RNA–Protein interactions for RNA: ENST00000559399.5

LRRC28-213, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-213ENST00000559399 CASKIN1Q8WXD9 1431 aa24.37■■□□□ 1.49
LRRC28-213ENST00000559399 YEATS2Q9ULM3 1422 aa24.36■■□□□ 1.49
LRRC28-213ENST00000559399 BCORL1Q5H9F3 1711 aa24.35■■□□□ 1.49
LRRC28-213ENST00000559399 CCDC18Q5T9S5 1454 aa24.34■■□□□ 1.49
LRRC28-213ENST00000559399 PCF11O94913 1555 aaKnown RBP24.33■■□□□ 1.49
LRRC28-213ENST00000559399 MADDQ8WXG6 1647 aa24.32■■□□□ 1.48
LRRC28-213ENST00000559399 ARHGAP5Q13017 1502 aa24.3■■□□□ 1.48
LRRC28-213ENST00000559399 MYO5CQ9NQX4 1742 aa24.3■■□□□ 1.48
LRRC28-213ENST00000559399 FYCO1Q9BQS8 1478 aa24.27■■□□□ 1.48
LRRC28-213ENST00000559399 ZNF518AQ6AHZ1 1483 aa24.26■■□□□ 1.47
LRRC28-213ENST00000559399 LRRIQ1Q96JM4 1722 aa24.25■■□□□ 1.47
LRRC28-213ENST00000559399 ATP10AO60312 1499 aa24.24■■□□□ 1.47
LRRC28-213ENST00000559399 C9orf84Q5VXU9 1444 aa24.23■■□□□ 1.47
LRRC28-213ENST00000559399 MLECQ14165 292 aa24.21■■□□□ 1.47
LRRC28-213ENST00000559399 AFAP1Q8N556 730 aa24.21■■□□□ 1.47
LRRC28-213ENST00000559399 KDM5CP41229 1560 aa24.2■■□□□ 1.46
LRRC28-213ENST00000559399 SIGLEC1Q9BZZ2 1709 aa24.19■■□□□ 1.46
LRRC28-213ENST00000559399 RIMS1Q86UR5 1692 aaKnown RBP24.19■■□□□ 1.46
LRRC28-213ENST00000559399 ILDR1Q86SU0 546 aaPredicted RBP24.19■■□□□ 1.46
LRRC28-213ENST00000559399 LMTK3Q96Q04 1460 aa24.17■■□□□ 1.46
LRRC28-213ENST00000559399 PREX2Q70Z35 1606 aa24.16■■□□□ 1.46
LRRC28-213ENST00000559399 PLPPR3Q6T4P5 718 aa24.15■■□□□ 1.46
LRRC28-213ENST00000559399 MYT1LQ9UL68 1186 aa24.15■■□□□ 1.46
LRRC28-213ENST00000559399 ABCC1P33527 1531 aa24.15■■□□□ 1.46
LRRC28-213ENST00000559399 ARHGEF12Q9NZN5 1544 aa24.13■■□□□ 1.45
LRRC28-213ENST00000559399 MLH3Q9UHC1 1453 aa24.13■■□□□ 1.45
LRRC28-213ENST00000559399 TRAPPC8Q9Y2L5 1435 aa24.12■■□□□ 1.45
LRRC28-213ENST00000559399 CDC42BPBQ9Y5S2 1711 aa24.11■■□□□ 1.45
LRRC28-213ENST00000559399 DIP2CQ9Y2E4 1556 aa24.09■■□□□ 1.45
LRRC28-213ENST00000559399 GPATCH8Q9UKJ3 1502 aaKnown RBP24.07■■□□□ 1.44
LRRC28-213ENST00000559399 REREQ9P2R6 1566 aa24.07■■□□□ 1.44
LRRC28-213ENST00000559399 ZNF777Q9ULD5 760 aaPredicted RBP24.06■■□□□ 1.44
LRRC28-213ENST00000559399 FER1L4A9Z1Z3 1794 aa24.06■■□□□ 1.44
LRRC28-213ENST00000559399 MTUS2Q5JR59 1369 aa24.04■■□□□ 1.44
LRRC28-213ENST00000559399 ABCA6Q8N139 1617 aa24.04■■□□□ 1.44
LRRC28-213ENST00000559399 CEP162Q5TB80 1403 aa24.03■■□□□ 1.44
LRRC28-213ENST00000559399 ITSN2Q9NZM3 1697 aa24.03■■□□□ 1.44
LRRC28-213ENST00000559399 HSPA2P54652 639 aa24.03■■□□□ 1.44
LRRC28-213ENST00000559399 CDC42BPAQ5VT25 1732 aa24.02■■□□□ 1.44
LRRC28-213ENST00000559399 CCNB3Q8WWL7 1395 aa24.02■■□□□ 1.44
LRRC28-213ENST00000559399 CFDP1Q9UEE9 299 aaPredicted RBP24.01■■□□□ 1.43
LRRC28-213ENST00000559399 AGLP35573 1532 aa24■■□□□ 1.43
LRRC28-213ENST00000559399 SAMD9LQ8IVG5 1584 aa24■■□□□ 1.43
LRRC28-213ENST00000559399 SYCP2Q9BX26 1530 aa24■■□□□ 1.43
LRRC28-213ENST00000559399 CEBPAP49715 358 aaPredicted RBP23.99■■□□□ 1.43
LRRC28-213ENST00000559399 KIAA1107Q9UPP5 1409 aa23.99■■□□□ 1.43
LRRC28-213ENST00000559399 PLEKHH2Q8IVE3 1493 aa23.98■■□□□ 1.43
LRRC28-213ENST00000559399 SPAG9O60271 1321 aaKnown RBP23.96■■□□□ 1.43
LRRC28-213ENST00000559399 HNRNPMP52272 730 aaKnown RBP eCLIP23.96■■□□□ 1.43
LRRC28-213ENST00000559399 EHBP1L1Q8N3D4 1523 aa23.94■■□□□ 1.42
LRRC28-213ENST00000559399 ESF1Q9H501 851 aaKnown RBP23.94■■□□□ 1.42
LRRC28-213ENST00000559399 KIDINS220Q9ULH0 1771 aa23.93■■□□□ 1.42
LRRC28-213ENST00000559399 FBXO41Q8TF61 875 aa23.91■■□□□ 1.42
LRRC28-213ENST00000559399 UHRF1BP1Q6BDS2 1440 aa23.89■■□□□ 1.41
LRRC28-213ENST00000559399 CNTLNQ9NXG0 1405 aa23.89■■□□□ 1.41
LRRC28-213ENST00000559399 TIAM1Q13009 1591 aa23.88■■□□□ 1.41
LRRC28-213ENST00000559399 ATP7AQ04656 1500 aa23.88■■□□□ 1.41
LRRC28-213ENST00000559399 PREX1Q8TCU6 1659 aa23.87■■□□□ 1.41
LRRC28-213ENST00000559399 ZNF644Q9H582 1327 aaPredicted RBP23.85■■□□□ 1.41
LRRC28-213ENST00000559399 INO80Q9ULG1 1556 aaPredicted RBP23.85■■□□□ 1.41
LRRC28-213ENST00000559399 A2MP01023 1474 aa23.83■■□□□ 1.41
LRRC28-213ENST00000559399 MBD5Q9P267 1494 aa23.81■■□□□ 1.4
LRRC28-213ENST00000559399 PLXNC1O60486 1568 aa23.81■■□□□ 1.4
LRRC28-213ENST00000559399 NCOA2Q15596 1464 aa23.81■■□□□ 1.4
LRRC28-213ENST00000559399 C3P01024 1663 aa23.79■■□□□ 1.4
LRRC28-213ENST00000559399 VPS8Q8N3P4 1428 aa23.79■■□□□ 1.4
LRRC28-213ENST00000559399 LOC105371045A0A1W2PR82 267 aa23.79■■□□□ 1.4
LRRC28-213ENST00000559399 DMRT2Q9Y5R5 561 aa23.76■■□□□ 1.39
LRRC28-213ENST00000559399 ZMYM3Q14202 1370 aa23.76■■□□□ 1.39
LRRC28-213ENST00000559399 RTEL1-TNFRSF6BF6WH68 1400 aa23.76■■□□□ 1.39
LRRC28-213ENST00000559399 NPATQ14207 1427 aa23.76■■□□□ 1.39
LRRC28-213ENST00000559399 SUPT6HQ7KZ85 1726 aaKnown RBP23.73■■□□□ 1.39
LRRC28-213ENST00000559399 GGT6Q6P531 493 aa23.73■■□□□ 1.39
LRRC28-213ENST00000559399 CCDC141Q6ZP82 1450 aa23.73■■□□□ 1.39
LRRC28-213ENST00000559399 CAMSAP2Q08AD1 1489 aa23.72■■□□□ 1.39
LRRC28-213ENST00000559399 CERKQ8TCT0 537 aa23.71■■□□□ 1.39
LRRC28-213ENST00000559399 MROH2AA6NES4 1674 aa23.7■■□□□ 1.39
LRRC28-213ENST00000559399 LRRC9Q6ZRR7 1453 aa23.7■■□□□ 1.38
LRRC28-213ENST00000559399 RSPH4AQ5TD94 716 aa23.7■■□□□ 1.38
LRRC28-213ENST00000559399 PPP6R1Q9UPN7 881 aa23.7■■□□□ 1.38
LRRC28-213ENST00000559399 DHX29Q7Z478 1369 aaKnown RBP23.68■■□□□ 1.38
LRRC28-213ENST00000559399 ADGBQ8N7X0 1667 aa23.68■■□□□ 1.38
LRRC28-213ENST00000559399 SETD1BQ9UPS6 1966 aaKnown RBP23.66■■□□□ 1.38
LRRC28-213ENST00000559399 PTPRTO14522 1441 aa23.66■■□□□ 1.38
LRRC28-213ENST00000559399 PTPRKQ15262 1439 aa23.65■■□□□ 1.38
LRRC28-213ENST00000559399 NCOA1Q15788 1441 aa23.65■■□□□ 1.38
LRRC28-213ENST00000559399 STRCQ7RTU9 1775 aa23.65■■□□□ 1.38
LRRC28-213ENST00000559399 MAP3K1Q13233 1512 aa23.64■■□□□ 1.37
LRRC28-213ENST00000559399 CLTCQ00610 1675 aaKnown RBP23.63■■□□□ 1.37
LRRC28-213ENST00000559399 KIF3BO15066 747 aa23.61■■□□□ 1.37
LRRC28-213ENST00000559399 TSPY4P0CV99 314 aa23.61■■□□□ 1.37
LRRC28-213ENST00000559399 TSPY10P0CW01 314 aa23.61■■□□□ 1.37
LRRC28-213ENST00000559399 KANK4Q5T7N3 995 aaPredicted RBP23.61■■□□□ 1.37
LRRC28-213ENST00000559399 ARHGEF5Q12774 1597 aa23.61■■□□□ 1.37
LRRC28-213ENST00000559399 CAMSAP1Q5T5Y3 1602 aa23.58■■□□□ 1.36
LRRC28-213ENST00000559399 MYO3AQ8NEV4 1616 aa23.56■■□□□ 1.36
LRRC28-213ENST00000559399 MIA2Q96PC5 1412 aa23.56■■□□□ 1.36
LRRC28-213ENST00000559399 FAM135AQ9P2D6 1515 aa23.55■■□□□ 1.36
LRRC28-213ENST00000559399 MYOM3Q5VTT5 1437 aa23.55■■□□□ 1.36
LRRC28-213ENST00000559399 KDM5DQ9BY66 1539 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms