RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 TTC37Q6PGP7 1564 aa6.88□□□□□ -1.31
SNX1-205ENST00000559339 CFAP74Q9C0B2 1584 aa6.88□□□□□ -1.31
SNX1-205ENST00000559339 ADGRL1O94910 1474 aa6.88□□□□□ -1.31
SNX1-205ENST00000559339 SCAPERQ9BY12 1400 aa6.88□□□□□ -1.31
SNX1-205ENST00000559339 ARID4BQ4LE39 1312 aaPredicted RBP6.88□□□□□ -1.31
SNX1-205ENST00000559339 CFDP1Q9UEE9 299 aaPredicted RBP6.88□□□□□ -1.31
SNX1-205ENST00000559339 ARHGAP5Q13017 1502 aa6.87□□□□□ -1.31
SNX1-205ENST00000559339 VPS8Q8N3P4 1428 aa6.87□□□□□ -1.31
SNX1-205ENST00000559339 CCNB3Q8WWL7 1395 aa6.87□□□□□ -1.31
SNX1-205ENST00000559339 KDM4FA0A1W2PPD8 638 aa6.87□□□□□ -1.31
SNX1-205ENST00000559339 ZNF777Q9ULD5 760 aaPredicted RBP6.87□□□□□ -1.31
SNX1-205ENST00000559339 MAGI2Q86UL8 1455 aa6.85□□□□□ -1.31
SNX1-205ENST00000559339 POGZQ7Z3K3 1410 aa6.85□□□□□ -1.31
SNX1-205ENST00000559339 AFAP1Q8N556 730 aa6.85□□□□□ -1.31
SNX1-205ENST00000559339 ZNF518AQ6AHZ1 1483 aa6.85□□□□□ -1.31
SNX1-205ENST00000559339 MYO5CQ9NQX4 1742 aa6.84□□□□□ -1.31
SNX1-205ENST00000559339 EHBP1L1Q8N3D4 1523 aa6.83□□□□□ -1.32
SNX1-205ENST00000559339 GPATCH8Q9UKJ3 1502 aaKnown RBP6.83□□□□□ -1.32
SNX1-205ENST00000559339 LRRIQ1Q96JM4 1722 aa6.82□□□□□ -1.32
SNX1-205ENST00000559339 PLEKHH2Q8IVE3 1493 aa6.82□□□□□ -1.32
SNX1-205ENST00000559339 HNRNPMP52272 730 aaKnown RBP eCLIP6.82□□□□□ -1.32
SNX1-205ENST00000559339 RSPH4AQ5TD94 716 aa6.82□□□□□ -1.32
SNX1-205ENST00000559339 ZMYM4Q5VZL5 1548 aa6.81□□□□□ -1.32
SNX1-205ENST00000559339 ZFYVE16Q7Z3T8 1539 aa6.81□□□□□ -1.32
SNX1-205ENST00000559339 SPAG9O60271 1321 aaKnown RBP6.81□□□□□ -1.32
SNX1-205ENST00000559339 ESF1Q9H501 851 aaKnown RBP6.81□□□□□ -1.32
SNX1-205ENST00000559339 KIAA1107Q9UPP5 1409 aa6.81□□□□□ -1.32
SNX1-205ENST00000559339 FRMPD1Q5SYB0 1578 aa6.81□□□□□ -1.32
SNX1-205ENST00000559339 MAP3K1Q13233 1512 aa6.81□□□□□ -1.32
SNX1-205ENST00000559339 ATP10AO60312 1499 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 LRRC9Q6ZRR7 1453 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 PREX2Q70Z35 1606 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 TSPY4P0CV99 314 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 TSPY10P0CW01 314 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 TIAM1Q13009 1591 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 MLECQ14165 292 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 KANK4Q5T7N3 995 aaPredicted RBP6.8□□□□□ -1.32
SNX1-205ENST00000559339 C9orf84Q5VXU9 1444 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 RICTORQ6R327 1708 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 YEATS2Q9ULM3 1422 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 TRAPPC8Q9Y2L5 1435 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 ARHGEF40Q8TER5 1519 aa6.8□□□□□ -1.32
SNX1-205ENST00000559339 NCOA2Q15596 1464 aa6.79□□□□□ -1.32
SNX1-205ENST00000559339 MLH3Q9UHC1 1453 aa6.79□□□□□ -1.32
SNX1-205ENST00000559339 MSH5O43196 834 aa6.79□□□□□ -1.32
SNX1-205ENST00000559339 ABCC1P33527 1531 aa6.79□□□□□ -1.32
SNX1-205ENST00000559339 CDC42BPBQ9Y5S2 1711 aa6.79□□□□□ -1.32
SNX1-205ENST00000559339 ZNF644Q9H582 1327 aaPredicted RBP6.78□□□□□ -1.32
SNX1-205ENST00000559339 SYCP2Q9BX26 1530 aa6.78□□□□□ -1.32
SNX1-205ENST00000559339 ARHGEF12Q9NZN5 1544 aa6.78□□□□□ -1.32
SNX1-205ENST00000559339 SUPT6HQ7KZ85 1726 aaKnown RBP6.78□□□□□ -1.32
SNX1-205ENST00000559339 KDM5CP41229 1560 aa6.78□□□□□ -1.32
SNX1-205ENST00000559339 CDC42BPAQ5VT25 1732 aa6.77□□□□□ -1.33
SNX1-205ENST00000559339 HECW2Q9P2P5 1572 aa6.77□□□□□ -1.33
SNX1-205ENST00000559339 MIA2Q96PC5 1412 aa6.76□□□□□ -1.33
SNX1-205ENST00000559339 PTPRMP28827 1452 aa6.76□□□□□ -1.33
SNX1-205ENST00000559339 SAMD9LQ8IVG5 1584 aa6.76□□□□□ -1.33
SNX1-205ENST00000559339 ITSN2Q9NZM3 1697 aa6.76□□□□□ -1.33
SNX1-205ENST00000559339 MYOM3Q5VTT5 1437 aa6.76□□□□□ -1.33
SNX1-205ENST00000559339 CAMSAP2Q08AD1 1489 aa6.75□□□□□ -1.33
SNX1-205ENST00000559339 RTEL1-TNFRSF6BF6WH68 1400 aa6.75□□□□□ -1.33
SNX1-205ENST00000559339 CCDC141Q6ZP82 1450 aa6.74□□□□□ -1.33
SNX1-205ENST00000559339 MBD5Q9P267 1494 aa6.74□□□□□ -1.33
SNX1-205ENST00000559339 GGT6Q6P531 493 aa6.74□□□□□ -1.33
SNX1-205ENST00000559339 A2MP01023 1474 aa6.73□□□□□ -1.33
SNX1-205ENST00000559339 BCORL1Q5H9F3 1711 aa6.73□□□□□ -1.33
SNX1-205ENST00000559339 AGLP35573 1532 aa6.73□□□□□ -1.33
SNX1-205ENST00000559339 ATP7AQ04656 1500 aa6.73□□□□□ -1.33
SNX1-205ENST00000559339 ADAMTSL3P82987 1691 aa6.73□□□□□ -1.33
SNX1-205ENST00000559339 REREQ9P2R6 1566 aa6.73□□□□□ -1.33
SNX1-205ENST00000559339 DIP2CQ9Y2E4 1556 aa6.73□□□□□ -1.33
SNX1-205ENST00000559339 CNTLNQ9NXG0 1405 aa6.72□□□□□ -1.33
SNX1-205ENST00000559339 DHX29Q7Z478 1369 aaKnown RBP6.71□□□□□ -1.33
SNX1-205ENST00000559339 KIF3BO15066 747 aa6.71□□□□□ -1.34
SNX1-205ENST00000559339 CEBPAP49715 358 aaPredicted RBP6.71□□□□□ -1.34
SNX1-205ENST00000559339 FAM50AQ14320 339 aaKnown RBP6.71□□□□□ -1.34
SNX1-205ENST00000559339 KIDINS220Q9ULH0 1771 aa6.71□□□□□ -1.34
SNX1-205ENST00000559339 ABCA6Q8N139 1617 aa6.71□□□□□ -1.34
SNX1-205ENST00000559339 MADDQ8WXG6 1647 aa6.71□□□□□ -1.34
SNX1-205ENST00000559339 FGD6Q6ZV73 1430 aa6.7□□□□□ -1.34
SNX1-205ENST00000559339 WASHC2CQ9Y4E1 1318 aa6.7□□□□□ -1.34
SNX1-205ENST00000559339 ZMYM3Q14202 1370 aa6.69□□□□□ -1.34
SNX1-205ENST00000559339 ARHGEF5Q12774 1597 aa6.69□□□□□ -1.34
SNX1-205ENST00000559339 INO80Q9ULG1 1556 aaPredicted RBP6.69□□□□□ -1.34
SNX1-205ENST00000559339 RRP7BPQ9NSQ0 103 aa6.69□□□□□ -1.34
SNX1-205ENST00000559339 RIMS1Q86UR5 1692 aaKnown RBP6.68□□□□□ -1.34
SNX1-205ENST00000559339 PPARGC1BQ86YN6 1023 aaKnown RBP6.68□□□□□ -1.34
SNX1-205ENST00000559339 CHIC2Q9UKJ5 165 aa6.68□□□□□ -1.34
SNX1-205ENST00000559339 ANKRD30AQ9BXX3 1397 aa6.68□□□□□ -1.34
SNX1-205ENST00000559339 KIF15Q9NS87 1388 aa6.68□□□□□ -1.34
SNX1-205ENST00000559339 ABCC5O15440 1437 aa6.67□□□□□ -1.34
SNX1-205ENST00000559339 DAPK1P53355 1430 aa6.67□□□□□ -1.34
SNX1-205ENST00000559339 SIGLEC1Q9BZZ2 1709 aa6.67□□□□□ -1.34
SNX1-205ENST00000559339 FER1L4A9Z1Z3 1794 aa6.67□□□□□ -1.34
SNX1-205ENST00000559339 PLXNC1O60486 1568 aa6.67□□□□□ -1.34
SNX1-205ENST00000559339 PTPN23Q9H3S7 1636 aa6.67□□□□□ -1.34
SNX1-205ENST00000559339 ADGBQ8N7X0 1667 aa6.67□□□□□ -1.34
SNX1-205ENST00000559339 UHRF1BP1Q6BDS2 1440 aa6.67□□□□□ -1.34
SNX1-205ENST00000559339 TCOF1Q13428 1488 aaKnown RBP6.66□□□□□ -1.34
SNX1-205ENST00000559339 SHANK2Q9UPX8 1470 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms