIF15Q9NS87 1388 aa16.6■□□□□ 0.25
USP3-218ENST00000560202 KIF13AQ9H1H9 1805 aa16.59■□□□□ 0.25
USP3-218ENST00000560202 KDM6BO15054 1643 aa16.59■□□□□ 0.25
USP3-218ENST00000560202 RTEL1-TNFRSF6BF6WH68 1400 aa16.59■□□□□ 0.25
USP3-218ENST00000560202 TEX14Q8IWB6 1497 aa16.59■□□□□ 0.25
USP3-218ENST00000560202 ZNF518AQ6AHZ1 1483 aa16.58■□□□□ 0.24
USP3-218ENST00000560202 POGZQ7Z3K3 1410 aa16.58■□□□□ 0.24
USP3-218ENST00000560202 ANKRD50Q9ULJ7 1429 aa16.58■□□□□ 0.24
USP3-218ENST00000560202 ACIN1Q9UKV3 1341 aaKnown RBP16.57■□□□□ 0.24
USP3-218ENST00000560202 DENND4BO75064 1496 aaPredicted RBP16.57■□□□□ 0.24
USP3-218ENST00000560202 PPRC1Q5VV67 1664 aaKnown RBP16.57■□□□□ 0.24
USP3-218ENST00000560202 PLXNC1O60486 1568 aa16.56■□□□□ 0.24
USP3-218ENST00000560202 ZFYVE16Q7Z3T8 1539 aa16.56■□□□□ 0.24
USP3-218ENST00000560202 TSPOAP1O95153 1857 aa16.54■□□□□ 0.24
USP3-218ENST00000560202 TRIM52Q96A61 297 aa16.54■□□□□ 0.24
USP3-218ENST00000560202 ATP7AQ04656 1500 aa16.53■□□□□ 0.24
USP3-218ENST00000560202 RAPGEF3O95398 923 aa16.53■□□□□ 0.24
USP3-218ENST00000560202 ZEB1P37275 1124 aaPredicted RBP16.53■□□□□ 0.24
USP3-218ENST00000560202 MYT1LQ9UL68 1186 aa16.53■□□□□ 0.24
USP3-218ENST00000560202 KDM5CP41229 1560 aa16.53■□□□□ 0.24
USP3-218ENST00000560202 INO80Q9ULG1 1556 aaPredicted RBP16.53■□□□□ 0.24
USP3-218ENST00000560202 CLSPNQ9HAW4 1339 aa16.52■□□□□ 0.24
USP3-218ENST00000560202 DUOX2Q9NRD8 1548 aa16.52■□□□□ 0.24
USP3-218ENST00000560202 MLH3Q9UHC1 1453 aa16.51■□□□□ 0.23
USP3-218ENST00000560202 TRHP20396 242 aaPredicted RBP16.5■□□□□ 0.23
USP3-218ENST00000560202 ERBINQ96RT1 1412 aa16.49■□□□□ 0.23
USP3-218ENST00000560202 KIDINS220Q9ULH0 1771 aa16.48■□□□□ 0.23
USP3-218ENST00000560202 RICTORQ6R327 1708 aa16.47■□□□□ 0.23
USP3-218ENST00000560202 MPHOSPH9Q99550 1183 aa16.47■□□□□ 0.23
USP3-218ENST00000560202 HECW2Q9P2P5 1572 aa16.47■□□□□ 0.23
USP3-218ENST00000560202 DHX29Q7Z478 1369 aaKnown RBP16.45■□□□□ 0.22
USP3-218ENST00000560202 FRMPD1Q5SYB0 1578 aa16.45■□□□□ 0.22
USP3-218ENST00000560202 NUP155O75694 1391 aa16.44■□□□□ 0.22
USP3-218ENST00000560202 SLC4A1APQ9BWU0 796 aaKnown RBP16.43■□□□□ 0.22
USP3-218ENST00000560202 PZPP20742 1482 aa16.43■□□□□ 0.22
USP3-218ENST00000560202 COL17A1Q9UMD9 1497 aaPredicted RBP16.43■□□□□ 0.22
USP3-218ENST00000560202 ZMYM4Q5VZL5 1548 aa16.43■□□□□ 0.22
USP3-218ENST00000560202 KDM5DQ9BY66 1539 aa16.42■□□□□ 0.22
USP3-218ENST00000560202 A2MP01023 1474 aa16.42■□□□□ 0.22
USP3-218ENST00000560202 MAGI2Q86UL8 1455 aa16.4■□□□□ 0.22
USP3-218ENST00000560202 UNC13BO14795 1591 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms