RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 PLEKHD1A6NEE1 506 aa19.45■□□□□ 0.7
TPM1-216ENST00000558910 CDK13Q14004 1512 aaKnown RBP19.44■□□□□ 0.7
TPM1-216ENST00000558910 LOC105371045A0A1W2PR82 267 aa19.41■□□□□ 0.7
TPM1-216ENST00000558910 TEX14Q8IWB6 1497 aa19.41■□□□□ 0.7
TPM1-216ENST00000558910 FMN1Q68DA7 1419 aa19.4■□□□□ 0.7
TPM1-216ENST00000558910 COL17A1Q9UMD9 1497 aaPredicted RBP19.4■□□□□ 0.7
TPM1-216ENST00000558910 CLIP1P30622 1438 aa19.38■□□□□ 0.69
TPM1-216ENST00000558910 CFAP43Q8NDM7 1665 aa19.36■□□□□ 0.69
TPM1-216ENST00000558910 HECW1Q76N89 1606 aa19.33■□□□□ 0.69
TPM1-216ENST00000558910 MAGI3Q5TCQ9 1506 aa19.32■□□□□ 0.68
TPM1-216ENST00000558910 ABCA9Q8IUA7 1624 aa19.29■□□□□ 0.68
TPM1-216ENST00000558910 RAPGEF3O95398 923 aa19.29■□□□□ 0.68
TPM1-216ENST00000558910 CDK11AQ9UQ88 783 aaPredicted RBP19.29■□□□□ 0.68
TPM1-216ENST00000558910 PCF11O94913 1555 aaKnown RBP19.28■□□□□ 0.68
TPM1-216ENST00000558910 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.25■□□□□ 0.67
TPM1-216ENST00000558910 POLA2Q14181 598 aa19.25■□□□□ 0.67
TPM1-216ENST00000558910 CEP162Q5TB80 1403 aa19.25■□□□□ 0.67
TPM1-216ENST00000558910 TTC37Q6PGP7 1564 aa19.24■□□□□ 0.67
TPM1-216ENST00000558910 CASKIN1Q8WXD9 1431 aa19.24■□□□□ 0.67
TPM1-216ENST00000558910 KDM4FA0A1W2PPD8 638 aa19.22■□□□□ 0.67
TPM1-216ENST00000558910 ATXN8OSP0DMR3 200 aa19.22■□□□□ 0.67
TPM1-216ENST00000558910 LRRIQ1Q96JM4 1722 aa19.22■□□□□ 0.67
TPM1-216ENST00000558910 TROQ12816 1431 aaPredicted RBP19.19■□□□□ 0.66
TPM1-216ENST00000558910 KIF14Q15058 1648 aa19.19■□□□□ 0.66
TPM1-216ENST00000558910 FANCAO15360 1455 aa19.18■□□□□ 0.66
TPM1-216ENST00000558910 AKNAQ7Z591 1439 aa19.17■□□□□ 0.66
TPM1-216ENST00000558910 NEO1Q92859 1461 aa19.16■□□□□ 0.66
TPM1-216ENST00000558910 CCDC18Q5T9S5 1454 aa19.16■□□□□ 0.66
TPM1-216ENST00000558910 FYCO1Q9BQS8 1478 aa19.16■□□□□ 0.66
TPM1-216ENST00000558910 ARAP3Q8WWN8 1544 aa19.15■□□□□ 0.66
TPM1-216ENST00000558910 EFCAB2Q5VUJ9 269 aa19.13■□□□□ 0.65
TPM1-216ENST00000558910 MYT1LQ9UL68 1186 aa19.13■□□□□ 0.65
TPM1-216ENST00000558910 ZNF777Q9ULD5 760 aaPredicted RBP19.13■□□□□ 0.65
TPM1-216ENST00000558910 ARID4BQ4LE39 1312 aaPredicted RBP19.13■□□□□ 0.65
TPM1-216ENST00000558910 ADGRL1O94910 1474 aa19.13■□□□□ 0.65
TPM1-216ENST00000558910 DENND4BO75064 1496 aaPredicted RBP19.12■□□□□ 0.65
TPM1-216ENST00000558910 PLCH2O75038 1416 aa19.12■□□□□ 0.65
TPM1-216ENST00000558910 PHLDB1Q86UU1 1377 aa19.12■□□□□ 0.65
TPM1-216ENST00000558910 ARHGAP5Q13017 1502 aa19.1■□□□□ 0.65
TPM1-216ENST00000558910 SCAPERQ9BY12 1400 aa19.1■□□□□ 0.65
TPM1-216ENST00000558910 MTUS2Q5JR59 1369 aa19.08■□□□□ 0.65
TPM1-216ENST00000558910 MYO5CQ9NQX4 1742 aa19.08■□□□□ 0.64
TPM1-216ENST00000558910 FRMPD1Q5SYB0 1578 aa19.07■□□□□ 0.64
TPM1-216ENST00000558910 CFAP74Q9C0B2 1584 aa19.07■□□□□ 0.64
TPM1-216ENST00000558910 MLECQ14165 292 aa19.03■□□□□ 0.64
TPM1-216ENST00000558910 AFAP1Q8N556 730 aa19.03■□□□□ 0.64
TPM1-216ENST00000558910 YEATS2Q9ULM3 1422 aa19.01■□□□□ 0.63
TPM1-216ENST00000558910 RICTORQ6R327 1708 aa19■□□□□ 0.63
TPM1-216ENST00000558910 POGZQ7Z3K3 1410 aa19■□□□□ 0.63
TPM1-216ENST00000558910 CCNB3Q8WWL7 1395 aa18.99■□□□□ 0.63
TPM1-216ENST00000558910 CDC42BPBQ9Y5S2 1711 aa18.98■□□□□ 0.63
TPM1-216ENST00000558910 CFDP1Q9UEE9 299 aaPredicted RBP18.98■□□□□ 0.63
TPM1-216ENST00000558910 VPS8Q8N3P4 1428 aa18.98■□□□□ 0.63
TPM1-216ENST00000558910 HNRNPMP52272 730 aaKnown RBP eCLIP18.97■□□□□ 0.63
TPM1-216ENST00000558910 ZFYVE16Q7Z3T8 1539 aa18.96■□□□□ 0.63
TPM1-216ENST00000558910 PREX2Q70Z35 1606 aa18.96■□□□□ 0.63
TPM1-216ENST00000558910 GPATCH8Q9UKJ3 1502 aaKnown RBP18.95■□□□□ 0.62
TPM1-216ENST00000558910 CDC42BPAQ5VT25 1732 aa18.94■□□□□ 0.62
TPM1-216ENST00000558910 TRAPPC8Q9Y2L5 1435 aa18.94■□□□□ 0.62
TPM1-216ENST00000558910 ARHGEF40Q8TER5 1519 aa18.94■□□□□ 0.62
TPM1-216ENST00000558910 ARHGEF12Q9NZN5 1544 aa18.93■□□□□ 0.62
TPM1-216ENST00000558910 ZNF644Q9H582 1327 aaPredicted RBP18.93■□□□□ 0.62
TPM1-216ENST00000558910 EHBP1L1Q8N3D4 1523 aa18.92■□□□□ 0.62
TPM1-216ENST00000558910 KANK4Q5T7N3 995 aaPredicted RBP18.91■□□□□ 0.62
TPM1-216ENST00000558910 ZNF518AQ6AHZ1 1483 aa18.9■□□□□ 0.62
TPM1-216ENST00000558910 ZMYM4Q5VZL5 1548 aa18.9■□□□□ 0.62
TPM1-216ENST00000558910 ABCC1P33527 1531 aa18.89■□□□□ 0.61
TPM1-216ENST00000558910 TIAM1Q13009 1591 aa18.89■□□□□ 0.61
TPM1-216ENST00000558910 SYCP2Q9BX26 1530 aa18.88■□□□□ 0.61
TPM1-216ENST00000558910 SAMD9LQ8IVG5 1584 aa18.88■□□□□ 0.61
TPM1-216ENST00000558910 NCOA2Q15596 1464 aa18.86■□□□□ 0.61
TPM1-216ENST00000558910 MAGI2Q86UL8 1455 aa18.86■□□□□ 0.61
TPM1-216ENST00000558910 ITSN2Q9NZM3 1697 aa18.85■□□□□ 0.61
TPM1-216ENST00000558910 ATP10AO60312 1499 aa18.85■□□□□ 0.61
TPM1-216ENST00000558910 SIGLEC1Q9BZZ2 1709 aa18.85■□□□□ 0.61
TPM1-216ENST00000558910 SPAG9O60271 1321 aaKnown RBP18.84■□□□□ 0.61
TPM1-216ENST00000558910 BCORL1Q5H9F3 1711 aa18.84■□□□□ 0.61
TPM1-216ENST00000558910 MADDQ8WXG6 1647 aa18.84■□□□□ 0.61
TPM1-216ENST00000558910 C9orf84Q5VXU9 1444 aa18.83■□□□□ 0.61
TPM1-216ENST00000558910 LRRC9Q6ZRR7 1453 aa18.83■□□□□ 0.6
TPM1-216ENST00000558910 SUPT6HQ7KZ85 1726 aaKnown RBP18.83■□□□□ 0.6
TPM1-216ENST00000558910 HECW2Q9P2P5 1572 aa18.82■□□□□ 0.6
TPM1-216ENST00000558910 ZBTB12Q9Y330 459 aaPredicted RBP18.82■□□□□ 0.6
TPM1-216ENST00000558910 KDM5CP41229 1560 aa18.81■□□□□ 0.6
TPM1-216ENST00000558910 PTPRMP28827 1452 aa18.81■□□□□ 0.6
TPM1-216ENST00000558910 ADAMTSL3P82987 1691 aa18.81■□□□□ 0.6
TPM1-216ENST00000558910 RIMS1Q86UR5 1692 aaKnown RBP18.8■□□□□ 0.6
TPM1-216ENST00000558910 DIP2CQ9Y2E4 1556 aa18.79■□□□□ 0.6
TPM1-216ENST00000558910 ABCA6Q8N139 1617 aa18.78■□□□□ 0.6
TPM1-216ENST00000558910 MLH3Q9UHC1 1453 aa18.77■□□□□ 0.6
TPM1-216ENST00000558910 CEBPAP49715 358 aaPredicted RBP18.77■□□□□ 0.6
TPM1-216ENST00000558910 PLEKHH2Q8IVE3 1493 aa18.77■□□□□ 0.59
TPM1-216ENST00000558910 PPARGC1BQ86YN6 1023 aaKnown RBP18.76■□□□□ 0.59
TPM1-216ENST00000558910 ESF1Q9H501 851 aaKnown RBP18.75■□□□□ 0.59
TPM1-216ENST00000558910 KIAA1107Q9UPP5 1409 aa18.74■□□□□ 0.59
TPM1-216ENST00000558910 KIDINS220Q9ULH0 1771 aa18.74■□□□□ 0.59
TPM1-216ENST00000558910 CAMSAP2Q08AD1 1489 aa18.74■□□□□ 0.59
TPM1-216ENST00000558910 ATP7AQ04656 1500 aa18.71■□□□□ 0.59
TPM1-216ENST00000558910 GGT6Q6P531 493 aa18.71■□□□□ 0.59
TPM1-216ENST00000558910 FER1L4A9Z1Z3 1794 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms