RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 PIP4P2Q8N4L2 257 aa12.07□□□□□ -0.48
SPG11-209ENST00000558253 KIAA0586Q9BVV6 1533 aa12.06□□□□□ -0.48
SPG11-209ENST00000558253 MYOM3Q5VTT5 1437 aa12.05□□□□□ -0.48
SPG11-209ENST00000558253 HECW1Q76N89 1606 aa12.04□□□□□ -0.48
SPG11-209ENST00000558253 ITGAEP38570 1179 aa12.04□□□□□ -0.48
SPG11-209ENST00000558253 SUPT6HQ7KZ85 1726 aaKnown RBP12.03□□□□□ -0.48
SPG11-209ENST00000558253 FKBP8Q14318 412 aa12.03□□□□□ -0.48
SPG11-209ENST00000558253 MIA2Q96PC5 1412 aa12.03□□□□□ -0.48
SPG11-209ENST00000558253 NCOA2Q15596 1464 aa12.02□□□□□ -0.48
SPG11-209ENST00000558253 MAGI1Q96QZ7 1491 aaPredicted RBP12.02□□□□□ -0.48
SPG11-209ENST00000558253 ARHGEF11O15085 1522 aa12.02□□□□□ -0.48
SPG11-209ENST00000558253 HFM1A2PYH4 1435 aa12.02□□□□□ -0.49
SPG11-209ENST00000558253 PROM2Q8N271 834 aa12.01□□□□□ -0.49
SPG11-209ENST00000558253 CDK11AQ9UQ88 783 aaPredicted RBP12□□□□□ -0.49
SPG11-209ENST00000558253 AKNAQ7Z591 1439 aa12□□□□□ -0.49
SPG11-209ENST00000558253 TCOF1Q13428 1488 aaKnown RBP12□□□□□ -0.49
SPG11-209ENST00000558253 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
SPG11-209ENST00000558253 ERCC6Q03468 1493 aa11.99□□□□□ -0.49
SPG11-209ENST00000558253 MAPKBP1O60336 1514 aa11.98□□□□□ -0.49
SPG11-209ENST00000558253 EPRSP07814 1512 aaKnown RBP11.98□□□□□ -0.49
SPG11-209ENST00000558253 GRIN2AQ12879 1464 aa11.98□□□□□ -0.49
SPG11-209ENST00000558253 UACAQ9BZF9 1416 aa11.96□□□□□ -0.49
SPG11-209ENST00000558253 ZNF608Q9ULD9 1512 aaPredicted RBP11.96□□□□□ -0.5
SPG11-209ENST00000558253 SYNJ2O15056 1496 aa11.95□□□□□ -0.5
SPG11-209ENST00000558253 SPDYE1Q8NFV5 336 aaPredicted RBP11.95□□□□□ -0.5
SPG11-209ENST00000558253 PTPN23Q9H3S7 1636 aa11.93□□□□□ -0.5
SPG11-209ENST00000558253 MIER1Q8N108 512 aa11.93□□□□□ -0.5
SPG11-209ENST00000558253 SP7Q8TDD2 431 aaPredicted RBP11.93□□□□□ -0.5
SPG11-209ENST00000558253 CARMIL2Q6F5E8 1435 aa11.93□□□□□ -0.5
SPG11-209ENST00000558253 KIAA0556O60303 1618 aa11.93□□□□□ -0.5
SPG11-209ENST00000558253 EIF4G3O43432 1585 aaKnown RBP11.92□□□□□ -0.5
SPG11-209ENST00000558253 DISP1Q96F81 1524 aa11.92□□□□□ -0.5
SPG11-209ENST00000558253 CHMP7Q8WUX9 453 aaPredicted RBP11.92□□□□□ -0.5
SPG11-209ENST00000558253 NAIPQ13075 1403 aa11.92□□□□□ -0.5
SPG11-209ENST00000558253 ROCK1Q13464 1354 aa11.92□□□□□ -0.5
SPG11-209ENST00000558253 LRRIQ1Q96JM4 1722 aa11.91□□□□□ -0.5
SPG11-209ENST00000558253 NUP160Q12769 1436 aa11.9□□□□□ -0.5
SPG11-209ENST00000558253 PPP1R15AO75807 674 aaPredicted RBP11.89□□□□□ -0.51
SPG11-209ENST00000558253 NEUROD1Q13562 356 aa11.89□□□□□ -0.51
SPG11-209ENST00000558253 PTPRKQ15262 1439 aa11.88□□□□□ -0.51
SPG11-209ENST00000558253 MAGI3Q5TCQ9 1506 aa11.88□□□□□ -0.51
SPG11-209ENST00000558253 HAX1O00165 279 aa11.88□□□□□ -0.51
SPG11-209ENST00000558253 RAPGEF6Q8TEU7 1601 aa11.87□□□□□ -0.51
SPG11-209ENST00000558253 CLEC11AQ9Y240 323 aa11.87□□□□□ -0.51
SPG11-209ENST00000558253 STAG3Q9UJ98 1225 aa11.86□□□□□ -0.51
SPG11-209ENST00000558253 TONSLQ96HA7 1378 aa11.86□□□□□ -0.51
SPG11-209ENST00000558253 NUP153P49790 1475 aaKnown RBP11.85□□□□□ -0.51
SPG11-209ENST00000558253 TROQ12816 1431 aaPredicted RBP11.85□□□□□ -0.51
SPG11-209ENST00000558253 JPH4Q96JJ6 628 aa11.84□□□□□ -0.51
SPG11-209ENST00000558253 GCC2Q8IWJ2 1684 aa11.84□□□□□ -0.51
SPG11-209ENST00000558253 CDK13Q14004 1512 aaKnown RBP11.83□□□□□ -0.52
SPG11-209ENST00000558253 SIN3AQ96ST3 1273 aa11.83□□□□□ -0.52
SPG11-209ENST00000558253 CEP170Q5SW79 1584 aa11.82□□□□□ -0.52
SPG11-209ENST00000558253 DAPK1P53355 1430 aa11.8□□□□□ -0.52
SPG11-209ENST00000558253 DNMT1P26358 1616 aaKnown RBP11.78□□□□□ -0.52
SPG11-209ENST00000558253 ADCY10Q96PN6 1610 aa11.78□□□□□ -0.52
SPG11-209ENST00000558253 PLEKHD1A6NEE1 506 aa11.78□□□□□ -0.52
SPG11-209ENST00000558253 PRKAR2AP13861 404 aaKnown RBP11.78□□□□□ -0.52
SPG11-209ENST00000558253 GTF3C3Q9Y5Q9 886 aa11.78□□□□□ -0.52
SPG11-209ENST00000558253 ITSN2Q9NZM3 1697 aa11.78□□□□□ -0.52
SPG11-209ENST00000558253 ABCC5O15440 1437 aa11.77□□□□□ -0.52
SPG11-209ENST00000558253 MPHOSPH9Q99550 1183 aa11.77□□□□□ -0.53
SPG11-209ENST00000558253 CFDP1Q9UEE9 299 aaPredicted RBP11.77□□□□□ -0.53
SPG11-209ENST00000558253 PRR29P0C7W0 189 aa11.76□□□□□ -0.53
SPG11-209ENST00000558253 RRP7BPQ9NSQ0 103 aa11.76□□□□□ -0.53
SPG11-209ENST00000558253 ABCA8O94911 1581 aa11.75□□□□□ -0.53
SPG11-209ENST00000558253 RSPH4AQ5TD94 716 aa11.75□□□□□ -0.53
SPG11-209ENST00000558253 TRIM52Q96A61 297 aa11.75□□□□□ -0.53
SPG11-209ENST00000558253 ADGRL2O95490 1459 aa11.75□□□□□ -0.53
SPG11-209ENST00000558253 GPATCH8Q9UKJ3 1502 aaKnown RBP11.75□□□□□ -0.53
SPG11-209ENST00000558253 CCER2I3L3R5 266 aa11.74□□□□□ -0.53
SPG11-209ENST00000558253 EVX2Q03828 476 aa11.73□□□□□ -0.53
SPG11-209ENST00000558253 PLB1Q6P1J6 1458 aa11.73□□□□□ -0.53
SPG11-209ENST00000558253 ANKRD30AQ9BXX3 1397 aa11.73□□□□□ -0.53
SPG11-209ENST00000558253 CHIC2Q9UKJ5 165 aa11.73□□□□□ -0.53
SPG11-209ENST00000558253 SHANK2Q9UPX8 1470 aa11.72□□□□□ -0.53
SPG11-209ENST00000558253 PRG4Q92954 1404 aaPredicted RBP11.72□□□□□ -0.53
SPG11-209ENST00000558253 YTHDC1Q96MU7 727 aaKnown RBP11.72□□□□□ -0.53
SPG11-209ENST00000558253 CAMSAP2Q08AD1 1489 aa11.71□□□□□ -0.53
SPG11-209ENST00000558253 PTPRGP23470 1445 aa11.71□□□□□ -0.53
SPG11-209ENST00000558253 NCOA1Q15788 1441 aa11.71□□□□□ -0.53
SPG11-209ENST00000558253 ATP10BO94823 1461 aa11.7□□□□□ -0.54
SPG11-209ENST00000558253 ANP32CO43423 234 aa11.7□□□□□ -0.54
SPG11-209ENST00000558253 KIF14Q15058 1648 aa11.7□□□□□ -0.54
SPG11-209ENST00000558253 ANKRD30BQ9BXX2 1392 aa11.69□□□□□ -0.54
SPG11-209ENST00000558253 FBXO3Q9UK99 471 aa11.69□□□□□ -0.54
SPG11-209ENST00000558253 ABCC10Q5T3U5 1492 aa11.68□□□□□ -0.54
SPG11-209ENST00000558253 RPRD2Q5VT52 1461 aaKnown RBP11.68□□□□□ -0.54
SPG11-209ENST00000558253 ADGBQ8N7X0 1667 aa11.68□□□□□ -0.54
SPG11-209ENST00000558253 ARID3CA6NKF2 412 aa11.67□□□□□ -0.54
SPG11-209ENST00000558253 TSPY4P0CV99 314 aa11.67□□□□□ -0.54
SPG11-209ENST00000558253 TSPY10P0CW01 314 aa11.67□□□□□ -0.54
SPG11-209ENST00000558253 DDX10Q13206 875 aaKnown RBP11.67□□□□□ -0.54
SPG11-209ENST00000558253 DENND4BO75064 1496 aaPredicted RBP11.67□□□□□ -0.54
SPG11-209ENST00000558253 KDM5BQ9UGL1 1544 aa11.66□□□□□ -0.54
SPG11-209ENST00000558253 EIF4G2P78344 907 aaKnown RBP eCLIP11.66□□□□□ -0.54
SPG11-209ENST00000558253 ZNF644Q9H582 1327 aaPredicted RBP11.65□□□□□ -0.54
SPG11-209ENST00000558253 ARHGEF5Q12774 1597 aa11.65□□□□□ -0.54
SPG11-209ENST00000558253 CHADLQ6NUI6 762 aa11.64□□□□□ -0.55
SPG11-209ENST00000558253 CROCC2H7BZ55 1655 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms