RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CFAP74Q9C0B2 1584 aa14.22□□□□□ -0.13
LDLR-210ENST00000559340 CDC42BPBQ9Y5S2 1711 aa14.21□□□□□ -0.14
LDLR-210ENST00000559340 PREX2Q70Z35 1606 aa14.2□□□□□ -0.14
LDLR-210ENST00000559340 CFDP1Q9UEE9 299 aaPredicted RBP14.2□□□□□ -0.14
LDLR-210ENST00000559340 ARHGAP5Q13017 1502 aa14.19□□□□□ -0.14
LDLR-210ENST00000559340 GPATCH8Q9UKJ3 1502 aaKnown RBP14.19□□□□□ -0.14
LDLR-210ENST00000559340 PPARGC1BQ86YN6 1023 aaKnown RBP14.18□□□□□ -0.14
LDLR-210ENST00000559340 NEO1Q92859 1461 aa14.18□□□□□ -0.14
LDLR-210ENST00000559340 PPRC1Q5VV67 1664 aaKnown RBP14.17□□□□□ -0.14
LDLR-210ENST00000559340 MYOM3Q5VTT5 1437 aa14.16□□□□□ -0.14
LDLR-210ENST00000559340 MIA2Q96PC5 1412 aa14.16□□□□□ -0.14
LDLR-210ENST00000559340 FANCAO15360 1455 aa14.16□□□□□ -0.14
LDLR-210ENST00000559340 PLEKHH2Q8IVE3 1493 aa14.15□□□□□ -0.14
LDLR-210ENST00000559340 ZNF777Q9ULD5 760 aaPredicted RBP14.15□□□□□ -0.14
LDLR-210ENST00000559340 AKNAQ7Z591 1439 aa14.14□□□□□ -0.15
LDLR-210ENST00000559340 COL17A1Q9UMD9 1497 aaPredicted RBP14.12□□□□□ -0.15
LDLR-210ENST00000559340 RSPH4AQ5TD94 716 aa14.12□□□□□ -0.15
LDLR-210ENST00000559340 ADGRL1O94910 1474 aa14.12□□□□□ -0.15
LDLR-210ENST00000559340 FGD6Q6ZV73 1430 aa14.1□□□□□ -0.15
LDLR-210ENST00000559340 KIAA1107Q9UPP5 1409 aa14.1□□□□□ -0.15
LDLR-210ENST00000559340 PTPN23Q9H3S7 1636 aa14.1□□□□□ -0.15
LDLR-210ENST00000559340 SCAPERQ9BY12 1400 aa14.08□□□□□ -0.15
LDLR-210ENST00000559340 DENND4BO75064 1496 aaPredicted RBP14.08□□□□□ -0.16
LDLR-210ENST00000559340 SAMD9LQ8IVG5 1584 aa14.08□□□□□ -0.16
LDLR-210ENST00000559340 CAMSAP2Q08AD1 1489 aa14.06□□□□□ -0.16
LDLR-210ENST00000559340 ABCC1P33527 1531 aa14.06□□□□□ -0.16
LDLR-210ENST00000559340 FAM50AQ14320 339 aaKnown RBP14.06□□□□□ -0.16
LDLR-210ENST00000559340 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.06□□□□□ -0.16
LDLR-210ENST00000559340 TCOF1Q13428 1488 aaKnown RBP14.06□□□□□ -0.16
LDLR-210ENST00000559340 TSPY4P0CV99 314 aa14.05□□□□□ -0.16
LDLR-210ENST00000559340 TSPY10P0CW01 314 aa14.05□□□□□ -0.16
LDLR-210ENST00000559340 HNRNPMP52272 730 aaKnown RBP eCLIP14.05□□□□□ -0.16
LDLR-210ENST00000559340 ZNF644Q9H582 1327 aaPredicted RBP14.04□□□□□ -0.16
LDLR-210ENST00000559340 MYT1LQ9UL68 1186 aa14.03□□□□□ -0.16
LDLR-210ENST00000559340 RRBP1Q9P2E9 1410 aaKnown RBP14.03□□□□□ -0.16
LDLR-210ENST00000559340 ZNF518AQ6AHZ1 1483 aa14.03□□□□□ -0.16
LDLR-210ENST00000559340 SYCP2Q9BX26 1530 aa14.03□□□□□ -0.16
LDLR-210ENST00000559340 ARHGEF5Q12774 1597 aa14.03□□□□□ -0.16
LDLR-210ENST00000559340 RICTORQ6R327 1708 aa14.03□□□□□ -0.16
LDLR-210ENST00000559340 POGZQ7Z3K3 1410 aa14.01□□□□□ -0.17
LDLR-210ENST00000559340 RAPGEF3O95398 923 aa14.01□□□□□ -0.17
LDLR-210ENST00000559340 CCDC141Q6ZP82 1450 aa14□□□□□ -0.17
LDLR-210ENST00000559340 ARHGEF12Q9NZN5 1544 aa14□□□□□ -0.17
LDLR-210ENST00000559340 MBD5Q9P267 1494 aa13.99□□□□□ -0.17
LDLR-210ENST00000559340 SPAG9O60271 1321 aaKnown RBP13.99□□□□□ -0.17
LDLR-210ENST00000559340 AFAP1Q8N556 730 aa13.99□□□□□ -0.17
LDLR-210ENST00000559340 DNMT1P26358 1616 aaKnown RBP13.99□□□□□ -0.17
LDLR-210ENST00000559340 MAGI2Q86UL8 1455 aa13.99□□□□□ -0.17
LDLR-210ENST00000559340 TRAPPC8Q9Y2L5 1435 aa13.98□□□□□ -0.17
LDLR-210ENST00000559340 KDM5CP41229 1560 aa13.97□□□□□ -0.17
LDLR-210ENST00000559340 ZMYM4Q5VZL5 1548 aa13.97□□□□□ -0.17
LDLR-210ENST00000559340 ILDR1Q86SU0 546 aaPredicted RBP13.97□□□□□ -0.17
LDLR-210ENST00000559340 RTEL1-TNFRSF6BF6WH68 1400 aa13.97□□□□□ -0.17
LDLR-210ENST00000559340 CROCC2H7BZ55 1655 aa13.96□□□□□ -0.17
LDLR-210ENST00000559340 MLH3Q9UHC1 1453 aa13.96□□□□□ -0.17
LDLR-210ENST00000559340 DAPK1P53355 1430 aa13.96□□□□□ -0.18
LDLR-210ENST00000559340 HECW2Q9P2P5 1572 aa13.96□□□□□ -0.18
LDLR-210ENST00000559340 ABCC5O15440 1437 aa13.95□□□□□ -0.18
LDLR-210ENST00000559340 FRMPD1Q5SYB0 1578 aa13.95□□□□□ -0.18
LDLR-210ENST00000559340 MAST1Q9Y2H9 1570 aa13.95□□□□□ -0.18
LDLR-210ENST00000559340 SHANK2Q9UPX8 1470 aa13.94□□□□□ -0.18
LDLR-210ENST00000559340 ITGAEP38570 1179 aa13.93□□□□□ -0.18
LDLR-210ENST00000559340 ADGBQ8N7X0 1667 aa13.93□□□□□ -0.18
LDLR-210ENST00000559340 ATP7AQ04656 1500 aa13.93□□□□□ -0.18
LDLR-210ENST00000559340 ZFYVE16Q7Z3T8 1539 aa13.93□□□□□ -0.18
LDLR-210ENST00000559340 KIDINS220Q9ULH0 1771 aa13.93□□□□□ -0.18
LDLR-210ENST00000559340 ANKRD30AQ9BXX3 1397 aa13.93□□□□□ -0.18
LDLR-210ENST00000559340 C9orf84Q5VXU9 1444 aa13.92□□□□□ -0.18
LDLR-210ENST00000559340 TRIM26Q12899 539 aaPredicted RBP13.92□□□□□ -0.18
LDLR-210ENST00000559340 INO80Q9ULG1 1556 aaPredicted RBP13.91□□□□□ -0.18
LDLR-210ENST00000559340 CHIC2Q9UKJ5 165 aa13.9□□□□□ -0.18
LDLR-210ENST00000559340 ATP10AO60312 1499 aa13.89□□□□□ -0.19
LDLR-210ENST00000559340 ROCK1Q13464 1354 aa13.89□□□□□ -0.19
LDLR-210ENST00000559340 PLXNC1O60486 1568 aa13.88□□□□□ -0.19
LDLR-210ENST00000559340 ADGRL2O95490 1459 aa13.88□□□□□ -0.19
LDLR-210ENST00000559340 ARHGEF40Q8TER5 1519 aa13.88□□□□□ -0.19
LDLR-210ENST00000559340 RRP7BPQ9NSQ0 103 aa13.86□□□□□ -0.19
LDLR-210ENST00000559340 NCOA1Q15788 1441 aa13.86□□□□□ -0.19
LDLR-210ENST00000559340 DIP2CQ9Y2E4 1556 aa13.86□□□□□ -0.19
LDLR-210ENST00000559340 ABCA6Q8N139 1617 aa13.86□□□□□ -0.19
LDLR-210ENST00000559340 DUOX2Q9NRD8 1548 aa13.85□□□□□ -0.19
LDLR-210ENST00000559340 REREQ9P2R6 1566 aa13.85□□□□□ -0.19
LDLR-210ENST00000559340 YEATS2Q9ULM3 1422 aa13.85□□□□□ -0.19
LDLR-210ENST00000559340 A2MP01023 1474 aa13.85□□□□□ -0.19
LDLR-210ENST00000559340 ACIN1Q9UKV3 1341 aaKnown RBP13.85□□□□□ -0.19
LDLR-210ENST00000559340 DHX29Q7Z478 1369 aaKnown RBP13.84□□□□□ -0.19
LDLR-210ENST00000559340 KIF15Q9NS87 1388 aa13.84□□□□□ -0.19
LDLR-210ENST00000559340 PTPRKQ15262 1439 aa13.84□□□□□ -0.19
LDLR-210ENST00000559340 ARID4BQ4LE39 1312 aaPredicted RBP13.83□□□□□ -0.2
LDLR-210ENST00000559340 PTPRMP28827 1452 aa13.81□□□□□ -0.2
LDLR-210ENST00000559340 AGLP35573 1532 aa13.81□□□□□ -0.2
LDLR-210ENST00000559340 ERBINQ96RT1 1412 aa13.81□□□□□ -0.2
LDLR-210ENST00000559340 EIF2AK4Q9P2K8 1649 aaKnown RBP13.8□□□□□ -0.2
LDLR-210ENST00000559340 GCC2Q8IWJ2 1684 aa13.8□□□□□ -0.2
LDLR-210ENST00000559340 ANKRD50Q9ULJ7 1429 aa13.8□□□□□ -0.2
LDLR-210ENST00000559340 ADAMTSL3P82987 1691 aa13.79□□□□□ -0.2
LDLR-210ENST00000559340 KIF3BO15066 747 aa13.79□□□□□ -0.2
LDLR-210ENST00000559340 PPP6R1Q9UPN7 881 aa13.79□□□□□ -0.2
LDLR-210ENST00000559340 HFM1A2PYH4 1435 aa13.78□□□□□ -0.2
LDLR-210ENST00000559340 BCORL1Q5H9F3 1711 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms