RNA–Protein interactions for RNA: ENST00000558471.5

LRRC28-206, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 793 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-206ENST00000558471 CFAP74Q9C0B2 1584 aa19.66■□□□□ 0.74
LRRC28-206ENST00000558471 ARHGAP5Q13017 1502 aa19.64■□□□□ 0.73
LRRC28-206ENST00000558471 PREX2Q70Z35 1606 aa19.64■□□□□ 0.73
LRRC28-206ENST00000558471 GPATCH8Q9UKJ3 1502 aaKnown RBP19.63■□□□□ 0.73
LRRC28-206ENST00000558471 RAPGEF3O95398 923 aa19.62■□□□□ 0.73
LRRC28-206ENST00000558471 SUPT6HQ7KZ85 1726 aaKnown RBP19.62■□□□□ 0.73
LRRC28-206ENST00000558471 CCNB3Q8WWL7 1395 aa19.61■□□□□ 0.73
LRRC28-206ENST00000558471 NCOA2Q15596 1464 aa19.6■□□□□ 0.73
LRRC28-206ENST00000558471 ADGRL1O94910 1474 aa19.59■□□□□ 0.73
LRRC28-206ENST00000558471 SCAPERQ9BY12 1400 aa19.59■□□□□ 0.73
LRRC28-206ENST00000558471 DENND4BO75064 1496 aaPredicted RBP19.58■□□□□ 0.72
LRRC28-206ENST00000558471 CFDP1Q9UEE9 299 aaPredicted RBP19.57■□□□□ 0.72
LRRC28-206ENST00000558471 RICTORQ6R327 1708 aa19.56■□□□□ 0.72
LRRC28-206ENST00000558471 ZNF777Q9ULD5 760 aaPredicted RBP19.56■□□□□ 0.72
LRRC28-206ENST00000558471 FRMPD1Q5SYB0 1578 aa19.56■□□□□ 0.72
LRRC28-206ENST00000558471 ITSN2Q9NZM3 1697 aa19.54■□□□□ 0.72
LRRC28-206ENST00000558471 SAMD9LQ8IVG5 1584 aa19.53■□□□□ 0.72
LRRC28-206ENST00000558471 ARHGEF12Q9NZN5 1544 aa19.51■□□□□ 0.71
LRRC28-206ENST00000558471 ABCC1P33527 1531 aa19.51■□□□□ 0.71
LRRC28-206ENST00000558471 POGZQ7Z3K3 1410 aa19.51■□□□□ 0.71
LRRC28-206ENST00000558471 ZNF644Q9H582 1327 aaPredicted RBP19.5■□□□□ 0.71
LRRC28-206ENST00000558471 AFAP1Q8N556 730 aa19.49■□□□□ 0.71
LRRC28-206ENST00000558471 HNRNPMP52272 730 aaKnown RBP eCLIP19.47■□□□□ 0.71
LRRC28-206ENST00000558471 TRAPPC8Q9Y2L5 1435 aa19.47■□□□□ 0.71
LRRC28-206ENST00000558471 ZMYM4Q5VZL5 1548 aa19.46■□□□□ 0.71
LRRC28-206ENST00000558471 ZNF518AQ6AHZ1 1483 aa19.46■□□□□ 0.71
LRRC28-206ENST00000558471 SYCP2Q9BX26 1530 aa19.46■□□□□ 0.71
LRRC28-206ENST00000558471 KIAA1107Q9UPP5 1409 aa19.45■□□□□ 0.7
LRRC28-206ENST00000558471 PLEKHH2Q8IVE3 1493 aa19.45■□□□□ 0.7
LRRC28-206ENST00000558471 MYOM3Q5VTT5 1437 aa19.44■□□□□ 0.7
LRRC28-206ENST00000558471 KDM5CP41229 1560 aa19.43■□□□□ 0.7
LRRC28-206ENST00000558471 MAGI2Q86UL8 1455 aa19.42■□□□□ 0.7
LRRC28-206ENST00000558471 PPARGC1BQ86YN6 1023 aaKnown RBP19.42■□□□□ 0.7
LRRC28-206ENST00000558471 YEATS2Q9ULM3 1422 aa19.42■□□□□ 0.7
LRRC28-206ENST00000558471 MIA2Q96PC5 1412 aa19.41■□□□□ 0.7
LRRC28-206ENST00000558471 CAMSAP2Q08AD1 1489 aa19.41■□□□□ 0.7
LRRC28-206ENST00000558471 ZFYVE16Q7Z3T8 1539 aa19.41■□□□□ 0.7
LRRC28-206ENST00000558471 MBD5Q9P267 1494 aa19.4■□□□□ 0.7
LRRC28-206ENST00000558471 MYT1LQ9UL68 1186 aa19.39■□□□□ 0.69
LRRC28-206ENST00000558471 ARHGEF40Q8TER5 1519 aa19.39■□□□□ 0.69
LRRC28-206ENST00000558471 HECW2Q9P2P5 1572 aa19.38■□□□□ 0.69
LRRC28-206ENST00000558471 MLH3Q9UHC1 1453 aa19.38■□□□□ 0.69
LRRC28-206ENST00000558471 KIDINS220Q9ULH0 1771 aa19.36■□□□□ 0.69
LRRC28-206ENST00000558471 SPAG9O60271 1321 aaKnown RBP19.35■□□□□ 0.69
LRRC28-206ENST00000558471 RSPH4AQ5TD94 716 aa19.34■□□□□ 0.69
LRRC28-206ENST00000558471 ATP10AO60312 1499 aa19.34■□□□□ 0.69
LRRC28-206ENST00000558471 FGD6Q6ZV73 1430 aa19.34■□□□□ 0.69
LRRC28-206ENST00000558471 PTPN23Q9H3S7 1636 aa19.33■□□□□ 0.69
LRRC28-206ENST00000558471 KDM4FA0A1W2PPD8 638 aa19.33■□□□□ 0.68
LRRC28-206ENST00000558471 SIGLEC1Q9BZZ2 1709 aa19.32■□□□□ 0.68
LRRC28-206ENST00000558471 ABCA6Q8N139 1617 aa19.32■□□□□ 0.68
LRRC28-206ENST00000558471 ARHGEF5Q12774 1597 aa19.32■□□□□ 0.68
LRRC28-206ENST00000558471 DIP2CQ9Y2E4 1556 aa19.32■□□□□ 0.68
LRRC28-206ENST00000558471 CCDC141Q6ZP82 1450 aa19.31■□□□□ 0.68
LRRC28-206ENST00000558471 ATP7AQ04656 1500 aa19.3■□□□□ 0.68
LRRC28-206ENST00000558471 ARID4BQ4LE39 1312 aaPredicted RBP19.3■□□□□ 0.68
LRRC28-206ENST00000558471 INO80Q9ULG1 1556 aaPredicted RBP19.3■□□□□ 0.68
LRRC28-206ENST00000558471 C9orf84Q5VXU9 1444 aa19.29■□□□□ 0.68
LRRC28-206ENST00000558471 TCOF1Q13428 1488 aaKnown RBP19.28■□□□□ 0.68
LRRC28-206ENST00000558471 TSPY4P0CV99 314 aa19.27■□□□□ 0.68
LRRC28-206ENST00000558471 TSPY10P0CW01 314 aa19.27■□□□□ 0.68
LRRC28-206ENST00000558471 RTEL1-TNFRSF6BF6WH68 1400 aa19.26■□□□□ 0.67
LRRC28-206ENST00000558471 REREQ9P2R6 1566 aa19.25■□□□□ 0.67
LRRC28-206ENST00000558471 BCORL1Q5H9F3 1711 aa19.25■□□□□ 0.67
LRRC28-206ENST00000558471 FAM50AQ14320 339 aaKnown RBP19.24■□□□□ 0.67
LRRC28-206ENST00000558471 ABCC5O15440 1437 aa19.23■□□□□ 0.67
LRRC28-206ENST00000558471 ADAMTSL3P82987 1691 aa19.22■□□□□ 0.67
LRRC28-206ENST00000558471 DNMT1P26358 1616 aaKnown RBP19.22■□□□□ 0.67
LRRC28-206ENST00000558471 ADGBQ8N7X0 1667 aa19.21■□□□□ 0.67
LRRC28-206ENST00000558471 MLECQ14165 292 aa19.21■□□□□ 0.67
LRRC28-206ENST00000558471 MAST1Q9Y2H9 1570 aa19.21■□□□□ 0.67
LRRC28-206ENST00000558471 DAPK1P53355 1430 aa19.2■□□□□ 0.66
LRRC28-206ENST00000558471 A2MP01023 1474 aa19.2■□□□□ 0.66
LRRC28-206ENST00000558471 CROCC2H7BZ55 1655 aa19.2■□□□□ 0.66
LRRC28-206ENST00000558471 AGLP35573 1532 aa19.2■□□□□ 0.66
LRRC28-206ENST00000558471 AEBP2Q6ZN18 517 aaPredicted RBP19.18■□□□□ 0.66
LRRC28-206ENST00000558471 PLXNC1O60486 1568 aa19.17■□□□□ 0.66
LRRC28-206ENST00000558471 MADDQ8WXG6 1647 aa19.16■□□□□ 0.66
LRRC28-206ENST00000558471 DHX29Q7Z478 1369 aaKnown RBP19.16■□□□□ 0.66
LRRC28-206ENST00000558471 SHANK2Q9UPX8 1470 aa19.16■□□□□ 0.66
LRRC28-206ENST00000558471 CHIC2Q9UKJ5 165 aa19.15■□□□□ 0.66
LRRC28-206ENST00000558471 RRBP1Q9P2E9 1410 aaKnown RBP19.13■□□□□ 0.65
LRRC28-206ENST00000558471 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.12■□□□□ 0.65
LRRC28-206ENST00000558471 FER1L4A9Z1Z3 1794 aa19.11■□□□□ 0.65
LRRC28-206ENST00000558471 RIMS1Q86UR5 1692 aaKnown RBP19.11■□□□□ 0.65
LRRC28-206ENST00000558471 RRP7BPQ9NSQ0 103 aa19.11■□□□□ 0.65
LRRC28-206ENST00000558471 PTPRKQ15262 1439 aa19.1■□□□□ 0.65
LRRC28-206ENST00000558471 PTPRMP28827 1452 aa19.09■□□□□ 0.65
LRRC28-206ENST00000558471 KIF3BO15066 747 aa19.09■□□□□ 0.65
LRRC28-206ENST00000558471 ITGAEP38570 1179 aa19.09■□□□□ 0.65
LRRC28-206ENST00000558471 GGT6Q6P531 493 aa19.09■□□□□ 0.65
LRRC28-206ENST00000558471 NCOA1Q15788 1441 aa19.08■□□□□ 0.65
LRRC28-206ENST00000558471 ANKRD30AQ9BXX3 1397 aa19.08■□□□□ 0.65
LRRC28-206ENST00000558471 KIF15Q9NS87 1388 aa19.08■□□□□ 0.65
LRRC28-206ENST00000558471 DUOX2Q9NRD8 1548 aa19.07■□□□□ 0.64
LRRC28-206ENST00000558471 ADGRL2O95490 1459 aa19.06■□□□□ 0.64
LRRC28-206ENST00000558471 ESF1Q9H501 851 aaKnown RBP19.04■□□□□ 0.64
LRRC28-206ENST00000558471 PLPPR3Q6T4P5 718 aa19.03■□□□□ 0.64
LRRC28-206ENST00000558471 EIF2AK4Q9P2K8 1649 aaKnown RBP19.03■□□□□ 0.64
LRRC28-206ENST00000558471 PPP6R1Q9UPN7 881 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms