RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 CFAP74Q9C0B2 1584 aa18.17■□□□□ 0.5
SNX1-204ENST00000559061 SUPT6HQ7KZ85 1726 aaKnown RBP18.16■□□□□ 0.5
SNX1-204ENST00000559061 RICTORQ6R327 1708 aa18.15■□□□□ 0.5
SNX1-204ENST00000559061 NCOA2Q15596 1464 aa18.15■□□□□ 0.5
SNX1-204ENST00000559061 AKNAQ7Z591 1439 aa18.14■□□□□ 0.49
SNX1-204ENST00000559061 ARHGAP5Q13017 1502 aa18.13■□□□□ 0.49
SNX1-204ENST00000559061 SAMD9LQ8IVG5 1584 aa18.13■□□□□ 0.49
SNX1-204ENST00000559061 ABCC1P33527 1531 aa18.11■□□□□ 0.49
SNX1-204ENST00000559061 ARHGEF12Q9NZN5 1544 aa18.11■□□□□ 0.49
SNX1-204ENST00000559061 ITSN2Q9NZM3 1697 aa18.1■□□□□ 0.49
SNX1-204ENST00000559061 PHLDB1Q86UU1 1377 aa18.09■□□□□ 0.49
SNX1-204ENST00000559061 ADGRL1O94910 1474 aa18.08■□□□□ 0.49
SNX1-204ENST00000559061 ZMYM4Q5VZL5 1548 aa18.06■□□□□ 0.48
SNX1-204ENST00000559061 POGZQ7Z3K3 1410 aa18.06■□□□□ 0.48
SNX1-204ENST00000559061 CCNB3Q8WWL7 1395 aa18.05■□□□□ 0.48
SNX1-204ENST00000559061 KDM5CP41229 1560 aa18.04■□□□□ 0.48
SNX1-204ENST00000559061 DENND4BO75064 1496 aaPredicted RBP18.04■□□□□ 0.48
SNX1-204ENST00000559061 RAPGEF3O95398 923 aa18.04■□□□□ 0.48
SNX1-204ENST00000559061 SCAPERQ9BY12 1400 aa18.04■□□□□ 0.48
SNX1-204ENST00000559061 SYCP2Q9BX26 1530 aa18.03■□□□□ 0.48
SNX1-204ENST00000559061 EFCAB2Q5VUJ9 269 aa18.03■□□□□ 0.48
SNX1-204ENST00000559061 TRAPPC8Q9Y2L5 1435 aa18.02■□□□□ 0.48
SNX1-204ENST00000559061 SIGLEC1Q9BZZ2 1709 aa18.01■□□□□ 0.47
SNX1-204ENST00000559061 ZNF644Q9H582 1327 aaPredicted RBP18■□□□□ 0.47
SNX1-204ENST00000559061 ARHGEF40Q8TER5 1519 aa17.99■□□□□ 0.47
SNX1-204ENST00000559061 CAMSAP2Q08AD1 1489 aa17.99■□□□□ 0.47
SNX1-204ENST00000559061 MBD5Q9P267 1494 aa17.99■□□□□ 0.47
SNX1-204ENST00000559061 MYOM3Q5VTT5 1437 aa17.98■□□□□ 0.47
SNX1-204ENST00000559061 CFDP1Q9UEE9 299 aaPredicted RBP17.97■□□□□ 0.47
SNX1-204ENST00000559061 YEATS2Q9ULM3 1422 aa17.97■□□□□ 0.47
SNX1-204ENST00000559061 KIAA1107Q9UPP5 1409 aa17.97■□□□□ 0.47
SNX1-204ENST00000559061 ZNF518AQ6AHZ1 1483 aa17.96■□□□□ 0.47
SNX1-204ENST00000559061 KIDINS220Q9ULH0 1771 aa17.95■□□□□ 0.46
SNX1-204ENST00000559061 HECW2Q9P2P5 1572 aa17.95■□□□□ 0.46
SNX1-204ENST00000559061 ABCA6Q8N139 1617 aa17.94■□□□□ 0.46
SNX1-204ENST00000559061 APLP2Q06481 763 aa17.94■□□□□ 0.46
SNX1-204ENST00000559061 AFAP1Q8N556 730 aa17.94■□□□□ 0.46
SNX1-204ENST00000559061 INO80Q9ULG1 1556 aaPredicted RBP17.94■□□□□ 0.46
SNX1-204ENST00000559061 ZFYVE16Q7Z3T8 1539 aa17.93■□□□□ 0.46
SNX1-204ENST00000559061 ZNF777Q9ULD5 760 aaPredicted RBP17.93■□□□□ 0.46
SNX1-204ENST00000559061 PTPN23Q9H3S7 1636 aa17.93■□□□□ 0.46
SNX1-204ENST00000559061 PLEKHH2Q8IVE3 1493 aa17.93■□□□□ 0.46
SNX1-204ENST00000559061 DIP2CQ9Y2E4 1556 aa17.92■□□□□ 0.46
SNX1-204ENST00000559061 MIA2Q96PC5 1412 aa17.92■□□□□ 0.46
SNX1-204ENST00000559061 ARHGEF5Q12774 1597 aa17.91■□□□□ 0.46
SNX1-204ENST00000559061 FGD6Q6ZV73 1430 aa17.91■□□□□ 0.46
SNX1-204ENST00000559061 TCOF1Q13428 1488 aaKnown RBP17.91■□□□□ 0.46
SNX1-204ENST00000559061 MAGI2Q86UL8 1455 aa17.91■□□□□ 0.46
SNX1-204ENST00000559061 MLH3Q9UHC1 1453 aa17.91■□□□□ 0.46
SNX1-204ENST00000559061 HNRNPMP52272 730 aaKnown RBP eCLIP17.91■□□□□ 0.46
SNX1-204ENST00000559061 PPARGC1BQ86YN6 1023 aaKnown RBP17.9■□□□□ 0.46
SNX1-204ENST00000559061 SENP3Q9H4L4 574 aaPredicted RBP17.9■□□□□ 0.46
SNX1-204ENST00000559061 CROCC2H7BZ55 1655 aa17.87■□□□□ 0.45
SNX1-204ENST00000559061 ATP7AQ04656 1500 aa17.87■□□□□ 0.45
SNX1-204ENST00000559061 CCDC141Q6ZP82 1450 aa17.86■□□□□ 0.45
SNX1-204ENST00000559061 REREQ9P2R6 1566 aa17.85■□□□□ 0.45
SNX1-204ENST00000559061 ADGBQ8N7X0 1667 aa17.84■□□□□ 0.45
SNX1-204ENST00000559061 DNMT1P26358 1616 aaKnown RBP17.84■□□□□ 0.45
SNX1-204ENST00000559061 MAST1Q9Y2H9 1570 aa17.83■□□□□ 0.45
SNX1-204ENST00000559061 PLXNC1O60486 1568 aa17.83■□□□□ 0.44
SNX1-204ENST00000559061 ATP10AO60312 1499 aa17.82■□□□□ 0.44
SNX1-204ENST00000559061 ABCC5O15440 1437 aa17.81■□□□□ 0.44
SNX1-204ENST00000559061 BCORL1Q5H9F3 1711 aa17.81■□□□□ 0.44
SNX1-204ENST00000559061 C9orf84Q5VXU9 1444 aa17.81■□□□□ 0.44
SNX1-204ENST00000559061 ADAMTSL3P82987 1691 aa17.8■□□□□ 0.44
SNX1-204ENST00000559061 KDM4FA0A1W2PPD8 638 aa17.79■□□□□ 0.44
SNX1-204ENST00000559061 SPAG9O60271 1321 aaKnown RBP17.78■□□□□ 0.44
SNX1-204ENST00000559061 RTEL1-TNFRSF6BF6WH68 1400 aa17.78■□□□□ 0.44
SNX1-204ENST00000559061 DAPK1P53355 1430 aa17.78■□□□□ 0.44
SNX1-204ENST00000559061 SHANK2Q9UPX8 1470 aa17.77■□□□□ 0.44
SNX1-204ENST00000559061 RRBP1Q9P2E9 1410 aaKnown RBP17.76■□□□□ 0.43
SNX1-204ENST00000559061 AGLP35573 1532 aa17.76■□□□□ 0.43
SNX1-204ENST00000559061 PTPRKQ15262 1439 aa17.75■□□□□ 0.43
SNX1-204ENST00000559061 MADDQ8WXG6 1647 aa17.73■□□□□ 0.43
SNX1-204ENST00000559061 A2MP01023 1474 aa17.73■□□□□ 0.43
SNX1-204ENST00000559061 RSPH4AQ5TD94 716 aa17.71■□□□□ 0.43
SNX1-204ENST00000559061 ADGRL2O95490 1459 aa17.69■□□□□ 0.42
SNX1-204ENST00000559061 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.69■□□□□ 0.42
SNX1-204ENST00000559061 FER1L4A9Z1Z3 1794 aa17.68■□□□□ 0.42
SNX1-204ENST00000559061 FAM50AQ14320 339 aaKnown RBP17.67■□□□□ 0.42
SNX1-204ENST00000559061 RIMS1Q86UR5 1692 aaKnown RBP17.67■□□□□ 0.42
SNX1-204ENST00000559061 MROH1Q8NDA8 1641 aa17.66■□□□□ 0.42
SNX1-204ENST00000559061 MYT1LQ9UL68 1186 aa17.66■□□□□ 0.42
SNX1-204ENST00000559061 DHX29Q7Z478 1369 aaKnown RBP17.66■□□□□ 0.42
SNX1-204ENST00000559061 NCOA1Q15788 1441 aa17.64■□□□□ 0.42
SNX1-204ENST00000559061 RNF17Q9BXT8 1623 aaKnown RBP17.64■□□□□ 0.41
SNX1-204ENST00000559061 EIF2AK4Q9P2K8 1649 aaKnown RBP17.64■□□□□ 0.41
SNX1-204ENST00000559061 DUOX2Q9NRD8 1548 aa17.63■□□□□ 0.41
SNX1-204ENST00000559061 TSPY4P0CV99 314 aa17.63■□□□□ 0.41
SNX1-204ENST00000559061 TSPY10P0CW01 314 aa17.63■□□□□ 0.41
SNX1-204ENST00000559061 ARID4BQ4LE39 1312 aaPredicted RBP17.63■□□□□ 0.41
SNX1-204ENST00000559061 KIF15Q9NS87 1388 aa17.62■□□□□ 0.41
SNX1-204ENST00000559061 PTPRMP28827 1452 aa17.61■□□□□ 0.41
SNX1-204ENST00000559061 MLECQ14165 292 aa17.6■□□□□ 0.41
SNX1-204ENST00000559061 CHIC2Q9UKJ5 165 aa17.6■□□□□ 0.41
SNX1-204ENST00000559061 DEPDC5O75140 1603 aa17.6■□□□□ 0.41
SNX1-204ENST00000559061 PHF23Q9BUL5 403 aaPredicted RBP17.59■□□□□ 0.41
SNX1-204ENST00000559061 CLTCQ00610 1675 aaKnown RBP17.58■□□□□ 0.41
SNX1-204ENST00000559061 ERBINQ96RT1 1412 aa17.57■□□□□ 0.4
SNX1-204ENST00000559061 ANKRD30AQ9BXX3 1397 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms