RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 GPATCH8Q9UKJ3 1502 aaKnown RBP16.24■□□□□ 0.19
LRRC28-204ENST00000558172 EFCAB2Q5VUJ9 269 aa16.24■□□□□ 0.19
LRRC28-204ENST00000558172 NEO1Q92859 1461 aa16.23■□□□□ 0.19
LRRC28-204ENST00000558172 ARHGAP5Q13017 1502 aa16.23■□□□□ 0.19
LRRC28-204ENST00000558172 FANCAO15360 1455 aa16.22■□□□□ 0.19
LRRC28-204ENST00000558172 CFDP1Q9UEE9 299 aaPredicted RBP16.21■□□□□ 0.19
LRRC28-204ENST00000558172 AKNAQ7Z591 1439 aa16.19■□□□□ 0.18
LRRC28-204ENST00000558172 MYOM3Q5VTT5 1437 aa16.18■□□□□ 0.18
LRRC28-204ENST00000558172 MIA2Q96PC5 1412 aa16.17■□□□□ 0.18
LRRC28-204ENST00000558172 KDM6BO15054 1643 aa16.16■□□□□ 0.18
LRRC28-204ENST00000558172 PPARGC1BQ86YN6 1023 aaKnown RBP16.15■□□□□ 0.18
LRRC28-204ENST00000558172 ADGRL1O94910 1474 aa16.15■□□□□ 0.18
LRRC28-204ENST00000558172 PLEKHH2Q8IVE3 1493 aa16.15■□□□□ 0.18
LRRC28-204ENST00000558172 ZNF777Q9ULD5 760 aaPredicted RBP16.14■□□□□ 0.17
LRRC28-204ENST00000558172 SAMD9LQ8IVG5 1584 aa16.13■□□□□ 0.17
LRRC28-204ENST00000558172 SCAPERQ9BY12 1400 aa16.12■□□□□ 0.17
LRRC28-204ENST00000558172 ABCC1P33527 1531 aa16.12■□□□□ 0.17
LRRC28-204ENST00000558172 KIAA1107Q9UPP5 1409 aa16.11■□□□□ 0.17
LRRC28-204ENST00000558172 DENND4BO75064 1496 aaPredicted RBP16.11■□□□□ 0.17
LRRC28-204ENST00000558172 RICTORQ6R327 1708 aa16.11■□□□□ 0.17
LRRC28-204ENST00000558172 FGD6Q6ZV73 1430 aa16.11■□□□□ 0.17
LRRC28-204ENST00000558172 PTPN23Q9H3S7 1636 aa16.1■□□□□ 0.17
LRRC28-204ENST00000558172 CAMSAP2Q08AD1 1489 aa16.1■□□□□ 0.17
LRRC28-204ENST00000558172 COL17A1Q9UMD9 1497 aaPredicted RBP16.1■□□□□ 0.17
LRRC28-204ENST00000558172 RSPH4AQ5TD94 716 aa16.09■□□□□ 0.17
LRRC28-204ENST00000558172 ZNF644Q9H582 1327 aaPredicted RBP16.07■□□□□ 0.16
LRRC28-204ENST00000558172 TCOF1Q13428 1488 aaKnown RBP16.07■□□□□ 0.16
LRRC28-204ENST00000558172 SYCP2Q9BX26 1530 aa16.07■□□□□ 0.16
LRRC28-204ENST00000558172 ARHGEF12Q9NZN5 1544 aa16.06■□□□□ 0.16
LRRC28-204ENST00000558172 ZNF518AQ6AHZ1 1483 aa16.06■□□□□ 0.16
LRRC28-204ENST00000558172 POGZQ7Z3K3 1410 aa16.06■□□□□ 0.16
LRRC28-204ENST00000558172 RAPGEF3O95398 923 aa16.06■□□□□ 0.16
LRRC28-204ENST00000558172 HNRNPMP52272 730 aaKnown RBP eCLIP16.06■□□□□ 0.16
LRRC28-204ENST00000558172 ARHGEF5Q12774 1597 aa16.05■□□□□ 0.16
LRRC28-204ENST00000558172 FRMPD1Q5SYB0 1578 aa16.04■□□□□ 0.16
LRRC28-204ENST00000558172 MBD5Q9P267 1494 aa16.04■□□□□ 0.16
LRRC28-204ENST00000558172 KDM5CP41229 1560 aa16.03■□□□□ 0.16
LRRC28-204ENST00000558172 ZMYM4Q5VZL5 1548 aa16.03■□□□□ 0.16
LRRC28-204ENST00000558172 TRAPPC8Q9Y2L5 1435 aa16.02■□□□□ 0.16
LRRC28-204ENST00000558172 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.02■□□□□ 0.16
LRRC28-204ENST00000558172 AFAP1Q8N556 730 aa16.02■□□□□ 0.16
LRRC28-204ENST00000558172 CCDC141Q6ZP82 1450 aa16.02■□□□□ 0.15
LRRC28-204ENST00000558172 MAGI2Q86UL8 1455 aa16.02■□□□□ 0.15
LRRC28-204ENST00000558172 RRBP1Q9P2E9 1410 aaKnown RBP16.02■□□□□ 0.15
LRRC28-204ENST00000558172 FAM50AQ14320 339 aaKnown RBP16.01■□□□□ 0.15
LRRC28-204ENST00000558172 TSPY4P0CV99 314 aa16■□□□□ 0.15
LRRC28-204ENST00000558172 TSPY10P0CW01 314 aa16■□□□□ 0.15
LRRC28-204ENST00000558172 MLH3Q9UHC1 1453 aa15.99■□□□□ 0.15
LRRC28-204ENST00000558172 DNMT1P26358 1616 aaKnown RBP15.99■□□□□ 0.15
LRRC28-204ENST00000558172 HECW2Q9P2P5 1572 aa15.99■□□□□ 0.15
LRRC28-204ENST00000558172 SPAG9O60271 1321 aaKnown RBP15.98■□□□□ 0.15
LRRC28-204ENST00000558172 RTEL1-TNFRSF6BF6WH68 1400 aa15.97■□□□□ 0.15
LRRC28-204ENST00000558172 MYT1LQ9UL68 1186 aa15.97■□□□□ 0.15
LRRC28-204ENST00000558172 CROCC2H7BZ55 1655 aa15.97■□□□□ 0.15
LRRC28-204ENST00000558172 KIDINS220Q9ULH0 1771 aa15.97■□□□□ 0.15
LRRC28-204ENST00000558172 MAST1Q9Y2H9 1570 aa15.96■□□□□ 0.15
LRRC28-204ENST00000558172 DAPK1P53355 1430 aa15.96■□□□□ 0.15
LRRC28-204ENST00000558172 ZFYVE16Q7Z3T8 1539 aa15.96■□□□□ 0.15
LRRC28-204ENST00000558172 INO80Q9ULG1 1556 aaPredicted RBP15.96■□□□□ 0.14
LRRC28-204ENST00000558172 ABCC5O15440 1437 aa15.95■□□□□ 0.14
LRRC28-204ENST00000558172 ATP7AQ04656 1500 aa15.94■□□□□ 0.14
LRRC28-204ENST00000558172 SHANK2Q9UPX8 1470 aa15.94■□□□□ 0.14
LRRC28-204ENST00000558172 AEBP2Q6ZN18 517 aaPredicted RBP15.93■□□□□ 0.14
LRRC28-204ENST00000558172 ARHGEF40Q8TER5 1519 aa15.93■□□□□ 0.14
LRRC28-204ENST00000558172 C9orf84Q5VXU9 1444 aa15.92■□□□□ 0.14
LRRC28-204ENST00000558172 ADGBQ8N7X0 1667 aa15.92■□□□□ 0.14
LRRC28-204ENST00000558172 YEATS2Q9ULM3 1422 aa15.91■□□□□ 0.14
LRRC28-204ENST00000558172 DIP2CQ9Y2E4 1556 aa15.91■□□□□ 0.14
LRRC28-204ENST00000558172 ATP10AO60312 1499 aa15.91■□□□□ 0.14
LRRC28-204ENST00000558172 ABCA6Q8N139 1617 aa15.9■□□□□ 0.14
LRRC28-204ENST00000558172 PLXNC1O60486 1568 aa15.89■□□□□ 0.13
LRRC28-204ENST00000558172 REREQ9P2R6 1566 aa15.88■□□□□ 0.13
LRRC28-204ENST00000558172 ADGRL2O95490 1459 aa15.87■□□□□ 0.13
LRRC28-204ENST00000558172 ITGAEP38570 1179 aa15.87■□□□□ 0.13
LRRC28-204ENST00000558172 ANKRD30AQ9BXX3 1397 aa15.87■□□□□ 0.13
LRRC28-204ENST00000558172 CHIC2Q9UKJ5 165 aa15.86■□□□□ 0.13
LRRC28-204ENST00000558172 A2MP01023 1474 aa15.85■□□□□ 0.13
LRRC28-204ENST00000558172 ROCK1Q13464 1354 aa15.85■□□□□ 0.13
LRRC28-204ENST00000558172 PTPRKQ15262 1439 aa15.85■□□□□ 0.13
LRRC28-204ENST00000558172 NCOA1Q15788 1441 aa15.85■□□□□ 0.13
LRRC28-204ENST00000558172 DHX29Q7Z478 1369 aaKnown RBP15.84■□□□□ 0.13
LRRC28-204ENST00000558172 DUOX2Q9NRD8 1548 aa15.84■□□□□ 0.13
LRRC28-204ENST00000558172 AGLP35573 1532 aa15.83■□□□□ 0.12
LRRC28-204ENST00000558172 KIF15Q9NS87 1388 aa15.82■□□□□ 0.12
LRRC28-204ENST00000558172 RRP7BPQ9NSQ0 103 aa15.81■□□□□ 0.12
LRRC28-204ENST00000558172 ARID4BQ4LE39 1312 aaPredicted RBP15.8■□□□□ 0.12
LRRC28-204ENST00000558172 BCORL1Q5H9F3 1711 aa15.8■□□□□ 0.12
LRRC28-204ENST00000558172 SIGLEC1Q9BZZ2 1709 aa15.8■□□□□ 0.12
LRRC28-204ENST00000558172 EIF2AK4Q9P2K8 1649 aaKnown RBP15.79■□□□□ 0.12
LRRC28-204ENST00000558172 ERBINQ96RT1 1412 aa15.78■□□□□ 0.12
LRRC28-204ENST00000558172 TRIM26Q12899 539 aaPredicted RBP15.77■□□□□ 0.12
LRRC28-204ENST00000558172 GCC2Q8IWJ2 1684 aa15.76■□□□□ 0.11
LRRC28-204ENST00000558172 ANKRD50Q9ULJ7 1429 aa15.75■□□□□ 0.11
LRRC28-204ENST00000558172 KIF3BO15066 747 aa15.74■□□□□ 0.11
LRRC28-204ENST00000558172 PPP6R1Q9UPN7 881 aa15.73■□□□□ 0.11
LRRC28-204ENST00000558172 HFM1A2PYH4 1435 aa15.73■□□□□ 0.11
LRRC28-204ENST00000558172 RNF17Q9BXT8 1623 aaKnown RBP15.72■□□□□ 0.11
LRRC28-204ENST00000558172 NAIPQ13075 1403 aa15.72■□□□□ 0.11
LRRC28-204ENST00000558172 ADAMTSL3P82987 1691 aa15.71■□□□□ 0.11
LRRC28-204ENST00000558172 MLECQ14165 292 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms