RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 CDC42BPBQ9Y5S2 1711 aa26.67■■□□□ 1.86
SNX1-208ENST00000559844 GPATCH8Q9UKJ3 1502 aaKnown RBP26.66■■□□□ 1.86
SNX1-208ENST00000559844 PHLDB1Q86UU1 1377 aa26.65■■□□□ 1.86
SNX1-208ENST00000559844 PPRC1Q5VV67 1664 aaKnown RBP26.63■■□□□ 1.85
SNX1-208ENST00000559844 PLCH2O75038 1416 aa26.63■■□□□ 1.85
SNX1-208ENST00000559844 ARHGAP5Q13017 1502 aa26.62■■□□□ 1.85
SNX1-208ENST00000559844 MYOM3Q5VTT5 1437 aa26.62■■□□□ 1.85
SNX1-208ENST00000559844 ARAP3Q8WWN8 1544 aa26.6■■□□□ 1.85
SNX1-208ENST00000559844 CFDP1Q9UEE9 299 aaPredicted RBP26.57■■□□□ 1.84
SNX1-208ENST00000559844 FANCAO15360 1455 aa26.57■■□□□ 1.84
SNX1-208ENST00000559844 TEX14Q8IWB6 1497 aa26.55■■□□□ 1.84
SNX1-208ENST00000559844 CFAP74Q9C0B2 1584 aa26.54■■□□□ 1.84
SNX1-208ENST00000559844 EFCAB2Q5VUJ9 269 aa26.53■■□□□ 1.84
SNX1-208ENST00000559844 ZNF777Q9ULD5 760 aaPredicted RBP26.53■■□□□ 1.84
SNX1-208ENST00000559844 FGD6Q6ZV73 1430 aa26.52■■□□□ 1.84
SNX1-208ENST00000559844 MIA2Q96PC5 1412 aa26.52■■□□□ 1.84
SNX1-208ENST00000559844 SAMD9LQ8IVG5 1584 aa26.51■■□□□ 1.83
SNX1-208ENST00000559844 PTPN23Q9H3S7 1636 aa26.5■■□□□ 1.83
SNX1-208ENST00000559844 NEO1Q92859 1461 aa26.49■■□□□ 1.83
SNX1-208ENST00000559844 ZNF644Q9H582 1327 aaPredicted RBP26.47■■□□□ 1.83
SNX1-208ENST00000559844 CAMSAP2Q08AD1 1489 aa26.47■■□□□ 1.83
SNX1-208ENST00000559844 AKNAQ7Z591 1439 aa26.47■■□□□ 1.83
SNX1-208ENST00000559844 ADGRL1O94910 1474 aa26.44■■□□□ 1.82
SNX1-208ENST00000559844 ABCC1P33527 1531 aa26.44■■□□□ 1.82
SNX1-208ENST00000559844 TCOF1Q13428 1488 aaKnown RBP26.42■■□□□ 1.82
SNX1-208ENST00000559844 SYCP2Q9BX26 1530 aa26.41■■□□□ 1.82
SNX1-208ENST00000559844 PLEKHH2Q8IVE3 1493 aa26.41■■□□□ 1.82
SNX1-208ENST00000559844 FAM50AQ14320 339 aaKnown RBP26.4■■□□□ 1.82
SNX1-208ENST00000559844 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.38■■□□□ 1.81
SNX1-208ENST00000559844 SCAPERQ9BY12 1400 aa26.38■■□□□ 1.81
SNX1-208ENST00000559844 ARHGEF12Q9NZN5 1544 aa26.38■■□□□ 1.81
SNX1-208ENST00000559844 KIAA1107Q9UPP5 1409 aa26.36■■□□□ 1.81
SNX1-208ENST00000559844 HNRNPMP52272 730 aaKnown RBP eCLIP26.35■■□□□ 1.81
SNX1-208ENST00000559844 CLSPNQ9HAW4 1339 aa26.34■■□□□ 1.81
SNX1-208ENST00000559844 MBD5Q9P267 1494 aa26.33■■□□□ 1.81
SNX1-208ENST00000559844 DENND4BO75064 1496 aaPredicted RBP26.32■■□□□ 1.8
SNX1-208ENST00000559844 RICTORQ6R327 1708 aa26.32■■□□□ 1.8
SNX1-208ENST00000559844 KDM6BO15054 1643 aa26.32■■□□□ 1.8
SNX1-208ENST00000559844 ARHGEF5Q12774 1597 aa26.31■■□□□ 1.8
SNX1-208ENST00000559844 TRAPPC8Q9Y2L5 1435 aa26.31■■□□□ 1.8
SNX1-208ENST00000559844 COL17A1Q9UMD9 1497 aaPredicted RBP26.31■■□□□ 1.8
SNX1-208ENST00000559844 DNMT1P26358 1616 aaKnown RBP26.3■■□□□ 1.8
SNX1-208ENST00000559844 POGZQ7Z3K3 1410 aa26.3■■□□□ 1.8
SNX1-208ENST00000559844 ZNF518AQ6AHZ1 1483 aa26.28■■□□□ 1.8
SNX1-208ENST00000559844 RAPGEF3O95398 923 aa26.28■■□□□ 1.8
SNX1-208ENST00000559844 ITGAEP38570 1179 aa26.28■■□□□ 1.8
SNX1-208ENST00000559844 CCDC141Q6ZP82 1450 aa26.28■■□□□ 1.8
SNX1-208ENST00000559844 FRMPD1Q5SYB0 1578 aa26.28■■□□□ 1.8
SNX1-208ENST00000559844 DHX57Q6P158 1386 aaKnown RBP26.27■■□□□ 1.8
SNX1-208ENST00000559844 CROCC2H7BZ55 1655 aa26.27■■□□□ 1.8
SNX1-208ENST00000559844 AFAP1Q8N556 730 aa26.26■■□□□ 1.79
SNX1-208ENST00000559844 DAPK1P53355 1430 aa26.25■■□□□ 1.79
SNX1-208ENST00000559844 RSPH4AQ5TD94 716 aa26.24■■□□□ 1.79
SNX1-208ENST00000559844 ABCC5O15440 1437 aa26.24■■□□□ 1.79
SNX1-208ENST00000559844 KDM5CP41229 1560 aa26.23■■□□□ 1.79
SNX1-208ENST00000559844 SETD5Q9C0A6 1442 aa26.21■■□□□ 1.79
SNX1-208ENST00000559844 TSPY4P0CV99 314 aa26.18■■□□□ 1.78
SNX1-208ENST00000559844 TSPY10P0CW01 314 aa26.18■■□□□ 1.78
SNX1-208ENST00000559844 ZMYM4Q5VZL5 1548 aa26.18■■□□□ 1.78
SNX1-208ENST00000559844 HECW2Q9P2P5 1572 aa26.18■■□□□ 1.78
SNX1-208ENST00000559844 RAB3GAP2Q9H2M9 1393 aa26.18■■□□□ 1.78
SNX1-208ENST00000559844 SHANK2Q9UPX8 1470 aa26.17■■□□□ 1.78
SNX1-208ENST00000559844 SPAG9O60271 1321 aaKnown RBP26.17■■□□□ 1.78
SNX1-208ENST00000559844 C9orf84Q5VXU9 1444 aa26.17■■□□□ 1.78
SNX1-208ENST00000559844 INO80Q9ULG1 1556 aaPredicted RBP26.16■■□□□ 1.78
SNX1-208ENST00000559844 PTPRKQ15262 1439 aa26.16■■□□□ 1.78
SNX1-208ENST00000559844 MAST1Q9Y2H9 1570 aa26.16■■□□□ 1.78
SNX1-208ENST00000559844 MYT1LQ9UL68 1186 aa26.15■■□□□ 1.78
SNX1-208ENST00000559844 ATP7AQ04656 1500 aa26.15■■□□□ 1.78
SNX1-208ENST00000559844 ZFYVE16Q7Z3T8 1539 aa26.15■■□□□ 1.78
SNX1-208ENST00000559844 KIDINS220Q9ULH0 1771 aa26.15■■□□□ 1.78
SNX1-208ENST00000559844 ADGBQ8N7X0 1667 aa26.14■■□□□ 1.78
SNX1-208ENST00000559844 CHIC2Q9UKJ5 165 aa26.14■■□□□ 1.77
SNX1-208ENST00000559844 MLH3Q9UHC1 1453 aa26.13■■□□□ 1.77
SNX1-208ENST00000559844 RTEL1-TNFRSF6BF6WH68 1400 aa26.1■■□□□ 1.77
SNX1-208ENST00000559844 MAGI2Q86UL8 1455 aa26.09■■□□□ 1.77
SNX1-208ENST00000559844 ABCA6Q8N139 1617 aa26.08■■□□□ 1.77
SNX1-208ENST00000559844 YEATS2Q9ULM3 1422 aa26.07■■□□□ 1.76
SNX1-208ENST00000559844 PLXNC1O60486 1568 aa26.07■■□□□ 1.76
SNX1-208ENST00000559844 ADGRL2O95490 1459 aa26.06■■□□□ 1.76
SNX1-208ENST00000559844 ARHGEF40Q8TER5 1519 aa26.05■■□□□ 1.76
SNX1-208ENST00000559844 ANKRD30AQ9BXX3 1397 aa26.05■■□□□ 1.76
SNX1-208ENST00000559844 DIP2CQ9Y2E4 1556 aa26.05■■□□□ 1.76
SNX1-208ENST00000559844 NCOA1Q15788 1441 aa26.03■■□□□ 1.76
SNX1-208ENST00000559844 ROCK1Q13464 1354 aa26.02■■□□□ 1.76
SNX1-208ENST00000559844 RRP7BPQ9NSQ0 103 aa26.02■■□□□ 1.76
SNX1-208ENST00000559844 KIF15Q9NS87 1388 aa26■■□□□ 1.75
SNX1-208ENST00000559844 HFM1A2PYH4 1435 aa25.98■■□□□ 1.75
SNX1-208ENST00000559844 GCC2Q8IWJ2 1684 aa25.97■■□□□ 1.75
SNX1-208ENST00000559844 ATP10AO60312 1499 aa25.97■■□□□ 1.75
SNX1-208ENST00000559844 ZNF316A6NFI3 1004 aaPredicted RBP25.95■■□□□ 1.75
SNX1-208ENST00000559844 DUOX2Q9NRD8 1548 aa25.95■■□□□ 1.74
SNX1-208ENST00000559844 A2MP01023 1474 aa25.95■■□□□ 1.74
SNX1-208ENST00000559844 NAIPQ13075 1403 aa25.92■■□□□ 1.74
SNX1-208ENST00000559844 REREQ9P2R6 1566 aa25.91■■□□□ 1.74
SNX1-208ENST00000559844 SIGLEC1Q9BZZ2 1709 aa25.91■■□□□ 1.74
SNX1-208ENST00000559844 DHX29Q7Z478 1369 aaKnown RBP25.9■■□□□ 1.74
SNX1-208ENST00000559844 ANKRD50Q9ULJ7 1429 aa25.89■■□□□ 1.73
SNX1-208ENST00000559844 ERBINQ96RT1 1412 aa25.88■■□□□ 1.73
SNX1-208ENST00000559844 EIF2AK4Q9P2K8 1649 aaKnown RBP25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms