RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 KTN1Q86UP2 1357 aaKnown RBP9.23□□□□□ -0.93
USP3-210ENST00000559192 SENP3Q9H4L4 574 aaPredicted RBP9.22□□□□□ -0.93
USP3-210ENST00000559192 NCLP19338 710 aaKnown RBP9.22□□□□□ -0.93
USP3-210ENST00000559192 RRP1P56182 461 aaKnown RBP9.22□□□□□ -0.93
USP3-210ENST00000559192 CCDC7Q96M83 1385 aa9.21□□□□□ -0.93
USP3-210ENST00000559192 FGD6Q6ZV73 1430 aa9.21□□□□□ -0.93
USP3-210ENST00000559192 AKNAQ7Z591 1439 aa9.21□□□□□ -0.94
USP3-210ENST00000559192 IGF1RP08069 1367 aa9.21□□□□□ -0.94
USP3-210ENST00000559192 UACAQ9BZF9 1416 aa9.21□□□□□ -0.94
USP3-210ENST00000559192 ROCK2O75116 1388 aaKnown RBP9.2□□□□□ -0.94
USP3-210ENST00000559192 KIF7Q2M1P5 1343 aa9.2□□□□□ -0.94
USP3-210ENST00000559192 ANO8Q9HCE9 1232 aaPredicted RBP9.2□□□□□ -0.94
USP3-210ENST00000559192 RALBP1Q15311 655 aa9.2□□□□□ -0.94
USP3-210ENST00000559192 CHMP7Q8WUX9 453 aaPredicted RBP9.2□□□□□ -0.94
USP3-210ENST00000559192 SLKQ9H2G2 1235 aaPredicted RBP9.2□□□□□ -0.94
USP3-210ENST00000559192 TDRD9Q8NDG6 1382 aaKnown RBP9.2□□□□□ -0.94
USP3-210ENST00000559192 TOP2BQ02880 1626 aa9.19□□□□□ -0.94
USP3-210ENST00000559192 IL27Q8NEV9 243 aa9.19□□□□□ -0.94
USP3-210ENST00000559192 PRXQ9BXM0 1461 aa9.19□□□□□ -0.94
USP3-210ENST00000559192 PLEKHD1A6NEE1 506 aa9.19□□□□□ -0.94
USP3-210ENST00000559192 TIAM1Q13009 1591 aa9.19□□□□□ -0.94
USP3-210ENST00000559192 SLC24A1O60721 1099 aa9.18□□□□□ -0.94
USP3-210ENST00000559192 CRBNQ96SW2 442 aa9.18□□□□□ -0.94
USP3-210ENST00000559192 GZF1Q9H116 711 aaPredicted RBP9.18□□□□□ -0.94
USP3-210ENST00000559192 USP47Q96K76 1375 aa9.17□□□□□ -0.94
USP3-210ENST00000559192 KIF15Q9NS87 1388 aa9.17□□□□□ -0.94
USP3-210ENST00000559192 MYBBP1AQ9BQG0 1328 aaKnown RBP9.17□□□□□ -0.94
USP3-210ENST00000559192 TMF1P82094 1093 aa9.17□□□□□ -0.94
USP3-210ENST00000559192 GSE1Q14687 1217 aa9.17□□□□□ -0.94
USP3-210ENST00000559192 ARID4BQ4LE39 1312 aaPredicted RBP9.17□□□□□ -0.94
USP3-210ENST00000559192 FTSJ3Q8IY81 847 aaKnown RBP9.17□□□□□ -0.94
USP3-210ENST00000559192 DNTTIP2Q5QJE6 756 aaKnown RBP9.16□□□□□ -0.94
USP3-210ENST00000559192 FGD5Q6ZNL6 1462 aa9.16□□□□□ -0.94
USP3-210ENST00000559192 USP35Q9P2H5 1018 aa9.16□□□□□ -0.94
USP3-210ENST00000559192 ST20-MTHFSA0A0A6YYL1 179 aa9.15□□□□□ -0.94
USP3-210ENST00000559192 CCDC146Q8IYE0 955 aa9.15□□□□□ -0.94
USP3-210ENST00000559192 NUP155O75694 1391 aa9.15□□□□□ -0.94
USP3-210ENST00000559192 MAPKBP1O60336 1514 aa9.15□□□□□ -0.94
USP3-210ENST00000559192 MYOM3Q5VTT5 1437 aa9.14□□□□□ -0.95
USP3-210ENST00000559192 L1TD1Q5T7N2 865 aaKnown RBP9.14□□□□□ -0.95
USP3-210ENST00000559192 CUX1P39880 1505 aa9.14□□□□□ -0.95
USP3-210ENST00000559192 NLRP13Q86W25 1043 aa9.14□□□□□ -0.95
USP3-210ENST00000559192 NCOA2Q15596 1464 aa9.13□□□□□ -0.95
USP3-210ENST00000559192 RAD54L2Q9Y4B4 1467 aa9.13□□□□□ -0.95
USP3-210ENST00000559192 CADPSQ9ULU8 1353 aa9.13□□□□□ -0.95
USP3-210ENST00000559192 CDCA8Q53HL2 280 aa9.12□□□□□ -0.95
USP3-210ENST00000559192 PTMAP06454 111 aaKnown RBP9.12□□□□□ -0.95
USP3-210ENST00000559192 BRPF3Q9ULD4 1205 aa9.12□□□□□ -0.95
USP3-210ENST00000559192 CASKIN1Q8WXD9 1431 aa9.12□□□□□ -0.95
USP3-210ENST00000559192 PDE3BQ13370 1112 aa9.12□□□□□ -0.95
USP3-210ENST00000559192 HSP90AB1P08238 724 aaKnown RBP9.11□□□□□ -0.95
USP3-210ENST00000559192 TPRNQ4KMQ1 711 aa9.11□□□□□ -0.95
USP3-210ENST00000559192 FYCO1Q9BQS8 1478 aa9.11□□□□□ -0.95
USP3-210ENST00000559192 FAM161AQ3B820 660 aa9.11□□□□□ -0.95
USP3-210ENST00000559192 NBPF8Q3BBV2 869 aa9.11□□□□□ -0.95
USP3-210ENST00000559192 PCF11O94913 1555 aaKnown RBP9.1□□□□□ -0.95
USP3-210ENST00000559192 HSCBQ8IWL3 235 aa9.1□□□□□ -0.95
USP3-210ENST00000559192 ANKRD30AQ9BXX3 1397 aa9.1□□□□□ -0.95
USP3-210ENST00000559192 GOLGA6L22H0YM25 854 aa9.1□□□□□ -0.95
USP3-210ENST00000559192 NFKBIBQ15653 356 aa9.1□□□□□ -0.95
USP3-210ENST00000559192 C11orf95C9JLR9 678 aaPredicted RBP9.1□□□□□ -0.95
USP3-210ENST00000559192 MS4A1P11836 297 aa9.1□□□□□ -0.95
USP3-210ENST00000559192 GOLGA2Q08379 1002 aa9.1□□□□□ -0.95
USP3-210ENST00000559192 MYH16Q9H6N6 1097 aa9.1□□□□□ -0.95
USP3-210ENST00000559192 ZNF644Q9H582 1327 aaPredicted RBP9.1□□□□□ -0.95
USP3-210ENST00000559192 CFTRP13569 1480 aa9.09□□□□□ -0.95
USP3-210ENST00000559192 CENPQQ7L2Z9 268 aaPredicted RBP9.09□□□□□ -0.95
USP3-210ENST00000559192 PANK3Q9H999 370 aa9.09□□□□□ -0.95
USP3-210ENST00000559192 CDCA7LQ96GN5 454 aa9.09□□□□□ -0.95
USP3-210ENST00000559192 SMG6Q86US8 1419 aaKnown RBP9.09□□□□□ -0.95
USP3-210ENST00000559192 CFAP53Q96M91 514 aa9.09□□□□□ -0.95
USP3-210ENST00000559192 PRKCSHP14314 528 aaPredicted RBP9.08□□□□□ -0.96
USP3-210ENST00000559192 FANCD2Q9BXW9 1451 aa9.08□□□□□ -0.96
USP3-210ENST00000559192 HFM1A2PYH4 1435 aa9.08□□□□□ -0.96
USP3-210ENST00000559192 GOLGA6L3A6NEY3 463 aa9.08□□□□□ -0.96
USP3-210ENST00000559192 MFAP1P55081 439 aaKnown RBP9.08□□□□□ -0.96
USP3-210ENST00000559192 HNRNPMP52272 730 aaKnown RBP eCLIP9.07□□□□□ -0.968e-7■■■■■ 27.1
USP3-210ENST00000559192 SKAP1Q86WV1 359 aa9.07□□□□□ -0.96
USP3-210ENST00000559192 PNNQ9H307 717 aaKnown RBP9.06□□□□□ -0.96
USP3-210ENST00000559192 CLUAP1Q96AJ1 413 aa9.06□□□□□ -0.96
USP3-210ENST00000559192 U2SURPO15042 1029 aaKnown RBP9.06□□□□□ -0.96
USP3-210ENST00000559192 ZBTB7CA1YPR0 619 aa9.05□□□□□ -0.96
USP3-210ENST00000559192 VSIG10Q8N0Z9 540 aa9.05□□□□□ -0.96
USP3-210ENST00000559192 TNNT3P45378 269 aaPredicted RBP9.05□□□□□ -0.96
USP3-210ENST00000559192 RSPH6AQ9H0K4 717 aa9.05□□□□□ -0.96
USP3-210ENST00000559192 ARID3AQ99856 593 aa9.05□□□□□ -0.96
USP3-210ENST00000559192 FOXD4L1Q9NU39 408 aa9.05□□□□□ -0.96
USP3-210ENST00000559192 MORC1Q86VD1 984 aa9.04□□□□□ -0.96
USP3-210ENST00000559192 MAPK8IP3Q9UPT6 1336 aa9.04□□□□□ -0.96
USP3-210ENST00000559192 BACH2Q9BYV9 841 aa9.04□□□□□ -0.96
USP3-210ENST00000559192 NAIPQ13075 1403 aa9.04□□□□□ -0.96
USP3-210ENST00000559192 RRP7AQ9Y3A4 280 aaKnown RBP9.04□□□□□ -0.96
USP3-210ENST00000559192 CENPJQ9HC77 1338 aaPredicted RBP9.04□□□□□ -0.96
USP3-210ENST00000559192 ITPRIPQ8IWB1 547 aa9.03□□□□□ -0.96
USP3-210ENST00000559192 FRAT2O75474 233 aaPredicted RBP9.03□□□□□ -0.96
USP3-210ENST00000559192 PNISRQ8TF01 805 aaKnown RBP9.03□□□□□ -0.96
USP3-210ENST00000559192 BCL2L13Q9BXK5 485 aa9.03□□□□□ -0.96
USP3-210ENST00000559192 STAG3Q9UJ98 1225 aa9.03□□□□□ -0.96
USP3-210ENST00000559192 RWDD1Q9H446 243 aaPredicted RBP9.02□□□□□ -0.96
USP3-210ENST00000559192 COG6Q9Y2V7 657 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms