RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 CDC42BPBQ9Y5S2 1711 aa13.08□□□□□ -0.32
SNX1-207ENST00000559401 SCAPERQ9BY12 1400 aa13.07□□□□□ -0.32
SNX1-207ENST00000559401 CDC42BPAQ5VT25 1732 aa13.07□□□□□ -0.32
SNX1-207ENST00000559401 ARHGEF40Q8TER5 1519 aa13.07□□□□□ -0.32
SNX1-207ENST00000559401 MTUS2Q5JR59 1369 aa13.07□□□□□ -0.32
SNX1-207ENST00000559401 POGZQ7Z3K3 1410 aa13.05□□□□□ -0.32
SNX1-207ENST00000559401 ZMYM4Q5VZL5 1548 aa13.05□□□□□ -0.32
SNX1-207ENST00000559401 ZFYVE16Q7Z3T8 1539 aa13.04□□□□□ -0.32
SNX1-207ENST00000559401 ARID4BQ4LE39 1312 aaPredicted RBP13.04□□□□□ -0.32
SNX1-207ENST00000559401 EHBP1L1Q8N3D4 1523 aa13.03□□□□□ -0.32
SNX1-207ENST00000559401 MYT1LQ9UL68 1186 aa13.03□□□□□ -0.32
SNX1-207ENST00000559401 VPS8Q8N3P4 1428 aa13.03□□□□□ -0.32
SNX1-207ENST00000559401 ITSN2Q9NZM3 1697 aa13.02□□□□□ -0.33
SNX1-207ENST00000559401 ZNF777Q9ULD5 760 aaPredicted RBP13.01□□□□□ -0.33
SNX1-207ENST00000559401 YEATS2Q9ULM3 1422 aa13.01□□□□□ -0.33
SNX1-207ENST00000559401 ZNF518AQ6AHZ1 1483 aa13.01□□□□□ -0.33
SNX1-207ENST00000559401 ABCC1P33527 1531 aa13.01□□□□□ -0.33
SNX1-207ENST00000559401 TIAM1Q13009 1591 aa13□□□□□ -0.33
SNX1-207ENST00000559401 MAGI2Q86UL8 1455 aa13□□□□□ -0.33
SNX1-207ENST00000559401 CCNB3Q8WWL7 1395 aa13□□□□□ -0.33
SNX1-207ENST00000559401 BCORL1Q5H9F3 1711 aa12.99□□□□□ -0.33
SNX1-207ENST00000559401 HECW2Q9P2P5 1572 aa12.99□□□□□ -0.33
SNX1-207ENST00000559401 SUPT6HQ7KZ85 1726 aaKnown RBP12.99□□□□□ -0.33
SNX1-207ENST00000559401 SAMD9LQ8IVG5 1584 aa12.98□□□□□ -0.33
SNX1-207ENST00000559401 GPATCH8Q9UKJ3 1502 aaKnown RBP12.98□□□□□ -0.33
SNX1-207ENST00000559401 KDM5CP41229 1560 aa12.98□□□□□ -0.33
SNX1-207ENST00000559401 ADAMTSL3P82987 1691 aa12.97□□□□□ -0.33
SNX1-207ENST00000559401 AFAP1Q8N556 730 aa12.97□□□□□ -0.33
SNX1-207ENST00000559401 CFDP1Q9UEE9 299 aaPredicted RBP12.97□□□□□ -0.33
SNX1-207ENST00000559401 MADDQ8WXG6 1647 aa12.97□□□□□ -0.33
SNX1-207ENST00000559401 SYCP2Q9BX26 1530 aa12.97□□□□□ -0.33
SNX1-207ENST00000559401 SIGLEC1Q9BZZ2 1709 aa12.96□□□□□ -0.34
SNX1-207ENST00000559401 ARHGEF12Q9NZN5 1544 aa12.95□□□□□ -0.34
SNX1-207ENST00000559401 RIMS1Q86UR5 1692 aaKnown RBP12.95□□□□□ -0.34
SNX1-207ENST00000559401 C9orf84Q5VXU9 1444 aa12.95□□□□□ -0.34
SNX1-207ENST00000559401 TRAPPC8Q9Y2L5 1435 aa12.95□□□□□ -0.34
SNX1-207ENST00000559401 ATP10AO60312 1499 aa12.94□□□□□ -0.34
SNX1-207ENST00000559401 ABCA6Q8N139 1617 aa12.94□□□□□ -0.34
SNX1-207ENST00000559401 DIP2CQ9Y2E4 1556 aa12.94□□□□□ -0.34
SNX1-207ENST00000559401 NCOA2Q15596 1464 aa12.93□□□□□ -0.34
SNX1-207ENST00000559401 PLEKHH2Q8IVE3 1493 aa12.93□□□□□ -0.34
SNX1-207ENST00000559401 MLECQ14165 292 aa12.93□□□□□ -0.34
SNX1-207ENST00000559401 FER1L4A9Z1Z3 1794 aa12.92□□□□□ -0.34
SNX1-207ENST00000559401 PTPRMP28827 1452 aa12.91□□□□□ -0.34
SNX1-207ENST00000559401 LRRC9Q6ZRR7 1453 aa12.91□□□□□ -0.34
SNX1-207ENST00000559401 MLH3Q9UHC1 1453 aa12.91□□□□□ -0.34
SNX1-207ENST00000559401 HNRNPMP52272 730 aaKnown RBP eCLIP12.91□□□□□ -0.34
SNX1-207ENST00000559401 APLP2Q06481 763 aa12.91□□□□□ -0.34
SNX1-207ENST00000559401 KIDINS220Q9ULH0 1771 aa12.91□□□□□ -0.34
SNX1-207ENST00000559401 PLPPR3Q6T4P5 718 aa12.9□□□□□ -0.34
SNX1-207ENST00000559401 MAP3K1Q13233 1512 aa12.89□□□□□ -0.35
SNX1-207ENST00000559401 SPAG9O60271 1321 aaKnown RBP12.88□□□□□ -0.35
SNX1-207ENST00000559401 ATP7AQ04656 1500 aa12.88□□□□□ -0.35
SNX1-207ENST00000559401 KIAA1107Q9UPP5 1409 aa12.88□□□□□ -0.35
SNX1-207ENST00000559401 ZNF644Q9H582 1327 aaPredicted RBP12.88□□□□□ -0.35
SNX1-207ENST00000559401 REREQ9P2R6 1566 aa12.87□□□□□ -0.35
SNX1-207ENST00000559401 INO80Q9ULG1 1556 aaPredicted RBP12.87□□□□□ -0.35
SNX1-207ENST00000559401 CAMSAP2Q08AD1 1489 aa12.87□□□□□ -0.35
SNX1-207ENST00000559401 KANK4Q5T7N3 995 aaPredicted RBP12.86□□□□□ -0.35
SNX1-207ENST00000559401 ADGBQ8N7X0 1667 aa12.83□□□□□ -0.35
SNX1-207ENST00000559401 CCDC141Q6ZP82 1450 aa12.83□□□□□ -0.36
SNX1-207ENST00000559401 AGLP35573 1532 aa12.83□□□□□ -0.36
SNX1-207ENST00000559401 ESF1Q9H501 851 aaKnown RBP12.82□□□□□ -0.36
SNX1-207ENST00000559401 MBD5Q9P267 1494 aa12.82□□□□□ -0.36
SNX1-207ENST00000559401 MYOM3Q5VTT5 1437 aa12.81□□□□□ -0.36
SNX1-207ENST00000559401 A2MP01023 1474 aa12.8□□□□□ -0.36
SNX1-207ENST00000559401 ARHGEF5Q12774 1597 aa12.8□□□□□ -0.36
SNX1-207ENST00000559401 PLXNC1O60486 1568 aa12.78□□□□□ -0.36
SNX1-207ENST00000559401 MIA2Q96PC5 1412 aa12.78□□□□□ -0.36
SNX1-207ENST00000559401 RTEL1-TNFRSF6BF6WH68 1400 aa12.77□□□□□ -0.37
SNX1-207ENST00000559401 PTPN23Q9H3S7 1636 aa12.77□□□□□ -0.37
SNX1-207ENST00000559401 C3P01024 1663 aa12.77□□□□□ -0.37
SNX1-207ENST00000559401 TSPY4P0CV99 314 aa12.76□□□□□ -0.37
SNX1-207ENST00000559401 TSPY10P0CW01 314 aa12.76□□□□□ -0.37
SNX1-207ENST00000559401 CEBPAP49715 358 aaPredicted RBP12.76□□□□□ -0.37
SNX1-207ENST00000559401 RSPH4AQ5TD94 716 aa12.76□□□□□ -0.37
SNX1-207ENST00000559401 CLTCQ00610 1675 aaKnown RBP12.76□□□□□ -0.37
SNX1-207ENST00000559401 PREX1Q8TCU6 1659 aa12.76□□□□□ -0.37
SNX1-207ENST00000559401 LMTK3Q96Q04 1460 aa12.75□□□□□ -0.37
SNX1-207ENST00000559401 CNTLNQ9NXG0 1405 aa12.74□□□□□ -0.37
SNX1-207ENST00000559401 GGT6Q6P531 493 aa12.74□□□□□ -0.37
SNX1-207ENST00000559401 MROH2AA6NES4 1674 aa12.73□□□□□ -0.37
SNX1-207ENST00000559401 CROCC2H7BZ55 1655 aa12.73□□□□□ -0.37
SNX1-207ENST00000559401 MAST1Q9Y2H9 1570 aa12.73□□□□□ -0.37
SNX1-207ENST00000559401 FGD6Q6ZV73 1430 aa12.72□□□□□ -0.37
SNX1-207ENST00000559401 DHX29Q7Z478 1369 aaKnown RBP12.71□□□□□ -0.37
SNX1-207ENST00000559401 KIF3BO15066 747 aa12.7□□□□□ -0.38
SNX1-207ENST00000559401 HSPA2P54652 639 aa12.7□□□□□ -0.38
SNX1-207ENST00000559401 UHRF1BP1Q6BDS2 1440 aa12.7□□□□□ -0.38
SNX1-207ENST00000559401 DNMT1P26358 1616 aaKnown RBP12.7□□□□□ -0.38
SNX1-207ENST00000559401 TCOF1Q13428 1488 aaKnown RBP12.68□□□□□ -0.38
SNX1-207ENST00000559401 SETD1BQ9UPS6 1966 aaKnown RBP12.67□□□□□ -0.38
SNX1-207ENST00000559401 SHANK2Q9UPX8 1470 aa12.67□□□□□ -0.38
SNX1-207ENST00000559401 FAM50AQ14320 339 aaKnown RBP12.67□□□□□ -0.38
SNX1-207ENST00000559401 DAPK1P53355 1430 aa12.67□□□□□ -0.38
SNX1-207ENST00000559401 ZMYM3Q14202 1370 aa12.67□□□□□ -0.38
SNX1-207ENST00000559401 KDM5DQ9BY66 1539 aa12.67□□□□□ -0.38
SNX1-207ENST00000559401 EIF2AK4Q9P2K8 1649 aaKnown RBP12.66□□□□□ -0.38
SNX1-207ENST00000559401 ABCC5O15440 1437 aa12.66□□□□□ -0.38
SNX1-207ENST00000559401 PPARGC1BQ86YN6 1023 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms